Wall clock time and date at job start Wed Apr 1 2020 05:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99573 * 2 1 4 4 C 1.53002 * 109.46745 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47258 * 65.78868 * 4 3 2 6 6 C 1.46501 * 119.99497 * 274.13484 * 5 4 3 7 7 C 1.50704 * 109.46914 * 275.48819 * 6 5 4 8 8 H 1.08008 * 119.99950 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00100 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00160 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00096 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47452 * 90.00044 * 11 9 7 13 13 H 1.48505 * 109.47522 * 210.00249 * 11 9 7 14 14 H 1.48502 * 109.47115 * 330.00338 * 11 9 7 15 15 C 1.34768 * 120.00205 * 94.13023 * 5 4 3 16 16 O 1.21284 * 120.00195 * 5.58809 * 15 5 4 17 17 C 1.50703 * 119.99982 * 185.59062 * 15 5 4 18 18 H 1.08994 * 109.47280 * 48.14211 * 17 15 5 19 19 C 1.53005 * 109.46885 * 288.14213 * 17 15 5 20 20 O 1.42898 * 109.47373 * 168.14573 * 17 15 5 21 21 C 1.35898 * 117.00403 * 212.06287 * 20 17 15 22 22 C 1.38748 * 120.09757 * 174.56788 * 21 20 17 23 23 C 1.38001 * 119.88019 * 179.97438 * 22 21 20 24 24 C 1.38548 * 120.29218 * 359.97438 * 23 22 21 25 25 C 1.38269 * 119.93452 * 0.02562 * 24 23 22 26 26 C 1.38414 * 119.90520 * 359.97438 * 25 24 23 27 27 C 1.51377 * 109.75588 * 180.02562 * 25 24 23 28 28 C 1.54348 * 105.17014 * 342.79607 * 27 25 24 29 29 C 1.51693 * 130.24575 * 179.80572 * 24 23 22 30 30 H 1.09004 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47351 * 300.00073 * 1 2 3 32 32 H 1.08998 * 109.46842 * 60.00576 * 1 2 3 33 33 H 1.08999 * 109.47088 * 59.99856 * 3 2 1 34 34 H 1.08997 * 109.46860 * 299.99323 * 3 2 1 35 35 H 1.09002 * 109.47366 * 305.78074 * 4 3 2 36 36 H 1.09002 * 109.46849 * 185.78125 * 4 3 2 37 37 H 1.08998 * 109.47648 * 35.48962 * 6 5 4 38 38 H 1.09004 * 109.47032 * 155.49399 * 6 5 4 39 39 H 0.96997 * 120.00390 * 179.97438 * 10 9 7 40 40 H 1.09009 * 109.46767 * 299.20438 * 19 17 15 41 41 H 1.08999 * 109.47127 * 59.20386 * 19 17 15 42 42 H 1.09000 * 109.47133 * 179.21046 * 19 17 15 43 43 H 1.08000 * 120.05965 * 359.95320 * 22 21 20 44 44 H 1.07996 * 119.85456 * 179.97438 * 23 22 21 45 45 H 1.08000 * 119.91244 * 179.97438 * 26 25 24 46 46 H 1.08999 * 110.30427 * 223.87881 * 27 25 24 47 47 H 1.08997 * 110.30614 * 101.71964 * 27 25 24 48 48 H 1.08998 * 110.82008 * 144.59308 * 28 27 25 49 49 H 1.09001 * 110.81907 * 267.94772 * 28 27 25 50 50 H 1.09006 * 110.25198 * 78.29927 * 29 24 23 51 51 H 1.08996 * 110.49638 * 316.05133 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9781 0.5813 -1.2588 6 6 4.0211 -0.8766 -1.3971 7 6 5.3242 -1.3952 -0.8458 8 1 6.0478 -0.7077 -0.4332 9 6 5.5927 -2.7474 -0.8680 10 7 6.7298 -3.2000 -0.3865 11 14 4.3410 -3.9366 -1.5809 12 1 4.5977 -4.1141 -3.0327 13 1 4.4567 -5.2480 -0.8938 14 1 2.9732 -3.3931 -1.3830 15 6 4.3456 1.3672 -2.2901 16 8 4.4073 2.5696 -2.1443 17 6 4.6799 0.7519 -3.6245 18 1 3.8999 0.0436 -3.9037 19 6 6.0210 0.0217 -3.5279 20 8 4.7670 1.7789 -4.6143 21 6 4.3972 1.4493 -5.8798 22 6 4.3486 2.4236 -6.8665 23 6 3.9730 2.0838 -8.1502 24 6 3.6446 0.7736 -8.4586 25 6 3.6922 -0.1990 -7.4770 26 6 4.0686 0.1387 -6.1885 27 6 3.2925 -1.5366 -8.0622 28 6 2.5777 -1.1999 -9.3882 29 6 3.2039 0.1571 -9.7726 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8499 0.5572 0.8346 36 1 3.9783 2.1753 0.1042 37 1 3.1915 -1.3186 -0.8453 38 1 3.9402 -1.1441 -2.4507 39 1 6.9186 -4.1513 -0.4018 40 1 6.8034 0.7328 -3.2625 41 1 5.9589 -0.7524 -2.7630 42 1 6.2560 -0.4352 -4.4892 43 1 4.6039 3.4460 -6.6302 44 1 3.9349 2.8425 -8.9178 45 1 4.1055 -0.6208 -5.4216 46 1 2.6124 -2.0566 -7.3875 47 1 4.1762 -2.1454 -8.2530 48 1 2.7911 -1.9540 -10.1457 49 1 1.5031 -1.1006 -9.2346 50 1 4.0637 0.0047 -10.4251 51 1 2.4641 0.7903 -10.2622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:44 Heat of formation + Delta-G solvation = -105.052414 kcal Electronic energy + Delta-G solvation = -31769.702327 eV Core-core repulsion = 27634.007381 eV Total energy + Delta-G solvation = -4135.694946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.89064 -40.92106 -39.46826 -38.66868 -36.88796 -35.91767 -34.63519 -33.23654 -32.21942 -31.10848 -29.55394 -29.35038 -28.00134 -27.23980 -25.73338 -24.50728 -24.22890 -23.01049 -21.93664 -21.68791 -20.17471 -19.23184 -18.90151 -18.18613 -17.71390 -17.19023 -16.91549 -16.67769 -16.55713 -16.28919 -16.18302 -16.04565 -15.85444 -15.21420 -15.03958 -14.85505 -14.57327 -14.40206 -14.24370 -13.83775 -13.67685 -13.54216 -13.49515 -13.31569 -13.06999 -12.83997 -12.72452 -12.70563 -12.60911 -12.50936 -12.38464 -12.21722 -12.07354 -12.01347 -11.96490 -11.67442 -11.59395 -11.38766 -10.85035 -10.74600 -10.55860 -9.82271 -9.54770 -8.97961 -8.29702 -6.34510 0.32602 0.40367 1.37929 1.41732 1.45575 1.51524 1.61254 2.34463 2.53652 2.71643 2.87449 3.03988 3.36851 3.47936 3.59558 3.65825 3.93475 3.99749 4.08480 4.16328 4.19431 4.21064 4.26106 4.34854 4.39293 4.50386 4.52484 4.56431 4.58094 4.61320 4.68833 4.70147 4.79508 4.83094 4.87297 4.88535 4.95216 4.98810 5.01514 5.09156 5.21011 5.32559 5.34104 5.34719 5.43171 5.45432 5.58258 5.66371 5.83232 6.11805 6.24507 6.34874 6.51300 6.68474 7.06992 7.28581 8.85504 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.003713 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.347908 B = 7539.756619 C = 8489.499201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.057 3.943 4 C 0.113 3.887 5 N -0.580 5.580 6 C 0.216 3.784 7 C -0.533 4.533 8 H 0.038 0.962 9 C 0.030 3.970 10 N -0.934 5.934 11 Si 0.923 3.077 12 H -0.257 1.257 13 H -0.284 1.284 14 H -0.242 1.242 15 C 0.515 3.485 16 O -0.577 6.577 17 C 0.081 3.919 18 H 0.105 0.895 19 C -0.183 4.183 20 O -0.309 6.309 21 C 0.107 3.893 22 C -0.164 4.164 23 C -0.065 4.065 24 C -0.144 4.144 25 C -0.070 4.070 26 C -0.215 4.215 27 C -0.090 4.090 28 C -0.114 4.114 29 C -0.072 4.072 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.037 0.963 39 H 0.269 0.731 40 H 0.050 0.950 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.136 0.864 44 H 0.157 0.843 45 H 0.123 0.877 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.182 3.903 -15.490 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.020 4.020 4 C -0.009 4.009 5 N -0.311 5.311 6 C 0.095 3.905 7 C -0.571 4.571 8 H 0.056 0.944 9 C -0.170 4.170 10 N -0.573 5.573 11 Si 0.746 3.254 12 H -0.182 1.182 13 H -0.210 1.210 14 H -0.165 1.165 15 C 0.303 3.697 16 O -0.458 6.458 17 C 0.022 3.978 18 H 0.122 0.878 19 C -0.240 4.240 20 O -0.223 6.223 21 C 0.062 3.938 22 C -0.183 4.183 23 C -0.083 4.083 24 C -0.145 4.145 25 C -0.070 4.070 26 C -0.233 4.233 27 C -0.127 4.127 28 C -0.151 4.151 29 C -0.109 4.109 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.094 0.906 43 H 0.153 0.847 44 H 0.174 0.826 45 H 0.140 0.860 46 H 0.095 0.905 47 H 0.106 0.894 48 H 0.115 0.885 49 H 0.095 0.905 50 H 0.107 0.893 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.881 4.370 -15.279 20.456 hybrid contribution 0.127 -0.536 0.649 0.851 sum -12.754 3.834 -14.631 19.784 Atomic orbital electron populations 1.22908 0.79840 1.03562 1.00726 1.87967 1.21260 1.28025 1.95513 1.22917 0.92872 0.84986 1.01221 1.21577 0.93248 0.99936 0.86154 1.47782 1.62876 1.08055 1.12379 1.19797 0.97063 0.76108 0.97569 1.21346 1.02123 0.92822 1.40792 0.94409 1.25615 0.96804 0.99681 0.94913 1.70028 1.25298 1.15192 1.46762 0.86061 0.81083 0.78599 0.79662 1.18193 1.20972 1.16483 1.20390 0.76492 0.86504 0.86307 1.90594 1.54943 1.15735 1.84489 1.22125 1.00957 0.88935 0.85815 0.87759 1.22583 0.94195 1.01922 1.05272 1.86141 1.81527 1.38817 1.15786 1.19272 0.96154 0.94041 0.84297 1.20555 1.06601 0.98950 0.92184 1.20699 0.96472 0.96123 0.94996 1.21031 1.02700 0.93285 0.97452 1.20716 0.96339 0.97940 0.91993 1.20846 1.08820 0.95278 0.98376 1.21225 1.01148 0.92784 0.97516 1.22313 0.99951 0.97020 0.95848 1.21095 1.01118 0.95958 0.92711 0.88917 0.92454 0.93880 0.89590 0.93953 0.89656 0.88808 0.92633 0.94478 0.92175 0.93058 0.86887 0.90633 0.84654 0.82583 0.85954 0.90475 0.89399 0.88463 0.90539 0.89293 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.82 16 2 O -0.41 -13.00 9.12 -148.98 -1.36 -14.36 16 3 C 0.06 1.73 6.28 71.98 0.45 2.18 16 4 C 0.11 4.14 5.95 86.38 0.51 4.65 16 5 N -0.58 -24.35 2.44 -826.13 -2.02 -26.37 16 6 C 0.22 9.48 3.60 85.63 0.31 9.79 16 7 C -0.53 -27.75 7.38 25.60 0.19 -27.56 16 8 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 9 C 0.03 1.59 5.47 84.65 0.46 2.05 16 10 N -0.93 -54.10 13.96 21.45 0.30 -53.80 16 11 Si 0.92 39.35 27.47 68.60 1.88 41.23 16 12 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 14 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 15 C 0.52 22.54 7.03 87.66 0.62 23.15 16 16 O -0.58 -27.71 16.04 15.72 0.25 -27.46 16 17 C 0.08 3.20 1.77 29.85 0.05 3.26 16 18 H 0.11 3.82 4.70 -2.39 -0.01 3.81 16 19 C -0.18 -7.39 9.10 71.98 0.66 -6.74 16 20 O -0.31 -12.30 9.34 -73.64 -0.69 -12.98 16 21 C 0.11 3.62 6.67 22.48 0.15 3.77 16 22 C -0.16 -4.68 9.99 22.34 0.22 -4.45 16 23 C -0.07 -1.46 10.03 22.29 0.22 -1.24 16 24 C -0.14 -3.18 6.15 -19.47 -0.12 -3.30 16 25 C -0.07 -1.78 6.13 -19.60 -0.12 -1.90 16 26 C -0.21 -6.64 8.67 22.40 0.19 -6.45 16 27 C -0.09 -1.71 6.77 30.52 0.21 -1.50 16 28 C -0.11 -1.52 7.07 31.50 0.22 -1.30 16 29 C -0.07 -1.03 6.79 30.61 0.21 -0.83 16 30 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 3.21 8.10 -2.39 -0.02 3.19 16 36 H 0.09 3.39 7.24 -2.39 -0.02 3.38 16 37 H 0.06 2.45 5.75 -2.39 -0.01 2.44 16 38 H 0.04 1.55 4.95 -2.39 -0.01 1.53 16 39 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.11 5.14 3.95 -2.39 -0.01 5.13 16 42 H 0.07 2.72 7.74 -2.39 -0.02 2.71 16 43 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.12 3.84 5.71 -2.91 -0.02 3.83 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 51 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -69.14 403.31 4.93 -64.21 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.87 Total: 34.09 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.69 Total: -4.57 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.72 Total: -80.16 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -1.79 Total: -54.80 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 1.88 Total: 41.23 kcal Total: -69.14 4.93 -64.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.838 kcal (2) G-P(sol) polarization free energy of solvation -69.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds