Wall clock time and date at job start Wed Apr 1 2020 05:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99537 * 2 1 4 4 C 1.53007 * 109.46853 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46962 * 64.99732 * 4 3 2 6 6 C 1.46503 * 119.99860 * 268.38241 * 5 4 3 7 7 C 1.50700 * 109.47202 * 269.12653 * 6 5 4 8 8 H 1.08004 * 120.00202 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00392 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99601 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00226 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47013 * 90.00425 * 11 9 7 13 13 H 1.48498 * 109.47147 * 210.00007 * 11 9 7 14 14 H 1.48496 * 109.47506 * 330.00037 * 11 9 7 15 15 C 1.34776 * 120.00157 * 88.38635 * 5 4 3 16 16 O 1.21277 * 119.99918 * 4.40448 * 15 5 4 17 17 C 1.50693 * 120.00077 * 184.41269 * 15 5 4 18 18 H 1.08999 * 109.47390 * 317.47893 * 17 15 5 19 19 C 1.53004 * 109.47720 * 77.48060 * 17 15 5 20 20 O 1.42895 * 109.47142 * 197.48229 * 17 15 5 21 21 C 1.35903 * 117.00508 * 155.41999 * 20 17 15 22 22 C 1.38753 * 120.08814 * 2.81604 * 21 20 17 23 23 C 1.38004 * 119.87970 * 179.97438 * 22 21 20 24 24 C 1.38557 * 120.28702 * 359.97438 * 23 22 21 25 25 C 1.38257 * 119.93575 * 0.02863 * 24 23 22 26 26 C 1.38410 * 119.90768 * 359.97438 * 25 24 23 27 27 C 1.51388 * 109.75033 * 180.02562 * 25 24 23 28 28 C 1.54343 * 105.17102 * 342.81179 * 27 25 24 29 29 C 1.51689 * 130.23513 * 179.85102 * 24 23 22 30 30 H 1.09000 * 109.46758 * 299.99911 * 1 2 3 31 31 H 1.08995 * 109.47450 * 60.00385 * 1 2 3 32 32 H 1.09005 * 109.46870 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47328 * 60.00381 * 3 2 1 34 34 H 1.08995 * 109.46909 * 299.99369 * 3 2 1 35 35 H 1.09000 * 109.46705 * 304.99878 * 4 3 2 36 36 H 1.08993 * 109.46896 * 184.99497 * 4 3 2 37 37 H 1.09000 * 109.47496 * 29.13129 * 6 5 4 38 38 H 1.08998 * 109.47275 * 149.12704 * 6 5 4 39 39 H 0.97001 * 120.00292 * 179.97438 * 10 9 7 40 40 H 1.08990 * 109.47506 * 176.71713 * 19 17 15 41 41 H 1.09000 * 109.46483 * 296.72189 * 19 17 15 42 42 H 1.08997 * 109.46652 * 56.71669 * 19 17 15 43 43 H 1.08004 * 120.06064 * 0.02562 * 22 21 20 44 44 H 1.07993 * 119.85952 * 179.97438 * 23 22 21 45 45 H 1.08004 * 119.91347 * 180.02562 * 26 25 24 46 46 H 1.08995 * 110.30317 * 223.88315 * 27 25 24 47 47 H 1.09002 * 110.29950 * 101.73171 * 27 25 24 48 48 H 1.08999 * 110.82277 * 144.58856 * 28 27 25 49 49 H 1.09004 * 110.82156 * 267.94136 * 28 27 25 50 50 H 1.09002 * 110.25067 * 78.28722 * 29 24 23 51 51 H 1.08993 * 110.49690 * 316.03498 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1393 -0.8892 -1.3321 7 6 5.5551 -1.2559 -0.9685 8 1 6.2622 -0.4835 -0.7043 9 6 5.9478 -2.5776 -0.9731 10 7 5.0867 -3.5182 -1.2944 11 14 7.7029 -3.0320 -0.5231 12 1 7.7933 -3.2686 0.9401 13 1 8.0963 -4.2662 -1.2492 14 1 8.6143 -1.9228 -0.9025 15 6 4.2301 1.3312 -2.3316 16 8 4.1723 2.5394 -2.2441 17 6 4.5863 0.6871 -3.6466 18 1 5.2829 -0.1330 -3.4726 19 6 3.3180 0.1468 -4.3101 20 8 5.1956 1.6561 -4.5020 21 6 6.0216 1.1882 -5.4745 22 6 6.1962 -0.1782 -5.6409 23 6 7.0356 -0.6486 -6.6302 24 6 7.7046 0.2378 -7.4588 25 6 7.5323 1.5997 -7.2948 26 6 6.6911 2.0745 -6.3034 27 6 8.3643 2.3472 -8.3150 28 6 9.3935 1.3182 -8.8289 29 6 8.6691 -0.0252 -8.5996 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8514 0.5684 0.8410 36 1 3.9784 2.1766 0.0888 37 1 3.4497 -1.3709 -0.6389 38 1 3.9266 -1.2239 -2.3474 39 1 5.3630 -4.4481 -1.2980 40 1 3.5670 -0.2670 -5.2872 41 1 2.8851 -0.6339 -3.6845 42 1 2.5982 0.9563 -4.4311 43 1 5.6755 -0.8724 -4.9979 44 1 7.1715 -1.7121 -6.7592 45 1 6.5561 3.1384 -6.1755 46 1 8.8730 3.1886 -7.8449 47 1 7.7352 2.6946 -9.1346 48 1 9.5992 1.4718 -9.8883 49 1 10.3135 1.3663 -8.2463 50 1 8.1224 -0.3173 -9.4962 51 1 9.3852 -0.7990 -8.3233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136833.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:49 Heat of formation + Delta-G solvation = -96.173230 kcal Electronic energy + Delta-G solvation = -31500.643605 eV Core-core repulsion = 27365.333690 eV Total energy + Delta-G solvation = -4135.309915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45727 -39.46214 -38.16710 -37.29457 -35.00828 -34.65403 -32.68284 -32.04881 -30.88112 -29.46501 -28.36730 -27.09951 -27.03113 -26.01650 -24.29371 -22.89930 -22.72131 -22.33865 -20.78205 -20.41633 -18.43104 -17.68047 -16.84085 -16.41808 -16.10625 -15.86031 -15.67850 -15.40154 -15.24270 -15.15760 -14.80661 -14.47864 -14.37315 -14.16881 -13.76114 -13.25508 -13.02673 -12.93081 -12.79819 -12.43026 -12.24893 -12.16830 -11.96522 -11.95830 -11.73512 -11.57003 -11.52964 -11.43283 -11.29064 -11.23773 -11.00009 -10.90657 -10.87621 -10.57909 -10.42025 -10.28074 -10.12663 -9.74569 -9.42749 -9.00754 -8.61292 -8.54877 -7.78186 -7.74870 -6.19338 -4.27108 1.51582 1.63396 3.04260 3.22260 3.29454 3.31004 3.35006 3.91418 4.04625 4.14395 4.34023 4.53830 4.58120 4.90950 5.01974 5.12227 5.13943 5.17558 5.31508 5.33700 5.36660 5.46456 5.47277 5.54679 5.56826 5.62135 5.62813 5.65385 5.66581 5.68264 5.73503 5.82160 5.85786 5.92816 5.97002 6.05295 6.07539 6.08289 6.30509 6.32185 6.35331 6.52691 6.64321 6.76885 6.79715 6.95453 7.22481 7.43501 7.50938 7.74335 7.76967 8.04644 8.25886 8.75337 8.92418 9.40822 10.86873 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009786 B = 0.003489 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.657912 B = 8024.288881 C = 9919.886261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.123 3.877 5 N -0.583 5.583 6 C 0.233 3.767 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.887 5.887 11 Si 0.892 3.108 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.525 3.475 16 O -0.558 6.558 17 C 0.067 3.933 18 H 0.116 0.884 19 C -0.170 4.170 20 O -0.290 6.290 21 C 0.141 3.859 22 C -0.204 4.204 23 C -0.064 4.064 24 C -0.146 4.146 25 C -0.065 4.065 26 C -0.144 4.144 27 C -0.079 4.079 28 C -0.121 4.121 29 C -0.075 4.075 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.139 0.861 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 6.162 -9.866 11.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.031 4.031 4 C -0.001 4.001 5 N -0.314 5.314 6 C 0.113 3.887 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.135 4.135 10 N -0.525 5.525 11 Si 0.719 3.281 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.311 3.689 16 O -0.437 6.437 17 C 0.007 3.993 18 H 0.134 0.866 19 C -0.228 4.228 20 O -0.203 6.203 21 C 0.095 3.905 22 C -0.222 4.222 23 C -0.082 4.082 24 C -0.146 4.146 25 C -0.065 4.065 26 C -0.163 4.163 27 C -0.116 4.116 28 C -0.158 4.158 29 C -0.112 4.112 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.157 0.843 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.666 6.597 -9.777 11.814 hybrid contribution 0.614 -0.548 0.487 0.956 sum -0.052 6.049 -9.290 11.086 Atomic orbital electron populations 1.22685 0.82123 1.02409 0.99216 1.88051 1.18691 1.27416 1.95219 1.23035 0.95199 0.84951 0.99876 1.21361 0.91057 0.99807 0.87851 1.48043 1.64003 1.10274 1.09074 1.19638 0.97302 0.72723 0.99009 1.21551 0.96271 0.92605 1.47891 0.92152 1.24898 0.97621 0.96168 0.94789 1.69925 1.34475 1.00628 1.47488 0.86577 0.84611 0.78121 0.78740 1.20426 1.20987 1.19738 1.19854 0.77286 0.86741 0.85008 1.90609 1.53673 1.14276 1.85182 1.22297 0.96777 0.91689 0.88498 0.86625 1.22284 0.96685 1.02103 1.01699 1.86125 1.57524 1.35212 1.41403 1.18870 0.90482 0.92121 0.89053 1.21372 1.04152 0.94655 1.02027 1.20396 0.94912 0.99243 0.93686 1.20477 1.01247 0.93749 0.99154 1.20220 0.96352 0.94677 0.95263 1.19708 1.00169 0.99375 0.97013 1.21023 0.96178 0.97921 0.96509 1.22282 0.98069 0.94351 1.01096 1.20982 0.96347 0.97853 0.95976 0.94690 0.94628 0.89844 0.93042 0.93387 0.89128 0.89337 0.92936 0.94417 0.92508 0.91196 0.89355 0.91722 0.84301 0.86044 0.85613 0.90724 0.90256 0.90809 0.91045 0.90780 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.48 9.70 -35.23 -0.34 -6.82 16 3 C 0.05 0.76 6.28 37.16 0.23 0.99 16 4 C 0.12 2.26 5.82 -4.04 -0.02 2.23 16 5 N -0.58 -12.34 2.42 -175.06 -0.42 -12.77 16 6 C 0.23 5.46 4.58 -5.19 -0.02 5.43 16 7 C -0.54 -14.07 9.01 -34.44 -0.31 -14.38 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -23.96 13.29 55.43 0.74 -23.23 16 11 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.52 11.40 6.94 -10.99 -0.08 11.32 16 16 O -0.56 -13.18 16.17 -13.72 -0.22 -13.40 16 17 C 0.07 1.32 1.79 -27.88 -0.05 1.27 16 18 H 0.12 2.43 4.92 -51.93 -0.26 2.18 16 19 C -0.17 -2.88 8.91 37.16 0.33 -2.55 16 20 O -0.29 -5.81 9.39 -38.71 -0.36 -6.17 16 21 C 0.14 2.51 6.57 -39.26 -0.26 2.26 16 22 C -0.20 -3.44 8.25 -39.48 -0.33 -3.77 16 23 C -0.06 -0.96 10.03 -39.55 -0.40 -1.36 16 24 C -0.15 -2.01 6.15 -104.01 -0.64 -2.64 16 25 C -0.06 -0.90 6.13 -104.21 -0.64 -1.54 16 26 C -0.14 -2.29 9.98 -39.39 -0.39 -2.68 16 27 C -0.08 -0.82 6.77 -26.84 -0.18 -1.00 16 28 C -0.12 -1.08 7.07 -25.33 -0.18 -1.26 16 29 C -0.07 -0.77 6.80 -26.70 -0.18 -0.95 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.66 8.06 -51.93 -0.42 1.25 16 36 H 0.09 1.58 7.41 -51.93 -0.38 1.19 16 37 H 0.05 1.33 7.28 -51.93 -0.38 0.95 16 38 H 0.04 0.89 4.73 -51.93 -0.25 0.65 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.07 1.07 7.09 -51.93 -0.37 0.70 16 41 H 0.09 1.52 6.35 -51.93 -0.33 1.19 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.14 2.41 5.56 -52.48 -0.29 2.11 16 44 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 410.73 15.07 6.19 6.19 Total: -1.00 -30.64 410.73 -9.68 -40.32 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.14 Total: 5.74 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.10 Total: -5.39 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.31 Total: -35.99 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.93 Total: -26.39 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.64 -9.68 -40.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136833.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.855 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds