Wall clock time and date at job start Wed Apr 1 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00350 * 2 1 4 4 C 1.53001 * 109.47536 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46716 * 65.83251 * 4 3 2 6 6 C 1.46503 * 120.00404 * 273.66350 * 5 4 3 7 7 C 1.50698 * 109.47287 * 270.00268 * 6 5 4 8 8 H 1.07994 * 119.99989 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99851 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99447 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00001 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47085 * 90.00056 * 11 9 7 13 13 H 1.48500 * 109.47157 * 209.99645 * 11 9 7 14 14 H 1.48498 * 109.47495 * 329.99670 * 11 9 7 15 15 C 1.34779 * 120.00032 * 93.66965 * 5 4 3 16 16 O 1.21280 * 119.99698 * 4.85869 * 15 5 4 17 17 C 1.50696 * 120.00335 * 184.86899 * 15 5 4 18 18 C 1.53778 * 113.61789 * 173.79327 * 17 15 5 19 19 C 1.53786 * 87.08277 * 89.19521 * 18 17 15 20 20 O 1.42895 * 113.61182 * 139.98189 * 19 18 17 21 21 C 1.42904 * 113.99850 * 149.99825 * 20 19 18 22 22 C 1.50696 * 109.47273 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00472 * 269.73216 * 22 21 20 24 24 C 1.38235 * 120.00241 * 179.77013 * 23 22 21 25 25 C 1.38234 * 119.99812 * 0.49655 * 24 23 22 26 26 C 1.38238 * 120.00215 * 359.75761 * 25 24 23 27 27 C 1.38232 * 119.99540 * 359.97438 * 26 25 24 28 28 C 1.53779 * 87.08139 * 25.43224 * 19 18 17 29 29 H 1.08997 * 109.47109 * 299.99653 * 1 2 3 30 30 H 1.09003 * 109.46793 * 59.99554 * 1 2 3 31 31 H 1.08998 * 109.47107 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46566 * 59.99983 * 3 2 1 33 33 H 1.09000 * 109.46759 * 300.00574 * 3 2 1 34 34 H 1.08998 * 109.46791 * 305.83970 * 4 3 2 35 35 H 1.08992 * 109.46984 * 185.83497 * 4 3 2 36 36 H 1.09001 * 109.46894 * 30.00325 * 6 5 4 37 37 H 1.09003 * 109.47284 * 149.99985 * 6 5 4 38 38 H 0.97002 * 119.99090 * 180.02562 * 10 9 7 39 39 H 1.09005 * 112.85350 * 42.58724 * 17 15 5 40 40 H 1.09000 * 113.61309 * 334.64757 * 18 17 15 41 41 H 1.09001 * 113.61658 * 203.74307 * 18 17 15 42 42 H 1.08996 * 113.61127 * 270.80405 * 19 18 17 43 43 H 1.09000 * 109.46641 * 60.00007 * 21 20 19 44 44 H 1.08999 * 109.47301 * 300.00019 * 21 20 19 45 45 H 1.08001 * 119.99488 * 359.97438 * 23 22 21 46 46 H 1.08000 * 120.00136 * 180.22920 * 24 23 22 47 47 H 1.08003 * 120.00065 * 179.72673 * 25 24 23 48 48 H 1.07995 * 120.00376 * 179.97438 * 26 25 24 49 49 H 1.08004 * 119.99559 * 179.97438 * 27 26 25 50 50 H 1.09008 * 113.61111 * 89.11123 * 28 19 18 51 51 H 1.08990 * 113.61847 * 220.01958 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9781 0.5822 -1.2592 6 6 4.0310 -0.8756 -1.3954 7 6 5.3903 -1.3706 -0.9732 8 1 6.1397 -0.6696 -0.6367 9 6 5.6768 -2.7186 -1.0156 10 7 6.8629 -3.1506 -0.6467 11 14 4.3803 -3.9312 -1.5970 12 1 4.4964 -4.1134 -3.0662 13 1 4.5837 -5.2365 -0.9188 14 1 3.0300 -3.4077 -1.2684 15 6 4.3368 1.3689 -2.2931 16 8 4.3779 2.5729 -2.1530 17 6 4.6866 0.7527 -3.6231 18 6 4.9265 1.7857 -4.7367 19 6 6.4004 1.8000 -4.2978 20 8 7.3218 1.8577 -5.3884 21 6 8.5472 2.5250 -5.0794 22 6 9.4387 2.5264 -6.2943 23 6 10.3298 1.4896 -6.4991 24 6 11.1442 1.4886 -7.6161 25 6 11.0747 2.5295 -8.5230 26 6 10.1873 3.5690 -8.3156 27 6 9.3691 3.5672 -7.2015 28 6 6.1720 0.3780 -3.7588 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8498 0.5563 0.8340 35 1 3.9784 2.1751 0.1051 36 1 3.2671 -1.3275 -0.7627 37 1 3.8510 -1.1502 -2.4348 38 1 7.0645 -4.0990 -0.6769 39 1 4.0061 -0.0489 -3.9103 40 1 4.4127 2.7327 -4.5718 41 1 4.7737 1.3892 -5.7404 42 1 6.6174 2.5332 -3.5209 43 1 9.0478 2.0052 -4.2624 44 1 8.3365 3.5521 -4.7816 45 1 10.3873 0.6788 -5.7880 46 1 11.8377 0.6767 -7.7779 47 1 11.7141 2.5309 -9.3934 48 1 10.1334 4.3824 -9.0239 49 1 8.6761 4.3795 -7.0392 50 1 6.3596 -0.4034 -4.4953 51 1 6.6634 0.1886 -2.8046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610476124.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:35 Heat of formation + Delta-G solvation = -74.050214 kcal Electronic energy + Delta-G solvation = -30778.842590 eV Core-core repulsion = 26644.492001 eV Total energy + Delta-G solvation = -4134.350589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17141 -39.33876 -38.15102 -37.34931 -35.51772 -34.94977 -32.52831 -31.76768 -30.97344 -30.16482 -27.62531 -26.55293 -26.01907 -25.22760 -24.83579 -22.64653 -22.50848 -22.39871 -21.37409 -20.14501 -17.68046 -17.32654 -16.94463 -16.87730 -16.33589 -16.00723 -15.64799 -15.57447 -15.49634 -15.22167 -14.79319 -14.60614 -14.19954 -14.12603 -13.77000 -13.47919 -13.35634 -13.02331 -12.75986 -12.58563 -12.26200 -12.08589 -12.07298 -11.89513 -11.73305 -11.65421 -11.48935 -11.46952 -11.10023 -10.98031 -10.85113 -10.75225 -10.58266 -10.29657 -10.19872 -10.06018 -9.54624 -9.51294 -9.12308 -9.01674 -8.98609 -8.89382 -8.63274 -7.74464 -6.15260 -4.14808 1.20314 1.33016 3.23283 3.24040 3.32041 3.35786 3.56036 3.76303 4.04253 4.17754 4.34342 4.75628 4.80920 4.92246 4.97099 5.00953 5.08332 5.15445 5.18284 5.25142 5.28615 5.35504 5.39473 5.39717 5.47056 5.54610 5.55811 5.61000 5.61267 5.64640 5.73981 5.89015 5.90705 5.97634 6.02079 6.12695 6.25570 6.31235 6.36035 6.41172 6.48834 6.53851 6.56746 6.61537 6.74742 6.89318 6.90695 7.33277 7.39483 7.51735 7.54306 8.15749 8.46112 8.84047 8.92401 9.45337 10.97302 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.002717 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.757799 B =10301.217440 C =11987.906340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.579 5.579 6 C 0.209 3.791 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.078 3.922 10 N -0.893 5.893 11 Si 0.866 3.134 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.260 1.260 15 C 0.535 3.465 16 O -0.574 6.574 17 C -0.129 4.129 18 C -0.115 4.115 19 C 0.061 3.939 20 O -0.369 6.369 21 C 0.099 3.901 22 C -0.084 4.084 23 C -0.098 4.098 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.127 4.127 27 C -0.101 4.101 28 C -0.124 4.124 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.122 0.878 50 H 0.093 0.907 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 10.326 -9.254 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.030 4.030 4 C -0.005 4.005 5 N -0.308 5.308 6 C 0.088 3.912 7 C -0.571 4.571 8 H 0.094 0.906 9 C -0.126 4.126 10 N -0.531 5.531 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.185 1.185 15 C 0.324 3.676 16 O -0.456 6.456 17 C -0.150 4.150 18 C -0.153 4.153 19 C 0.004 3.996 20 O -0.289 6.289 21 C 0.023 3.977 22 C -0.084 4.084 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.138 4.138 26 C -0.145 4.145 27 C -0.119 4.119 28 C -0.162 4.162 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.144 0.856 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.111 0.889 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.794 10.502 -9.302 14.051 hybrid contribution -0.794 -0.695 0.021 1.055 sum -1.588 9.807 -9.281 13.595 Atomic orbital electron populations 1.22691 0.82101 1.02375 0.99339 1.88035 1.18752 1.27675 1.95237 1.23055 0.95240 0.84814 0.99843 1.21376 0.90880 1.00249 0.87980 1.47801 1.62873 1.08735 1.11418 1.19899 0.98590 0.75268 0.97454 1.21332 0.97410 0.93268 1.45116 0.90587 1.24812 0.95105 0.98031 0.94607 1.69894 1.20683 1.15083 1.47461 0.86982 0.83115 0.81228 0.79372 1.19998 1.21101 1.18485 1.19956 0.75949 0.86196 0.85530 1.90572 1.55736 1.14918 1.84366 1.22039 1.00099 0.99677 0.93163 1.23090 0.94780 0.99545 0.97888 1.23906 0.88634 0.98011 0.89071 1.87973 1.26178 1.77629 1.37075 1.21339 0.85320 0.96887 0.94174 1.19715 0.96753 0.95258 0.96673 1.21167 0.95194 0.97571 0.97640 1.21160 0.99634 0.98708 0.94724 1.21166 0.98880 0.94505 0.99226 1.21119 0.96720 0.98855 0.97758 1.21084 0.98502 0.98358 0.93937 1.23318 0.93108 0.96629 1.03126 0.94540 0.94574 0.89948 0.92985 0.93451 0.89312 0.88948 0.93407 0.95515 0.92531 0.88036 0.90267 0.89127 0.89167 0.92220 0.92618 0.85632 0.85969 0.86231 0.86118 0.85992 0.88890 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.32 9.23 -35.23 -0.33 -6.65 16 3 C 0.05 0.74 6.28 37.16 0.23 0.97 16 4 C 0.12 2.11 5.92 -4.04 -0.02 2.09 16 5 N -0.58 -11.78 2.44 -175.06 -0.43 -12.20 16 6 C 0.21 4.67 3.94 -5.19 -0.02 4.65 16 7 C -0.53 -13.85 9.11 -34.44 -0.31 -14.16 16 8 H 0.08 2.20 8.04 -52.49 -0.42 1.78 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 11 Si 0.87 20.15 27.47 -169.99 -4.67 15.49 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 15 C 0.54 10.69 6.96 -10.99 -0.08 10.61 16 16 O -0.57 -12.12 15.03 5.56 0.08 -12.04 16 17 C -0.13 -2.31 3.22 -90.96 -0.29 -2.61 16 18 C -0.12 -1.83 7.27 -25.92 -0.19 -2.02 16 19 C 0.06 1.02 3.94 -25.92 -0.10 0.92 16 20 O -0.37 -5.94 10.34 -35.23 -0.36 -6.31 16 21 C 0.10 1.36 5.90 36.00 0.21 1.58 16 22 C -0.08 -1.08 5.51 -104.63 -0.58 -1.66 16 23 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 27 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 28 C -0.12 -2.28 7.44 -25.91 -0.19 -2.47 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 35 H 0.09 1.59 7.26 -51.93 -0.38 1.21 16 36 H 0.05 1.11 5.86 -51.93 -0.30 0.80 16 37 H 0.03 0.59 5.48 -51.93 -0.28 0.30 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.10 1.76 6.78 -51.93 -0.35 1.41 16 40 H 0.08 1.27 7.52 -51.93 -0.39 0.88 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.56 7.57 -51.93 -0.39 1.17 16 43 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 44 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 45 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 47 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 49 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 50 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 51 H 0.09 1.95 7.29 -51.93 -0.38 1.57 16 LS Contribution 416.39 15.07 6.27 6.27 Total: -1.00 -30.97 416.39 -9.34 -40.32 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.40 Total: 6.87 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.29 Total: -6.70 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.35 Total: -37.25 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.61 Total: -24.99 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.97 -9.34 -40.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610476124.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.734 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds