Wall clock time and date at job start Wed Apr 1 2020 05:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99573 * 2 1 4 4 C 1.53002 * 109.46745 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47258 * 65.78868 * 4 3 2 6 6 C 1.46501 * 119.99497 * 274.13484 * 5 4 3 7 7 C 1.50704 * 109.46914 * 275.48819 * 6 5 4 8 8 H 1.08008 * 119.99950 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00100 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00160 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00096 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47452 * 90.00044 * 11 9 7 13 13 H 1.48505 * 109.47522 * 210.00249 * 11 9 7 14 14 H 1.48502 * 109.47115 * 330.00338 * 11 9 7 15 15 C 1.34768 * 120.00205 * 94.13023 * 5 4 3 16 16 O 1.21284 * 120.00195 * 5.58809 * 15 5 4 17 17 C 1.50703 * 119.99982 * 185.59062 * 15 5 4 18 18 H 1.08994 * 109.47280 * 48.14211 * 17 15 5 19 19 C 1.53005 * 109.46885 * 288.14213 * 17 15 5 20 20 O 1.42898 * 109.47373 * 168.14573 * 17 15 5 21 21 C 1.35898 * 117.00403 * 212.06287 * 20 17 15 22 22 C 1.38748 * 120.09757 * 174.56788 * 21 20 17 23 23 C 1.38001 * 119.88019 * 179.97438 * 22 21 20 24 24 C 1.38548 * 120.29218 * 359.97438 * 23 22 21 25 25 C 1.38269 * 119.93452 * 0.02562 * 24 23 22 26 26 C 1.38414 * 119.90520 * 359.97438 * 25 24 23 27 27 C 1.51377 * 109.75588 * 180.02562 * 25 24 23 28 28 C 1.54348 * 105.17014 * 342.79607 * 27 25 24 29 29 C 1.51693 * 130.24575 * 179.80572 * 24 23 22 30 30 H 1.09004 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47351 * 300.00073 * 1 2 3 32 32 H 1.08998 * 109.46842 * 60.00576 * 1 2 3 33 33 H 1.08999 * 109.47088 * 59.99856 * 3 2 1 34 34 H 1.08997 * 109.46860 * 299.99323 * 3 2 1 35 35 H 1.09002 * 109.47366 * 305.78074 * 4 3 2 36 36 H 1.09002 * 109.46849 * 185.78125 * 4 3 2 37 37 H 1.08998 * 109.47648 * 35.48962 * 6 5 4 38 38 H 1.09004 * 109.47032 * 155.49399 * 6 5 4 39 39 H 0.96997 * 120.00390 * 179.97438 * 10 9 7 40 40 H 1.09009 * 109.46767 * 299.20438 * 19 17 15 41 41 H 1.08999 * 109.47127 * 59.20386 * 19 17 15 42 42 H 1.09000 * 109.47133 * 179.21046 * 19 17 15 43 43 H 1.08000 * 120.05965 * 359.95320 * 22 21 20 44 44 H 1.07996 * 119.85456 * 179.97438 * 23 22 21 45 45 H 1.08000 * 119.91244 * 179.97438 * 26 25 24 46 46 H 1.08999 * 110.30427 * 223.87881 * 27 25 24 47 47 H 1.08997 * 110.30614 * 101.71964 * 27 25 24 48 48 H 1.08998 * 110.82008 * 144.59308 * 28 27 25 49 49 H 1.09001 * 110.81907 * 267.94772 * 28 27 25 50 50 H 1.09006 * 110.25198 * 78.29927 * 29 24 23 51 51 H 1.08996 * 110.49638 * 316.05133 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9781 0.5813 -1.2588 6 6 4.0211 -0.8766 -1.3971 7 6 5.3242 -1.3952 -0.8458 8 1 6.0478 -0.7077 -0.4332 9 6 5.5927 -2.7474 -0.8680 10 7 6.7298 -3.2000 -0.3865 11 14 4.3410 -3.9366 -1.5809 12 1 4.5977 -4.1141 -3.0327 13 1 4.4567 -5.2480 -0.8938 14 1 2.9732 -3.3931 -1.3830 15 6 4.3456 1.3672 -2.2901 16 8 4.4073 2.5696 -2.1443 17 6 4.6799 0.7519 -3.6245 18 1 3.8999 0.0436 -3.9037 19 6 6.0210 0.0217 -3.5279 20 8 4.7670 1.7789 -4.6143 21 6 4.3972 1.4493 -5.8798 22 6 4.3486 2.4236 -6.8665 23 6 3.9730 2.0838 -8.1502 24 6 3.6446 0.7736 -8.4586 25 6 3.6922 -0.1990 -7.4770 26 6 4.0686 0.1387 -6.1885 27 6 3.2925 -1.5366 -8.0622 28 6 2.5777 -1.1999 -9.3882 29 6 3.2039 0.1571 -9.7726 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8499 0.5572 0.8346 36 1 3.9783 2.1753 0.1042 37 1 3.1915 -1.3186 -0.8453 38 1 3.9402 -1.1441 -2.4507 39 1 6.9186 -4.1513 -0.4018 40 1 6.8034 0.7328 -3.2625 41 1 5.9589 -0.7524 -2.7630 42 1 6.2560 -0.4352 -4.4892 43 1 4.6039 3.4460 -6.6302 44 1 3.9349 2.8425 -8.9178 45 1 4.1055 -0.6208 -5.4216 46 1 2.6124 -2.0566 -7.3875 47 1 4.1762 -2.1454 -8.2530 48 1 2.7911 -1.9540 -10.1457 49 1 1.5031 -1.1006 -9.2346 50 1 4.0637 0.0047 -10.4251 51 1 2.4641 0.7903 -10.2622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:45 Heat of formation + Delta-G solvation = -88.870550 kcal Electronic energy + Delta-G solvation = -31769.000629 eV Core-core repulsion = 27634.007381 eV Total energy + Delta-G solvation = -4134.993247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.58978 -39.56386 -38.22547 -37.39659 -35.17222 -34.90659 -32.72690 -31.71876 -31.20629 -29.62538 -28.32891 -27.78855 -27.10486 -26.13021 -24.25563 -23.07173 -22.61059 -21.77704 -20.96634 -20.69961 -18.61340 -17.78582 -17.07237 -16.71273 -16.30512 -15.94653 -15.72387 -15.58013 -15.18931 -15.11837 -14.99068 -14.70882 -14.26242 -13.88397 -13.72496 -13.52784 -13.31553 -12.98548 -12.80063 -12.60787 -12.53834 -12.24570 -12.01077 -11.88082 -11.78505 -11.65733 -11.62459 -11.39825 -11.30132 -11.12345 -11.10463 -11.00368 -10.86523 -10.63339 -10.45720 -10.32797 -10.26011 -9.65560 -9.51949 -9.08582 -8.76514 -8.73358 -7.87109 -7.82685 -6.26989 -4.27288 1.38454 1.49292 3.03787 3.14224 3.14494 3.25073 3.27549 3.78291 3.98841 4.05899 4.23348 4.33975 4.47507 4.85444 4.92809 4.97793 5.04120 5.06729 5.15527 5.23087 5.27899 5.37927 5.38896 5.49470 5.53597 5.54974 5.56077 5.58540 5.60570 5.62865 5.68952 5.73345 5.81780 5.84054 5.97190 6.01813 6.12188 6.21879 6.30565 6.31553 6.39266 6.43057 6.46987 6.67743 6.77349 6.84985 7.07901 7.22068 7.34769 7.42552 7.63266 8.01689 8.34992 8.72631 8.81854 9.31448 10.84642 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.003713 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.347908 B = 7539.756619 C = 8489.499201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.047 3.953 4 C 0.121 3.879 5 N -0.579 5.579 6 C 0.203 3.797 7 C -0.540 4.540 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.885 5.885 11 Si 0.863 3.137 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.259 1.259 15 C 0.522 3.478 16 O -0.551 6.551 17 C 0.072 3.928 18 H 0.093 0.907 19 C -0.194 4.194 20 O -0.289 6.289 21 C 0.142 3.858 22 C -0.154 4.154 23 C -0.069 4.069 24 C -0.147 4.147 25 C -0.056 4.056 26 C -0.201 4.201 27 C -0.086 4.086 28 C -0.120 4.120 29 C -0.074 4.074 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.024 0.976 39 H 0.268 0.732 40 H 0.064 0.936 41 H 0.136 0.864 42 H 0.058 0.942 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.131 0.869 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.503 4.519 -12.598 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.031 4.031 4 C -0.002 4.002 5 N -0.310 5.310 6 C 0.082 3.918 7 C -0.578 4.578 8 H 0.100 0.900 9 C -0.124 4.124 10 N -0.522 5.522 11 Si 0.689 3.311 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.183 1.183 15 C 0.309 3.691 16 O -0.430 6.430 17 C 0.013 3.987 18 H 0.110 0.890 19 C -0.250 4.250 20 O -0.201 6.201 21 C 0.096 3.904 22 C -0.173 4.173 23 C -0.087 4.087 24 C -0.147 4.147 25 C -0.056 4.056 26 C -0.220 4.220 27 C -0.123 4.123 28 C -0.157 4.157 29 C -0.111 4.111 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.154 0.846 42 H 0.077 0.923 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.176 4.973 -12.383 16.781 hybrid contribution -0.734 -0.804 -0.212 1.109 sum -10.910 4.169 -12.595 17.176 Atomic orbital electron populations 1.22697 0.82092 1.02383 0.99378 1.88034 1.18760 1.27619 1.95246 1.23065 0.95151 0.84872 0.99974 1.21399 0.90891 1.00400 0.87498 1.47707 1.63207 1.08517 1.11586 1.20023 0.99140 0.75426 0.97192 1.21329 1.01673 0.93329 1.41514 0.90020 1.24846 0.95049 0.97942 0.94599 1.69885 1.22961 1.14716 1.44639 0.87033 0.82998 0.81310 0.79802 1.19788 1.20769 1.18280 1.19989 0.76969 0.86698 0.85476 1.90626 1.53738 1.14720 1.83908 1.22312 1.01181 0.88757 0.86403 0.88951 1.22767 0.94065 1.02928 1.05280 1.86186 1.80487 1.38789 1.14642 1.18943 0.93780 0.92703 0.84958 1.20308 1.06374 0.99031 0.91590 1.20335 0.97933 0.95053 0.95348 1.20498 1.04560 0.93576 0.96110 1.20298 0.96845 0.95912 0.92535 1.20811 1.07869 0.95915 0.97357 1.21095 1.00603 0.94205 0.96380 1.22277 0.99961 0.96787 0.96723 1.20982 1.00069 0.95686 0.94331 0.89931 0.94481 0.94589 0.92749 0.93475 0.88841 0.88750 0.92890 0.95828 0.92242 0.91727 0.84635 0.92346 0.85038 0.85835 0.85156 0.90570 0.89967 0.90702 0.91077 0.90710 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.29 9.12 -35.23 -0.32 -6.61 16 3 C 0.05 0.73 6.28 37.16 0.23 0.96 16 4 C 0.12 2.18 5.95 -4.04 -0.02 2.15 16 5 N -0.58 -11.87 2.44 -175.05 -0.43 -12.30 16 6 C 0.20 4.43 3.60 -5.19 -0.02 4.41 16 7 C -0.54 -13.62 7.38 -34.44 -0.25 -13.87 16 8 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -24.84 13.96 55.43 0.77 -24.07 16 11 Si 0.86 19.28 27.47 -169.99 -4.67 14.61 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 15 C 0.52 11.07 7.03 -10.99 -0.08 11.00 16 16 O -0.55 -12.82 16.04 -14.07 -0.23 -13.04 16 17 C 0.07 1.40 1.77 -27.88 -0.05 1.35 16 18 H 0.09 1.67 4.70 -51.93 -0.24 1.42 16 19 C -0.19 -3.77 9.10 37.16 0.34 -3.43 16 20 O -0.29 -5.57 9.34 -39.04 -0.36 -5.93 16 21 C 0.14 2.38 6.67 -39.26 -0.26 2.12 16 22 C -0.15 -2.24 9.99 -39.48 -0.39 -2.64 16 23 C -0.07 -0.85 10.03 -39.55 -0.40 -1.25 16 24 C -0.15 -1.82 6.15 -104.01 -0.64 -2.46 16 25 C -0.06 -0.76 6.13 -104.21 -0.64 -1.40 16 26 C -0.20 -3.14 8.67 -39.38 -0.34 -3.48 16 27 C -0.09 -0.93 6.77 -26.84 -0.18 -1.11 16 28 C -0.12 -1.04 7.07 -25.33 -0.18 -1.22 16 29 C -0.07 -0.68 6.79 -26.70 -0.18 -0.86 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 36 H 0.09 1.65 7.24 -51.93 -0.38 1.27 16 37 H 0.05 1.19 5.75 -51.93 -0.30 0.89 16 38 H 0.02 0.50 4.95 -51.93 -0.26 0.24 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 41 H 0.14 2.97 3.95 -51.93 -0.21 2.76 16 42 H 0.06 1.03 7.74 -51.93 -0.40 0.62 16 43 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.13 2.04 5.71 -52.49 -0.30 1.74 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 403.31 15.07 6.08 6.08 Total: -1.00 -30.71 403.31 -9.22 -39.93 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.01 Total: 7.57 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.05 Total: -6.24 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.35 Total: -36.36 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.91 Total: -25.59 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.67 Total: 14.61 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.71 -9.22 -39.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.943 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds