Wall clock time and date at job start Wed Apr 1 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.46957 * 2 1 4 4 C 1.42901 * 114.00214 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.90613 * 341.25127 * 4 3 2 6 6 C 1.53948 * 113.66818 * 112.54996 * 4 3 2 7 7 C 1.53783 * 87.11286 * 139.89385 * 6 4 3 8 8 O 1.42905 * 113.69097 * 89.19819 * 7 6 4 9 9 C 1.52997 * 113.61430 * 220.09252 * 7 6 4 10 10 N 1.46497 * 109.47038 * 282.49355 * 9 7 6 11 11 C 1.34779 * 120.00285 * 180.02562 * 10 9 7 12 12 O 1.21616 * 119.99269 * 0.02562 * 11 10 9 13 13 C 1.47429 * 120.00372 * 180.02562 * 11 10 9 14 14 C 1.39227 * 120.28123 * 354.16467 * 13 11 10 15 15 C 1.38224 * 120.08697 * 179.72008 * 14 13 11 16 16 C 1.38819 * 120.67767 * 0.56030 * 15 14 13 17 17 C 1.37598 * 120.57414 * 359.71578 * 16 15 14 18 18 C 1.40708 * 119.87873 * 0.02562 * 17 16 15 19 19 C 1.40883 * 120.32800 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99990 * 145.84346 * 19 18 17 21 21 C 1.40274 * 120.00173 * 325.85153 * 19 18 17 22 22 N 1.30625 * 119.99856 * 350.76227 * 21 19 18 23 23 Si 1.86803 * 119.99976 * 170.76256 * 21 19 18 24 24 H 1.48492 * 109.47023 * 0.02562 * 23 21 19 25 25 H 1.48511 * 109.46846 * 119.99827 * 23 21 19 26 26 H 1.48493 * 109.47439 * 239.99715 * 23 21 19 27 27 C 1.53777 * 113.61834 * 210.00491 * 4 3 2 28 28 C 1.53000 * 113.61767 * 105.46475 * 27 4 3 29 29 C 1.53006 * 113.61190 * 334.64847 * 27 4 3 30 30 H 1.09001 * 109.46776 * 59.99516 * 1 2 3 31 31 H 1.08998 * 109.46969 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47141 * 300.00041 * 1 2 3 33 33 H 1.09005 * 109.46912 * 240.00447 * 2 1 3 34 34 H 1.08992 * 109.47367 * 119.99939 * 2 1 3 35 35 H 1.09004 * 113.53996 * 25.34479 * 6 4 3 36 36 H 1.08998 * 113.67047 * 254.46641 * 6 4 3 37 37 H 0.96693 * 113.99759 * 82.46628 * 8 7 6 38 38 H 1.08995 * 109.47563 * 42.49600 * 9 7 6 39 39 H 1.09004 * 109.46876 * 162.49651 * 9 7 6 40 40 H 0.97005 * 120.00106 * 0.02562 * 10 9 7 41 41 H 1.07997 * 119.95250 * 0.02562 * 14 13 11 42 42 H 1.08002 * 119.65443 * 180.25927 * 15 14 13 43 43 H 1.08005 * 119.71566 * 179.74522 * 16 15 14 44 44 H 1.07997 * 120.06016 * 180.02562 * 17 16 15 45 45 H 0.97008 * 119.99860 * 179.97438 * 22 21 19 46 46 H 1.08994 * 109.47429 * 279.13939 * 28 27 4 47 47 H 1.08999 * 109.47027 * 159.13651 * 28 27 4 48 48 H 1.09007 * 109.46935 * 39.13763 * 28 27 4 49 49 H 1.09005 * 109.46596 * 200.86336 * 29 27 4 50 50 H 1.09002 * 109.46996 * 320.86176 * 29 27 4 51 51 H 1.08997 * 109.46866 * 80.86737 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9291 0.5458 0.3218 6 6 4.0037 2.0482 -1.3029 7 6 4.9898 2.8342 -0.4227 8 8 6.2035 2.1304 -0.1509 9 6 5.2286 4.2681 -0.8999 10 7 6.1401 4.2558 -2.0467 11 6 6.4963 5.4139 -2.6370 12 8 6.0612 6.4692 -2.2172 13 6 7.4131 5.4015 -3.7914 14 6 8.0097 4.2122 -4.2013 15 6 8.8642 4.2041 -5.2878 16 6 9.1474 5.3766 -5.9749 17 6 8.5775 6.5684 -5.5900 18 6 7.7000 6.6031 -4.4906 19 6 7.1116 7.8182 -4.0881 20 1 6.1102 7.8254 -3.6836 21 6 7.8262 9.0188 -4.2128 22 7 9.0933 8.9947 -4.5295 23 14 6.9660 10.6519 -3.9260 24 1 5.5424 10.4077 -3.5815 25 1 7.6289 11.3710 -2.8084 26 1 7.0432 11.4754 -5.1593 27 6 3.9489 2.7251 0.7040 28 6 4.5609 2.4534 2.0797 29 6 2.9396 3.8749 0.7194 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.2988 2.6816 -1.8416 36 1 4.4839 1.3083 -1.9431 37 1 6.8621 2.1953 -0.8559 38 1 4.2796 4.7157 -1.1949 39 1 5.6696 4.8513 -0.0914 40 1 6.4873 3.4141 -2.3812 41 1 7.8007 3.2939 -3.6727 42 1 9.3199 3.2768 -5.6023 43 1 9.8205 5.3531 -6.8192 44 1 8.8033 7.4756 -6.1308 45 1 9.5874 9.8250 -4.6161 46 1 3.7658 2.3621 2.8195 47 1 5.2193 3.2777 2.3536 48 1 5.1338 1.5266 2.0458 49 1 3.4642 4.8166 0.8811 50 1 2.4149 3.9106 -0.2354 51 1 2.2209 3.7167 1.5234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601527456.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:07 Heat of formation + Delta-G solvation = -94.387268 kcal Electronic energy + Delta-G solvation = -31255.498305 eV Core-core repulsion = 27120.265835 eV Total energy + Delta-G solvation = -4135.232470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.95145 -38.85867 -37.51567 -36.69371 -35.07152 -33.98855 -33.37197 -31.37061 -30.49719 -30.05143 -29.64524 -27.89123 -26.88578 -25.33042 -23.26798 -22.74514 -22.68922 -21.70527 -20.79116 -19.59587 -18.72809 -17.76624 -17.10203 -16.67340 -16.06950 -15.74621 -15.52075 -15.35545 -15.20101 -14.59320 -14.39711 -14.21454 -13.82067 -13.70531 -13.46330 -13.25612 -13.11866 -12.72885 -12.67980 -12.61146 -12.48185 -12.35377 -12.18078 -12.05814 -11.98431 -11.70987 -11.54400 -11.40998 -11.14385 -11.05927 -10.99394 -10.95345 -10.69265 -10.55233 -10.18365 -10.08969 -9.81430 -9.67313 -9.48456 -9.29364 -8.48948 -8.40436 -7.61476 -7.38077 -6.81473 -4.40310 2.33265 2.78248 3.10339 3.19584 3.21296 3.44558 3.74217 3.79057 3.97369 4.13644 4.24794 4.50477 4.56187 4.66794 4.71165 4.80756 4.89714 5.05039 5.10207 5.11336 5.28331 5.39049 5.48885 5.59506 5.63357 5.65017 5.69263 5.76855 5.80401 5.84002 5.86581 5.87822 5.93642 5.98990 6.03473 6.18096 6.26748 6.29377 6.32006 6.57908 6.92691 7.00385 7.09161 7.10710 7.20291 7.43641 7.48331 7.59314 7.85533 7.95522 8.15402 8.30520 8.64818 8.80501 8.87839 9.36254 10.13850 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013988 B = 0.002646 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.215963 B =10578.419186 C =11504.648903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.369 6.369 4 C 0.078 3.922 5 H 0.090 0.910 6 C -0.177 4.177 7 C 0.105 3.895 8 O -0.537 6.537 9 C 0.114 3.886 10 N -0.749 5.749 11 C 0.566 3.434 12 O -0.534 6.534 13 C -0.262 4.262 14 C -0.057 4.057 15 C -0.246 4.246 16 C -0.096 4.096 17 C -0.147 4.147 18 C 0.145 3.855 19 C -0.415 4.415 20 H 0.106 0.894 21 C 0.069 3.931 22 N -0.792 5.792 23 Si 0.916 3.084 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.273 1.273 27 C -0.059 4.059 28 C -0.129 4.129 29 C -0.123 4.123 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.379 0.621 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.387 0.613 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.282 0.718 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 -14.754 7.909 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.288 6.288 4 C 0.020 3.980 5 H 0.108 0.892 6 C -0.215 4.215 7 C 0.064 3.936 8 O -0.343 6.343 9 C -0.011 4.011 10 N -0.406 5.406 11 C 0.360 3.640 12 O -0.412 6.412 13 C -0.267 4.267 14 C -0.076 4.076 15 C -0.265 4.265 16 C -0.115 4.115 17 C -0.166 4.166 18 C 0.141 3.859 19 C -0.443 4.443 20 H 0.123 0.877 21 C -0.150 4.150 22 N -0.417 5.417 23 Si 0.741 3.259 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.060 4.060 28 C -0.187 4.187 29 C -0.180 4.180 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.228 0.772 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.221 0.779 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.135 0.865 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.647 -13.788 8.752 19.495 hybrid contribution 0.634 0.050 -0.605 0.878 sum -10.012 -13.737 8.147 18.850 Atomic orbital electron populations 1.21743 0.93884 1.02073 1.03146 1.22487 0.95503 0.84281 0.99845 1.87948 1.20557 1.25828 1.94502 1.23755 0.80816 0.97453 0.95983 0.89234 1.24196 0.99127 1.00630 0.97528 1.22228 0.84640 0.90536 0.96245 1.86452 1.26100 1.74191 1.47549 1.21638 0.95128 0.94836 0.89477 1.45965 1.50985 1.09576 1.34053 1.18416 0.80579 0.82271 0.82723 1.90688 1.55522 1.30075 1.64947 1.19420 1.10269 0.95656 1.01373 1.20608 0.96167 0.95011 0.95800 1.20275 1.07348 0.96997 1.01890 1.20801 0.98706 0.93460 0.98497 1.21362 1.01017 0.96389 0.97853 1.17488 0.88577 0.91360 0.88485 1.20211 1.02451 0.89841 1.31762 0.87660 1.26133 0.94596 1.01790 0.92447 1.69723 1.07983 1.30095 1.33924 0.86112 0.81155 0.80215 0.78464 1.18002 1.19892 1.19879 1.22196 0.93493 0.95782 0.94486 1.21588 1.00150 1.02415 0.94504 1.21503 0.97505 0.96062 1.02972 0.91820 0.91319 0.91899 0.93537 0.93582 0.88180 0.90659 0.77210 0.90635 0.91339 0.77905 0.89463 0.89121 0.89082 0.86475 0.90745 0.92744 0.92015 0.91999 0.91818 0.91627 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.47 6.50 37.16 0.24 0.71 16 3 O -0.37 -4.02 9.48 -35.23 -0.33 -4.36 16 4 C 0.08 0.83 3.67 -25.83 -0.09 0.73 16 5 H 0.09 0.90 7.72 -51.93 -0.40 0.50 16 6 C -0.18 -1.96 6.96 -25.83 -0.18 -2.14 16 7 C 0.11 1.25 1.22 -89.81 -0.11 1.14 16 8 O -0.54 -6.27 12.39 -35.23 -0.44 -6.71 16 9 C 0.11 1.70 4.22 -4.04 -0.02 1.68 16 10 N -0.75 -12.58 5.27 -61.38 -0.32 -12.90 16 11 C 0.57 12.77 7.72 -12.52 -0.10 12.67 16 12 O -0.53 -13.88 13.59 5.26 0.07 -13.81 16 13 C -0.26 -6.26 5.92 -104.37 -0.62 -6.88 16 14 C -0.06 -1.17 9.52 -39.22 -0.37 -1.55 16 15 C -0.25 -5.10 10.03 -39.37 -0.39 -5.50 16 16 C -0.10 -2.13 10.01 -39.60 -0.40 -2.53 16 17 C -0.15 -3.70 8.62 -38.88 -0.34 -4.03 16 18 C 0.15 3.85 5.51 -106.54 -0.59 3.26 16 19 C -0.41 -11.31 7.68 -37.82 -0.29 -11.60 16 20 H 0.11 2.98 5.91 -52.48 -0.31 2.67 16 21 C 0.07 1.76 5.25 -17.30 -0.09 1.67 16 22 N -0.79 -20.47 11.14 55.56 0.62 -19.85 16 23 Si 0.92 19.63 29.57 -169.99 -5.03 14.60 16 24 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 C -0.06 -0.65 1.27 -153.69 -0.20 -0.85 16 28 C -0.13 -1.36 8.66 37.16 0.32 -1.04 16 29 C -0.12 -1.37 7.15 37.16 0.27 -1.11 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 1.20 7.54 -51.93 -0.39 0.81 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.38 3.72 7.60 45.56 0.35 4.07 16 38 H 0.08 1.18 6.91 -51.93 -0.36 0.82 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.39 5.44 5.39 -40.82 -0.22 5.22 16 41 H 0.09 1.44 6.44 -52.49 -0.34 1.10 16 42 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 43 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 44 H 0.12 3.01 6.59 -52.49 -0.35 2.67 16 45 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.66 7.62 -51.93 -0.40 0.26 16 49 H 0.06 0.73 7.43 -51.93 -0.39 0.34 16 50 H 0.06 0.76 7.05 -51.93 -0.37 0.40 16 51 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 404.96 15.07 6.10 6.10 Total: -1.00 -30.26 404.96 -9.27 -39.53 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -7.37 Total: 13.44 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.57 Total: -16.05 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.30 Total: -32.76 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.70 Total: -24.87 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.26 -9.27 -39.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601527456.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.858 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds