Wall clock time and date at job start Wed Apr 1 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47188 * 2 1 4 4 C 1.42901 * 113.99775 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.85293 * 338.31131 * 4 3 2 6 6 C 1.53780 * 113.61711 * 109.50692 * 4 3 2 7 7 C 1.53785 * 87.08080 * 89.19808 * 6 4 3 8 8 O 1.42905 * 113.61601 * 270.80325 * 7 6 4 9 9 C 1.53002 * 113.61371 * 139.98658 * 7 6 4 10 10 N 1.46499 * 109.47402 * 79.50388 * 9 7 6 11 11 C 1.34778 * 119.99744 * 179.97438 * 10 9 7 12 12 O 1.21606 * 119.99937 * 0.02562 * 11 10 9 13 13 C 1.47429 * 119.99564 * 179.97438 * 11 10 9 14 14 C 1.39218 * 120.28442 * 5.59518 * 13 11 10 15 15 C 1.38228 * 120.09222 * 180.25001 * 14 13 11 16 16 C 1.38831 * 120.67506 * 359.48980 * 15 14 13 17 17 C 1.37596 * 120.56742 * 0.25534 * 16 15 14 18 18 C 1.40705 * 119.88492 * 359.97438 * 17 16 15 19 19 C 1.40884 * 120.32870 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00142 * 213.57737 * 19 18 17 21 21 C 1.40280 * 120.00129 * 33.57514 * 19 18 17 22 22 N 1.30628 * 119.99940 * 8.81681 * 21 19 18 23 23 Si 1.86797 * 120.00119 * 188.81636 * 21 19 18 24 24 H 1.48499 * 109.47213 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46808 * 119.99762 * 23 21 19 26 26 H 1.48495 * 109.47328 * 239.99862 * 23 21 19 27 27 C 1.53778 * 87.08183 * 25.43367 * 7 6 4 28 28 C 1.52999 * 113.61168 * 89.11509 * 27 7 6 29 29 C 1.52995 * 113.61760 * 220.01955 * 27 7 6 30 30 H 1.09000 * 109.46912 * 299.99922 * 1 2 3 31 31 H 1.09007 * 109.47112 * 59.99569 * 1 2 3 32 32 H 1.09002 * 109.47333 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47018 * 240.00589 * 2 1 3 34 34 H 1.08993 * 109.47074 * 120.00517 * 2 1 3 35 35 H 1.09004 * 113.61285 * 334.65636 * 6 4 3 36 36 H 1.08998 * 113.61659 * 203.74417 * 6 4 3 37 37 H 0.96708 * 113.99664 * 279.13862 * 8 7 6 38 38 H 1.09006 * 109.46573 * 319.50054 * 9 7 6 39 39 H 1.09008 * 109.46993 * 199.50773 * 9 7 6 40 40 H 0.96994 * 119.99762 * 0.02562 * 10 9 7 41 41 H 1.08001 * 119.95894 * 0.02562 * 14 13 11 42 42 H 1.07996 * 119.66052 * 179.77106 * 15 14 13 43 43 H 1.07992 * 119.71617 * 180.23465 * 16 15 14 44 44 H 1.08005 * 120.05302 * 179.97438 * 17 16 15 45 45 H 0.96998 * 120.00658 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.47382 * 60.00005 * 28 27 7 47 47 H 1.09002 * 109.46935 * 180.02562 * 28 27 7 48 48 H 1.09005 * 109.47493 * 300.00017 * 28 27 7 49 49 H 1.09002 * 109.47225 * 59.99560 * 29 27 7 50 50 H 1.09001 * 109.47558 * 180.02562 * 29 27 7 51 51 H 1.09002 * 109.46921 * 300.00213 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9267 0.5629 0.3703 6 6 4.0073 1.9778 -1.3289 7 6 3.8441 3.3957 -0.7563 8 8 2.5682 3.9793 -1.0275 9 6 5.0082 4.3301 -1.0921 10 7 4.8557 4.8277 -2.4615 11 6 5.7702 5.6729 -2.9772 12 8 6.7221 6.0220 -2.3058 13 6 5.6169 6.1732 -4.3555 14 6 4.4730 5.8707 -5.0890 15 6 4.3357 6.3375 -6.3828 16 6 5.3259 7.1191 -6.9626 17 6 6.4654 7.4390 -6.2608 18 6 6.6319 6.9724 -4.9438 19 6 7.7946 7.2947 -4.2165 20 1 8.2018 6.5883 -3.5084 21 6 8.4235 8.5333 -4.4122 22 7 7.8427 9.4539 -5.1344 23 14 10.0915 8.8662 -3.6401 24 1 10.5309 7.6709 -2.8763 25 1 11.0808 9.1622 -4.7074 26 1 9.9893 10.0299 -2.7233 27 6 3.9481 2.7591 0.6397 28 6 5.3828 2.6564 1.1610 29 6 2.9846 3.3640 1.6626 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.3686 1.7783 -2.1893 36 1 5.0457 1.6912 -1.4955 37 1 2.4899 4.3594 -1.9133 38 1 5.9481 3.7848 -1.0062 39 1 5.0112 5.1708 -0.3982 40 1 4.0961 4.5495 -2.9968 41 1 3.6932 5.2675 -4.6479 42 1 3.4470 6.0956 -6.9468 43 1 5.2009 7.4787 -7.9732 44 1 7.2307 8.0472 -6.7201 45 1 8.2773 10.3105 -5.2694 46 1 5.8184 3.6535 1.2251 47 1 5.3781 2.1974 2.1497 48 1 5.9742 2.0447 0.4797 49 1 1.9588 3.2296 1.3193 50 1 3.1148 2.8660 2.6234 51 1 3.1939 4.4280 1.7739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601527460.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:16 Heat of formation + Delta-G solvation = -89.359153 kcal Electronic energy + Delta-G solvation = -31409.323506 eV Core-core repulsion = 27274.309071 eV Total energy + Delta-G solvation = -4135.014435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.94223 -38.84849 -37.35510 -36.65066 -35.04379 -33.95393 -33.33286 -31.37766 -30.46158 -30.01398 -29.60776 -27.61957 -27.06111 -25.33420 -23.22039 -22.86948 -22.55284 -21.69601 -20.77392 -19.57541 -18.73713 -17.70416 -16.89806 -16.71781 -15.99137 -15.74155 -15.49938 -15.33478 -15.17613 -14.53562 -14.36005 -14.24756 -14.04603 -13.54531 -13.40052 -13.12369 -13.09909 -12.72536 -12.67371 -12.63078 -12.51084 -12.22793 -12.20136 -12.05734 -11.85514 -11.66068 -11.53256 -11.46748 -11.14068 -10.98237 -10.92162 -10.80204 -10.68060 -10.54691 -10.13063 -10.07502 -9.71267 -9.57814 -9.50939 -9.29267 -8.46762 -8.37907 -7.59906 -7.37194 -6.80607 -4.39732 2.34628 2.79189 3.10087 3.19488 3.21530 3.33234 3.79074 3.87422 3.97280 4.15425 4.34494 4.51703 4.67446 4.68546 4.70907 4.83365 4.95876 5.06957 5.12163 5.14800 5.25113 5.42356 5.50339 5.57174 5.61269 5.66629 5.69133 5.75803 5.79286 5.83271 5.88603 5.91388 5.96113 5.98834 6.03264 6.20341 6.28372 6.28828 6.49739 6.59654 6.94466 7.02859 7.12210 7.14444 7.21491 7.45280 7.61192 7.66334 7.87489 7.96978 8.16772 8.32536 8.65746 8.81730 8.88844 9.37942 10.14286 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.002722 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.269595 B =10285.598056 C =11658.719652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.348 6.348 4 C 0.079 3.921 5 H 0.071 0.929 6 C -0.186 4.186 7 C 0.114 3.886 8 O -0.524 6.524 9 C 0.109 3.891 10 N -0.748 5.748 11 C 0.566 3.434 12 O -0.536 6.536 13 C -0.262 4.262 14 C -0.057 4.057 15 C -0.246 4.246 16 C -0.096 4.096 17 C -0.148 4.148 18 C 0.144 3.856 19 C -0.415 4.415 20 H 0.106 0.894 21 C 0.068 3.932 22 N -0.792 5.792 23 Si 0.917 3.083 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.064 4.064 28 C -0.133 4.133 29 C -0.124 4.124 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.373 0.627 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.387 0.613 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.282 0.718 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.075 0.925 50 H 0.047 0.953 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 -15.320 8.850 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.020 3.980 5 H 0.089 0.911 6 C -0.224 4.224 7 C 0.073 3.927 8 O -0.329 6.329 9 C -0.016 4.016 10 N -0.405 5.405 11 C 0.360 3.640 12 O -0.414 6.414 13 C -0.267 4.267 14 C -0.076 4.076 15 C -0.265 4.265 16 C -0.115 4.115 17 C -0.167 4.167 18 C 0.140 3.860 19 C -0.443 4.443 20 H 0.124 0.876 21 C -0.150 4.150 22 N -0.417 5.417 23 Si 0.741 3.259 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.065 4.065 28 C -0.190 4.190 29 C -0.181 4.181 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.221 0.779 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.221 0.779 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.136 0.864 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.066 0.934 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.237 -14.853 9.896 19.657 hybrid contribution 0.437 0.148 -0.690 0.830 sum -7.799 -14.705 9.206 19.022 Atomic orbital electron populations 1.21719 0.93774 1.01955 1.03250 1.22506 0.95592 0.84394 0.99705 1.87997 1.19079 1.25187 1.94327 1.22980 0.82018 0.97013 0.95978 0.91067 1.24200 1.02057 0.97535 0.98612 1.22328 0.83656 0.90641 0.96124 1.86551 1.31240 1.77755 1.37312 1.21728 0.97525 0.97429 0.84869 1.45956 1.29097 1.50928 1.14488 1.18415 0.81102 0.77257 0.87215 1.90676 1.31074 1.57744 1.61920 1.19420 0.98336 1.15443 0.93533 1.20613 0.95199 0.97461 0.94292 1.20282 1.00777 1.08796 0.96662 1.20805 0.94792 0.97808 0.98065 1.21381 0.97979 1.02989 0.94349 1.17493 0.90459 0.87253 0.90773 1.20234 1.05758 1.00214 1.18060 0.87617 1.26143 0.99067 0.96028 0.93771 1.69720 1.37033 1.04709 1.30272 0.86106 0.80889 0.79497 0.79412 1.18032 1.19892 1.19890 1.22124 0.96470 0.94224 0.93698 1.21685 0.93053 1.03260 1.01019 1.21425 1.00200 1.00003 0.96488 0.91897 0.91761 0.91366 0.93639 0.93700 0.90172 0.88429 0.77874 0.90990 0.91492 0.77871 0.89440 0.89120 0.89095 0.86365 0.90753 0.90867 0.91692 0.91928 0.90604 0.93377 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.47 6.51 37.16 0.24 0.71 16 3 O -0.35 -3.95 8.40 -39.37 -0.33 -4.28 16 4 C 0.08 0.82 3.77 -25.92 -0.10 0.72 16 5 H 0.07 0.63 7.85 -51.93 -0.41 0.23 16 6 C -0.19 -2.04 6.95 -25.92 -0.18 -2.22 16 7 C 0.11 1.41 1.24 -89.81 -0.11 1.30 16 8 O -0.52 -6.92 12.00 -39.37 -0.47 -7.40 16 9 C 0.11 1.64 4.15 -4.04 -0.02 1.62 16 10 N -0.75 -12.79 5.29 -61.38 -0.32 -13.12 16 11 C 0.57 12.86 7.72 -12.52 -0.10 12.76 16 12 O -0.54 -13.95 13.57 5.27 0.07 -13.88 16 13 C -0.26 -6.31 5.92 -104.37 -0.62 -6.93 16 14 C -0.06 -1.19 9.52 -39.22 -0.37 -1.56 16 15 C -0.25 -5.16 10.03 -39.37 -0.39 -5.56 16 16 C -0.10 -2.15 10.01 -39.60 -0.40 -2.54 16 17 C -0.15 -3.73 8.62 -38.88 -0.34 -4.07 16 18 C 0.14 3.85 5.52 -106.54 -0.59 3.26 16 19 C -0.41 -11.33 7.71 -37.81 -0.29 -11.63 16 20 H 0.11 3.00 5.87 -52.49 -0.31 2.69 16 21 C 0.07 1.75 5.26 -17.30 -0.09 1.66 16 22 N -0.79 -20.52 11.08 55.56 0.62 -19.90 16 23 Si 0.92 19.63 29.57 -169.99 -5.03 14.61 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 C -0.06 -0.71 1.27 -153.70 -0.20 -0.91 16 28 C -0.13 -1.28 7.83 37.16 0.29 -0.99 16 29 C -0.12 -1.42 8.50 37.16 0.32 -1.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.01 7.52 -51.93 -0.39 0.62 16 37 H 0.37 4.24 7.49 45.56 0.34 4.58 16 38 H 0.07 1.09 7.01 -51.93 -0.36 0.73 16 39 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 40 H 0.39 5.65 5.26 -40.82 -0.21 5.43 16 41 H 0.09 1.48 6.43 -52.49 -0.34 1.14 16 42 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 44 H 0.12 3.06 6.53 -52.48 -0.34 2.71 16 45 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 46 H 0.07 0.77 7.36 -51.93 -0.38 0.38 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.56 7.24 -51.93 -0.38 0.18 16 49 H 0.08 0.98 6.67 -51.93 -0.35 0.64 16 50 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -30.83 403.12 -9.28 -40.11 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -7.34 Total: 13.99 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.56 Total: -16.21 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.29 Total: -33.02 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.73 Total: -25.55 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.83 -9.28 -40.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601527460.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.247 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds