Wall clock time and date at job start Wed Apr 1 2020 05:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47188 * 2 1 4 4 C 1.42901 * 113.99775 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.85293 * 338.31131 * 4 3 2 6 6 C 1.53780 * 113.61711 * 109.50692 * 4 3 2 7 7 C 1.53785 * 87.08080 * 89.19808 * 6 4 3 8 8 O 1.42905 * 113.61601 * 270.80325 * 7 6 4 9 9 C 1.53002 * 113.61371 * 139.98658 * 7 6 4 10 10 N 1.46499 * 109.47402 * 79.50388 * 9 7 6 11 11 C 1.34778 * 119.99744 * 179.97438 * 10 9 7 12 12 O 1.21606 * 119.99937 * 0.02562 * 11 10 9 13 13 C 1.47429 * 119.99564 * 179.97438 * 11 10 9 14 14 C 1.39218 * 120.28442 * 5.59518 * 13 11 10 15 15 C 1.38228 * 120.09222 * 180.25001 * 14 13 11 16 16 C 1.38831 * 120.67506 * 359.48980 * 15 14 13 17 17 C 1.37596 * 120.56742 * 0.25534 * 16 15 14 18 18 C 1.40705 * 119.88492 * 359.97438 * 17 16 15 19 19 C 1.40884 * 120.32870 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00142 * 213.57737 * 19 18 17 21 21 C 1.40280 * 120.00129 * 33.57514 * 19 18 17 22 22 N 1.30628 * 119.99940 * 8.81681 * 21 19 18 23 23 Si 1.86797 * 120.00119 * 188.81636 * 21 19 18 24 24 H 1.48499 * 109.47213 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46808 * 119.99762 * 23 21 19 26 26 H 1.48495 * 109.47328 * 239.99862 * 23 21 19 27 27 C 1.53778 * 87.08183 * 25.43367 * 7 6 4 28 28 C 1.52999 * 113.61168 * 89.11509 * 27 7 6 29 29 C 1.52995 * 113.61760 * 220.01955 * 27 7 6 30 30 H 1.09000 * 109.46912 * 299.99922 * 1 2 3 31 31 H 1.09007 * 109.47112 * 59.99569 * 1 2 3 32 32 H 1.09002 * 109.47333 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47018 * 240.00589 * 2 1 3 34 34 H 1.08993 * 109.47074 * 120.00517 * 2 1 3 35 35 H 1.09004 * 113.61285 * 334.65636 * 6 4 3 36 36 H 1.08998 * 113.61659 * 203.74417 * 6 4 3 37 37 H 0.96708 * 113.99664 * 279.13862 * 8 7 6 38 38 H 1.09006 * 109.46573 * 319.50054 * 9 7 6 39 39 H 1.09008 * 109.46993 * 199.50773 * 9 7 6 40 40 H 0.96994 * 119.99762 * 0.02562 * 10 9 7 41 41 H 1.08001 * 119.95894 * 0.02562 * 14 13 11 42 42 H 1.07996 * 119.66052 * 179.77106 * 15 14 13 43 43 H 1.07992 * 119.71617 * 180.23465 * 16 15 14 44 44 H 1.08005 * 120.05302 * 179.97438 * 17 16 15 45 45 H 0.96998 * 120.00658 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.47382 * 60.00005 * 28 27 7 47 47 H 1.09002 * 109.46935 * 180.02562 * 28 27 7 48 48 H 1.09005 * 109.47493 * 300.00017 * 28 27 7 49 49 H 1.09002 * 109.47225 * 59.99560 * 29 27 7 50 50 H 1.09001 * 109.47558 * 180.02562 * 29 27 7 51 51 H 1.09002 * 109.46921 * 300.00213 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9267 0.5629 0.3703 6 6 4.0073 1.9778 -1.3289 7 6 3.8441 3.3957 -0.7563 8 8 2.5682 3.9793 -1.0275 9 6 5.0082 4.3301 -1.0921 10 7 4.8557 4.8277 -2.4615 11 6 5.7702 5.6729 -2.9772 12 8 6.7221 6.0220 -2.3058 13 6 5.6169 6.1732 -4.3555 14 6 4.4730 5.8707 -5.0890 15 6 4.3357 6.3375 -6.3828 16 6 5.3259 7.1191 -6.9626 17 6 6.4654 7.4390 -6.2608 18 6 6.6319 6.9724 -4.9438 19 6 7.7946 7.2947 -4.2165 20 1 8.2018 6.5883 -3.5084 21 6 8.4235 8.5333 -4.4122 22 7 7.8427 9.4539 -5.1344 23 14 10.0915 8.8662 -3.6401 24 1 10.5309 7.6709 -2.8763 25 1 11.0808 9.1622 -4.7074 26 1 9.9893 10.0299 -2.7233 27 6 3.9481 2.7591 0.6397 28 6 5.3828 2.6564 1.1610 29 6 2.9846 3.3640 1.6626 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.3686 1.7783 -2.1893 36 1 5.0457 1.6912 -1.4955 37 1 2.4899 4.3594 -1.9133 38 1 5.9481 3.7848 -1.0062 39 1 5.0112 5.1708 -0.3982 40 1 4.0961 4.5495 -2.9968 41 1 3.6932 5.2675 -4.6479 42 1 3.4470 6.0956 -6.9468 43 1 5.2009 7.4787 -7.9732 44 1 7.2307 8.0472 -6.7201 45 1 8.2773 10.3105 -5.2694 46 1 5.8184 3.6535 1.2251 47 1 5.3781 2.1974 2.1497 48 1 5.9742 2.0447 0.4797 49 1 1.9588 3.2296 1.3193 50 1 3.1148 2.8660 2.6234 51 1 3.1939 4.4280 1.7739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601527460.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:15 Heat of formation + Delta-G solvation = -109.142798 kcal Electronic energy + Delta-G solvation = -31410.181389 eV Core-core repulsion = 27274.309071 eV Total energy + Delta-G solvation = -4135.872318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.90942 -40.53957 -38.64085 -38.01944 -36.07431 -35.68702 -34.96316 -32.08399 -31.92164 -31.53830 -31.05548 -28.79819 -28.06576 -27.14913 -24.30948 -23.92688 -23.37612 -23.12047 -22.49002 -21.24483 -19.64872 -19.46870 -18.47628 -17.50747 -17.23120 -17.05994 -16.85552 -16.46000 -16.35357 -15.95631 -15.87012 -15.74167 -15.08636 -14.90841 -14.78120 -14.56845 -14.49402 -14.03771 -13.85404 -13.61533 -13.45759 -13.40220 -13.25880 -13.08059 -12.98436 -12.86431 -12.80988 -12.73448 -12.49867 -12.42621 -12.32009 -12.24505 -11.89794 -11.72620 -11.62600 -11.49699 -11.15931 -11.05211 -10.59341 -10.29385 -10.25168 -9.99349 -9.39166 -9.23184 -8.67530 -6.36142 0.51924 1.01133 1.33098 1.47616 1.49185 2.20740 2.34672 2.35123 2.60790 2.78858 2.96157 3.45473 3.63328 3.64947 3.73490 3.78136 4.20820 4.24009 4.25016 4.31817 4.36720 4.38480 4.39009 4.54107 4.56650 4.58850 4.69798 4.74796 4.80149 4.81838 4.88353 4.93620 4.99491 5.02320 5.08146 5.09242 5.11714 5.18636 5.24803 5.30256 5.34575 5.38548 5.57332 5.60936 5.62792 5.82859 6.05631 6.11494 6.34582 6.41948 6.61288 6.72159 6.78644 6.92139 7.00164 7.64096 8.29629 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.002722 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.269595 B =10285.598056 C =11658.719652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.369 6.369 4 C 0.084 3.916 5 H 0.093 0.907 6 C -0.180 4.180 7 C 0.114 3.886 8 O -0.534 6.534 9 C 0.113 3.887 10 N -0.725 5.725 11 C 0.561 3.439 12 O -0.577 6.577 13 C -0.280 4.280 14 C -0.053 4.053 15 C -0.237 4.237 16 C -0.093 4.093 17 C -0.178 4.178 18 C 0.113 3.887 19 C -0.454 4.454 20 H 0.083 0.917 21 C 0.029 3.971 22 N -0.823 5.823 23 Si 0.979 3.021 24 H -0.268 1.268 25 H -0.254 1.254 26 H -0.268 1.268 27 C -0.066 4.066 28 C -0.132 4.132 29 C -0.120 4.120 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.380 0.620 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.402 0.598 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.100 0.900 45 H 0.289 0.711 46 H 0.058 0.942 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.416 -17.494 8.861 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.288 6.288 4 C 0.026 3.974 5 H 0.111 0.889 6 C -0.218 4.218 7 C 0.072 3.928 8 O -0.340 6.340 9 C -0.011 4.011 10 N -0.381 5.381 11 C 0.355 3.645 12 O -0.458 6.458 13 C -0.284 4.284 14 C -0.072 4.072 15 C -0.256 4.256 16 C -0.111 4.111 17 C -0.197 4.197 18 C 0.109 3.891 19 C -0.483 4.483 20 H 0.101 0.899 21 C -0.185 4.185 22 N -0.449 5.449 23 Si 0.800 3.200 24 H -0.192 1.192 25 H -0.179 1.179 26 H -0.193 1.193 27 C -0.067 4.067 28 C -0.189 4.189 29 C -0.177 4.177 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.228 0.772 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.239 0.761 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.137 0.863 44 H 0.118 0.882 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.976 -17.056 9.888 22.095 hybrid contribution 0.726 0.707 -0.721 1.244 sum -9.250 -16.349 9.166 20.901 Atomic orbital electron populations 1.21732 0.93270 1.03075 1.02428 1.22697 0.96072 0.83375 1.00650 1.87982 1.19441 1.26956 1.94373 1.22947 0.82018 0.97294 0.95162 0.88896 1.24186 1.02642 0.95943 0.99056 1.22399 0.82112 0.90492 0.97786 1.86559 1.31457 1.78003 1.37975 1.21826 0.99154 0.97222 0.82908 1.45647 1.28050 1.49030 1.15346 1.18432 0.81420 0.77751 0.86927 1.90655 1.32987 1.59456 1.62741 1.19794 0.98999 1.15058 0.94598 1.21049 0.94866 0.97003 0.94239 1.20803 1.01303 1.06730 0.96722 1.21186 0.93852 0.96963 0.99126 1.21316 0.99295 1.04613 0.94477 1.17885 0.91263 0.88420 0.91548 1.20174 1.07719 1.01175 1.19268 0.89947 1.26823 1.02102 0.95369 0.94238 1.69746 1.38362 1.05176 1.31665 0.85204 0.77152 0.78721 0.78894 1.19236 1.17862 1.19284 1.22227 0.97193 0.94546 0.92731 1.21698 0.92108 1.02807 1.02335 1.21362 0.99395 0.99454 0.97475 0.92504 0.92760 0.89301 0.92947 0.92406 0.90109 0.87649 0.77157 0.90989 0.93546 0.76103 0.84964 0.84974 0.86325 0.88160 0.90062 0.92315 0.89780 0.91069 0.92134 0.91731 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 71.98 0.74 -1.19 16 2 C 0.05 0.71 6.51 71.98 0.47 1.18 16 3 O -0.37 -7.58 8.40 -145.02 -1.22 -8.79 16 4 C 0.08 1.54 3.77 31.12 0.12 1.66 16 5 H 0.09 1.32 7.85 -2.39 -0.02 1.30 16 6 C -0.18 -3.53 6.95 31.12 0.22 -3.31 16 7 C 0.11 2.66 1.24 -10.27 -0.01 2.65 16 8 O -0.53 -13.39 12.00 -145.02 -1.74 -15.13 16 9 C 0.11 3.36 4.15 86.38 0.36 3.72 16 10 N -0.73 -24.25 5.29 -466.35 -2.47 -26.72 16 11 C 0.56 25.92 7.72 86.66 0.67 26.59 16 12 O -0.58 -31.40 13.57 -4.05 -0.05 -31.45 16 13 C -0.28 -13.52 5.92 -19.70 -0.12 -13.63 16 14 C -0.05 -2.08 9.52 22.50 0.21 -1.86 16 15 C -0.24 -9.12 10.03 22.41 0.22 -8.89 16 16 C -0.09 -4.01 10.01 22.26 0.22 -3.79 16 17 C -0.18 -9.19 8.62 22.72 0.20 -8.99 16 18 C 0.11 6.22 5.52 -21.11 -0.12 6.10 16 19 C -0.45 -26.28 7.71 23.41 0.18 -26.10 16 20 H 0.08 5.01 5.87 -2.91 -0.02 5.00 16 21 C 0.03 1.57 5.26 85.37 0.45 2.02 16 22 N -0.82 -44.39 11.08 21.88 0.24 -44.15 16 23 Si 0.98 42.00 29.57 68.60 2.03 44.03 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 C -0.07 -1.35 1.27 -51.66 -0.07 -1.42 16 28 C -0.13 -2.33 7.83 71.98 0.56 -1.77 16 29 C -0.12 -2.62 8.50 71.98 0.61 -2.01 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.11 1.91 7.52 -2.39 -0.02 1.89 16 37 H 0.38 7.90 7.49 -74.05 -0.55 7.35 16 38 H 0.07 2.18 7.01 -2.38 -0.02 2.16 16 39 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.40 10.85 5.26 -92.71 -0.49 10.36 16 41 H 0.13 3.90 6.43 -2.91 -0.02 3.88 16 42 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 44 H 0.10 5.44 6.53 -2.91 -0.02 5.42 16 45 H 0.29 14.02 8.29 -92.71 -0.77 13.26 16 46 H 0.06 1.21 7.36 -2.39 -0.02 1.19 16 47 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.13 7.24 -2.38 -0.02 1.11 16 49 H 0.06 1.52 6.67 -2.39 -0.02 1.50 16 50 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -70.79 403.12 1.62 -69.17 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -0.09 Total: 42.09 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 4.92 Total: -29.04 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -2.22 Total: -70.86 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -3.01 Total: -55.38 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -70.79 1.62 -69.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601527460.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.977 kcal (2) G-P(sol) polarization free energy of solvation -70.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds