Wall clock time and date at job start Wed Apr 1 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47222 * 2 1 4 4 C 1.42901 * 114.00041 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.84962 * 18.80335 * 4 3 2 6 6 C 1.54049 * 113.60991 * 247.48939 * 4 3 2 7 7 C 1.53778 * 86.98648 * 270.88292 * 6 4 3 8 8 O 1.42905 * 113.61862 * 219.98205 * 7 6 4 9 9 C 1.53005 * 113.61162 * 89.16629 * 7 6 4 10 10 N 1.46494 * 109.47345 * 80.86321 * 9 7 6 11 11 C 1.34774 * 120.00044 * 179.97438 * 10 9 7 12 12 O 1.21609 * 120.00037 * 359.97438 * 11 10 9 13 13 C 1.47438 * 119.99823 * 179.97438 * 11 10 9 14 14 C 1.39225 * 120.28297 * 354.09718 * 13 11 10 15 15 C 1.38218 * 120.09078 * 179.97438 * 14 13 11 16 16 C 1.38835 * 120.67466 * 359.97438 * 15 14 13 17 17 C 1.37590 * 120.56914 * 359.76614 * 16 15 14 18 18 C 1.40700 * 119.88460 * 0.48825 * 17 16 15 19 19 C 1.40890 * 120.32787 * 179.75900 * 18 17 16 20 20 H 1.08008 * 119.99491 * 146.25225 * 19 18 17 21 21 C 1.40269 * 120.00623 * 326.25360 * 19 18 17 22 22 N 1.30635 * 119.99748 * 336.34092 * 21 19 18 23 23 Si 1.86802 * 120.00290 * 156.33579 * 21 19 18 24 24 H 1.48500 * 109.47164 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.46945 * 300.00104 * 23 21 19 26 26 H 1.48493 * 109.46920 * 60.00255 * 23 21 19 27 27 C 1.53779 * 87.17712 * 334.57419 * 7 6 4 28 28 C 1.52994 * 113.61877 * 140.01878 * 27 7 6 29 29 C 1.53001 * 113.61481 * 270.92768 * 27 7 6 30 30 H 1.08997 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46803 * 300.00373 * 1 2 3 32 32 H 1.09001 * 109.47012 * 60.00128 * 1 2 3 33 33 H 1.09001 * 109.47028 * 240.00117 * 2 1 3 34 34 H 1.09001 * 109.47012 * 119.99872 * 2 1 3 35 35 H 1.09009 * 113.60799 * 156.38042 * 6 4 3 36 36 H 1.08992 * 113.70024 * 25.40361 * 6 4 3 37 37 H 0.96696 * 113.99641 * 279.14459 * 8 7 6 38 38 H 1.08998 * 109.46948 * 320.85936 * 9 7 6 39 39 H 1.09004 * 109.46959 * 200.86588 * 9 7 6 40 40 H 0.96999 * 119.99959 * 359.97438 * 10 9 7 41 41 H 1.07992 * 119.95277 * 359.97242 * 14 13 11 42 42 H 1.08001 * 119.66228 * 180.02562 * 15 14 13 43 43 H 1.07998 * 119.71190 * 180.02562 * 16 15 14 44 44 H 1.08011 * 120.05828 * 180.28511 * 17 16 15 45 45 H 0.96998 * 119.99826 * 354.10161 * 22 21 19 46 46 H 1.09001 * 109.46825 * 60.00131 * 28 27 7 47 47 H 1.09001 * 109.47371 * 180.02562 * 28 27 7 48 48 H 1.09003 * 109.47355 * 300.00601 * 28 27 7 49 49 H 1.09002 * 109.47255 * 59.99437 * 29 27 7 50 50 H 1.08993 * 109.47373 * 180.02562 * 29 27 7 51 51 H 1.09004 * 109.46898 * 299.99542 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9278 0.5457 -0.3247 6 6 4.0039 2.0473 1.3033 7 6 3.8397 3.4326 0.6560 8 8 4.9241 4.3231 0.9266 9 6 2.4713 4.0687 0.9086 10 7 2.4561 4.6825 2.2387 11 6 1.3464 5.3071 2.6801 12 8 0.3578 5.3616 1.9740 13 6 1.3310 5.9243 4.0189 14 6 2.4130 5.7610 4.8798 15 6 2.3946 6.3418 6.1339 16 6 1.3037 7.0926 6.5508 17 6 0.2221 7.2761 5.7204 18 6 0.2134 6.6910 4.4409 19 6 -0.8915 6.8687 3.5849 20 1 -0.7425 6.9318 2.5170 21 6 -2.1849 6.9636 4.1194 22 7 -2.4472 6.4470 5.2902 23 14 -3.5321 7.8288 3.1571 24 1 -4.7966 7.7936 3.9349 25 1 -3.1393 9.2403 2.9155 26 1 -3.7312 7.1407 1.8564 27 6 3.9484 2.7253 -0.7052 28 6 2.9870 3.2758 -1.7604 29 6 5.3847 2.5979 -1.2167 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.0424 1.7715 1.4869 36 1 3.3639 1.8926 2.1718 37 1 4.8734 4.7532 1.7911 38 1 1.6985 3.3021 0.8534 39 1 2.2805 4.8319 0.1541 40 1 3.2448 4.6394 2.8018 41 1 3.2678 5.1797 4.5672 42 1 3.2378 6.2110 6.7959 43 1 1.3059 7.5398 7.5338 44 1 -0.6203 7.8655 6.0515 45 1 -1.7729 5.9245 5.7519 46 1 3.1954 4.3329 -1.9256 47 1 3.1200 2.7287 -2.6938 48 1 1.9604 3.1577 -1.4136 49 1 5.9748 2.0227 -0.5032 50 1 5.3833 2.0897 -2.1809 51 1 5.8192 3.5911 -1.3306 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601527458.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:11 Heat of formation + Delta-G solvation = -97.994376 kcal Electronic energy + Delta-G solvation = -31952.556440 eV Core-core repulsion = 27817.167554 eV Total energy + Delta-G solvation = -4135.388886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.03878 -38.87239 -37.40150 -36.79882 -35.06528 -34.11068 -33.37605 -31.30055 -30.44524 -30.07545 -29.44606 -28.15531 -26.37193 -25.07933 -23.33795 -22.94013 -22.57291 -21.80177 -20.88538 -19.62098 -18.55308 -18.18138 -17.43030 -16.74048 -15.97583 -15.73946 -15.39701 -15.25497 -14.71752 -14.54551 -14.46354 -14.08222 -13.96282 -13.71830 -13.63506 -13.33852 -13.13325 -12.69582 -12.60216 -12.51987 -12.41832 -12.22305 -12.16253 -12.12550 -11.98651 -11.70864 -11.59437 -11.21076 -11.14032 -11.03788 -10.91043 -10.76953 -10.73763 -10.36963 -10.24168 -10.15189 -9.72206 -9.64552 -9.53621 -9.02201 -8.51737 -8.37277 -7.77843 -7.62716 -7.16504 -4.44954 2.25827 2.74546 3.20769 3.31279 3.32285 3.41109 3.76253 3.96855 4.04317 4.10449 4.28780 4.44376 4.61136 4.63780 4.71948 4.93001 4.94828 5.06723 5.18073 5.21554 5.29825 5.45391 5.48434 5.48963 5.59493 5.68010 5.79111 5.80280 5.82211 5.83816 5.87830 5.93820 5.95269 6.05847 6.07750 6.13322 6.24443 6.34975 6.37353 6.52850 6.71909 6.99934 7.05989 7.12268 7.28395 7.50170 7.57507 7.59329 7.72777 7.89194 8.09017 8.21842 8.35177 8.74213 8.85385 9.37151 10.01251 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010980 B = 0.003365 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.553065 B = 8317.774056 C = 9537.183949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.058 3.942 3 O -0.356 6.356 4 C 0.073 3.927 5 H 0.079 0.921 6 C -0.184 4.184 7 C 0.110 3.890 8 O -0.547 6.547 9 C 0.117 3.883 10 N -0.749 5.749 11 C 0.565 3.435 12 O -0.533 6.533 13 C -0.267 4.267 14 C -0.043 4.043 15 C -0.262 4.262 16 C -0.075 4.075 17 C -0.201 4.201 18 C 0.122 3.878 19 C -0.467 4.467 20 H 0.105 0.895 21 C 0.035 3.965 22 N -0.787 5.787 23 Si 1.067 2.933 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.272 1.272 27 C -0.061 4.061 28 C -0.140 4.140 29 C -0.118 4.118 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.374 0.626 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.384 0.616 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.298 0.702 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.115 -10.945 -9.380 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 O -0.275 6.275 4 C 0.014 3.986 5 H 0.097 0.903 6 C -0.222 4.222 7 C 0.069 3.931 8 O -0.353 6.353 9 C -0.007 4.007 10 N -0.405 5.405 11 C 0.359 3.641 12 O -0.411 6.411 13 C -0.272 4.272 14 C -0.062 4.062 15 C -0.281 4.281 16 C -0.094 4.094 17 C -0.220 4.220 18 C 0.117 3.883 19 C -0.494 4.494 20 H 0.123 0.877 21 C -0.188 4.188 22 N -0.409 5.409 23 Si 0.890 3.110 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.197 1.197 27 C -0.062 4.062 28 C -0.197 4.197 29 C -0.175 4.175 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.222 0.778 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.218 0.782 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.094 0.906 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.823 -10.492 -10.383 17.197 hybrid contribution 2.207 -0.696 1.063 2.547 sum 11.030 -11.188 -9.320 18.268 Atomic orbital electron populations 1.21756 0.93486 1.02130 1.03713 1.22532 0.95805 0.83715 0.99747 1.87945 1.19030 1.26219 1.94324 1.22948 0.82112 0.97373 0.96130 0.90311 1.24242 1.02016 0.97261 0.98725 1.22857 0.86564 0.87532 0.96195 1.86502 1.46154 1.61997 1.40616 1.21576 0.95548 0.98083 0.85492 1.45944 1.16514 1.60520 1.17535 1.18337 0.81522 0.77175 0.87020 1.90687 1.33057 1.59434 1.57938 1.19374 1.00784 1.11489 0.95555 1.20674 0.95252 0.96324 0.93901 1.20219 1.00085 1.10167 0.97657 1.20728 0.94005 0.97242 0.97435 1.21220 0.99049 1.05184 0.96532 1.17464 0.92040 0.87657 0.91147 1.21159 0.91959 1.38079 0.98177 0.87686 1.27254 1.01123 0.94849 0.95573 1.70384 1.38976 1.19747 1.11782 0.83614 0.74639 0.76840 0.75921 1.19908 1.19902 1.19733 1.22194 0.96810 0.93618 0.93582 1.21695 1.00022 1.00712 0.97264 1.21418 0.93101 1.02859 1.00095 0.91228 0.91435 0.91716 0.93492 0.93473 0.88573 0.90116 0.77815 0.89011 0.91434 0.78162 0.89354 0.88967 0.88947 0.87698 0.88913 0.92248 0.92612 0.90615 0.92430 0.92545 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 37.16 0.38 -1.16 16 2 C 0.06 0.58 6.50 37.16 0.24 0.82 16 3 O -0.36 -4.44 6.76 -35.23 -0.24 -4.68 16 4 C 0.07 0.79 3.80 -25.77 -0.10 0.69 16 5 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 6 C -0.18 -2.07 7.00 -25.78 -0.18 -2.25 16 7 C 0.11 1.39 1.38 -89.81 -0.12 1.27 16 8 O -0.55 -6.87 12.49 -35.23 -0.44 -7.31 16 9 C 0.12 1.90 3.93 -4.04 -0.02 1.89 16 10 N -0.75 -13.35 5.29 -61.38 -0.32 -13.67 16 11 C 0.57 13.21 7.72 -12.52 -0.10 13.12 16 12 O -0.53 -14.34 13.58 5.27 0.07 -14.26 16 13 C -0.27 -6.49 5.92 -104.36 -0.62 -7.11 16 14 C -0.04 -0.89 9.52 -39.22 -0.37 -1.26 16 15 C -0.26 -5.47 10.03 -39.37 -0.39 -5.86 16 16 C -0.08 -1.66 10.01 -39.60 -0.40 -2.06 16 17 C -0.20 -5.01 8.05 -38.89 -0.31 -5.32 16 18 C 0.12 3.23 5.13 -106.54 -0.55 2.69 16 19 C -0.47 -12.89 7.62 -37.82 -0.29 -13.18 16 20 H 0.11 3.04 5.97 -52.48 -0.31 2.73 16 21 C 0.03 0.90 4.93 -17.30 -0.09 0.81 16 22 N -0.79 -21.06 12.61 55.56 0.70 -20.36 16 23 Si 1.07 22.55 30.00 -169.99 -5.10 17.45 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 C -0.06 -0.69 1.31 -153.70 -0.20 -0.89 16 28 C -0.14 -1.63 7.87 37.15 0.29 -1.34 16 29 C -0.12 -1.12 8.53 37.16 0.32 -0.80 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.94 7.66 -51.92 -0.40 0.54 16 36 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.37 4.03 7.42 45.56 0.34 4.37 16 38 H 0.09 1.65 5.86 -51.93 -0.30 1.35 16 39 H 0.07 1.20 7.43 -51.93 -0.39 0.82 16 40 H 0.38 5.77 5.19 -40.82 -0.21 5.56 16 41 H 0.09 1.50 6.44 -52.49 -0.34 1.17 16 42 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 43 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.10 2.66 7.07 -52.48 -0.37 2.29 16 45 H 0.30 8.18 6.93 -40.82 -0.28 7.90 16 46 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 1.01 6.13 -51.93 -0.32 0.69 16 49 H 0.06 0.51 7.34 -51.93 -0.38 0.13 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -30.81 399.95 -9.02 -39.83 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -7.22 Total: 16.94 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -2.50 Total: -19.96 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.38 Total: -34.03 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.61 Total: -26.26 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.10 Total: 17.45 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.81 -9.02 -39.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601527458.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.164 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds