Wall clock time and date at job start Wed Apr 1 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99931 * 2 1 4 4 C 1.50695 * 109.46864 * 180.02562 * 3 2 1 5 5 C 1.29819 * 118.55809 * 359.97438 * 4 3 2 6 6 C 1.50142 * 123.28803 * 180.35576 * 5 4 3 7 7 N 1.46847 * 110.27707 * 342.98355 * 6 5 4 8 8 C 1.46888 * 111.00336 * 287.52450 * 7 6 5 9 9 C 1.53004 * 109.47109 * 196.79165 * 8 7 6 10 10 H 1.08998 * 109.47106 * 302.14171 * 9 8 7 11 11 O 1.42896 * 109.46941 * 62.14288 * 9 8 7 12 12 C 1.53007 * 109.46945 * 182.13874 * 9 8 7 13 13 O 1.42902 * 109.46880 * 174.99727 * 12 9 8 14 14 C 1.35673 * 117.00034 * 179.97438 * 13 12 9 15 15 C 1.39307 * 119.81613 * 180.02562 * 14 13 12 16 16 C 1.36439 * 120.18272 * 180.28164 * 15 14 13 17 17 C 1.40833 * 119.81122 * 359.50035 * 16 15 14 18 18 C 1.41213 * 120.18011 * 180.23125 * 17 16 15 19 19 H 1.08005 * 120.00275 * 205.85028 * 18 17 16 20 20 C 1.39894 * 120.00304 * 25.85246 * 18 17 16 21 21 N 1.30889 * 119.99663 * 18.22311 * 20 18 17 22 22 Si 1.86798 * 120.00410 * 198.22308 * 20 18 17 23 23 H 1.48500 * 109.47075 * 94.87843 * 22 20 18 24 24 H 1.48495 * 109.47057 * 214.88144 * 22 20 18 25 25 H 1.48501 * 109.47000 * 334.87820 * 22 20 18 26 26 C 1.40835 * 119.63984 * 0.49870 * 17 16 15 27 27 C 1.36427 * 119.81194 * 359.75478 * 26 17 16 28 28 C 1.47244 * 110.20027 * 50.91536 * 7 6 5 29 29 C 1.50314 * 118.55083 * 180.02562 * 4 3 2 30 30 H 1.09009 * 109.46779 * 299.99623 * 1 2 3 31 31 H 1.08998 * 109.47512 * 59.99235 * 1 2 3 32 32 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46847 * 60.00695 * 3 2 1 34 34 H 1.09003 * 109.46746 * 300.00354 * 3 2 1 35 35 H 1.07999 * 118.35693 * 0.39748 * 5 4 3 36 36 H 1.08999 * 109.34813 * 222.73288 * 6 5 4 37 37 H 1.09001 * 109.32319 * 103.23001 * 6 5 4 38 38 H 1.08997 * 109.47563 * 76.79129 * 8 7 6 39 39 H 1.09006 * 109.47350 * 316.78815 * 8 7 6 40 40 H 0.96706 * 114.00341 * 59.99917 * 11 9 8 41 41 H 1.09005 * 109.46625 * 55.00320 * 12 9 8 42 42 H 1.08998 * 109.47365 * 295.00298 * 12 9 8 43 43 H 1.07997 * 119.91095 * 0.02562 * 15 14 13 44 44 H 1.08006 * 120.09569 * 179.72593 * 16 15 14 45 45 H 0.96996 * 119.99843 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.09203 * 179.73604 * 26 17 16 47 47 H 1.08004 * 119.90984 * 179.97438 * 27 26 17 48 48 H 1.08996 * 109.63647 * 50.88660 * 28 7 6 49 49 H 1.09006 * 109.63247 * 171.49608 * 28 7 6 50 50 H 1.08998 * 109.42810 * 43.42729 * 29 4 3 51 51 H 1.08999 * 109.42915 * 283.57080 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.0411 0.0008 -0.0006 6 6 5.5229 -0.2409 0.0066 7 7 6.2392 0.9781 -0.3900 8 6 6.0810 1.2378 -1.8270 9 6 7.1460 2.2362 -2.2852 10 1 7.0556 3.1552 -1.7061 11 8 8.4441 1.6731 -2.0855 12 6 6.9481 2.5474 -3.7702 13 8 7.8674 3.5657 -4.1701 14 6 7.8233 3.9606 -5.4673 15 6 8.6938 4.9492 -5.9205 16 6 8.6520 5.3560 -7.2222 17 6 7.7325 4.7660 -8.1108 18 6 7.6858 5.1776 -9.4608 19 1 6.7726 5.0691 -10.0273 20 6 8.8223 5.7260 -10.0646 21 7 10.0020 5.5401 -9.5291 22 14 8.6564 6.7236 -11.6352 23 1 8.5706 8.1673 -11.2978 24 1 9.8404 6.4867 -12.4995 25 1 7.4261 6.3099 -12.3567 26 6 6.8559 3.7672 -7.6445 27 6 6.9071 3.3755 -6.3387 28 6 5.7728 2.1244 0.4079 29 6 4.3329 2.4459 -0.0002 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.3819 -0.8547 -0.0066 36 1 5.7614 -1.0430 -0.6918 37 1 5.8358 -0.5335 1.0089 38 1 5.0903 1.6518 -2.0146 39 1 6.1956 0.3052 -2.3796 40 1 8.5954 0.8511 -2.5720 41 1 5.9278 2.8936 -3.9359 42 1 7.1259 1.6464 -4.3571 43 1 9.4011 5.3978 -5.2386 44 1 9.3246 6.1257 -7.5709 45 1 10.7900 5.9206 -9.9475 46 1 6.1449 3.3128 -8.3187 47 1 6.2353 2.6100 -5.9793 48 1 5.8048 1.8704 1.4674 49 1 6.4097 2.9879 0.2157 50 1 3.9056 3.1567 0.7071 51 1 4.3284 2.8820 -0.9991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614221850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:53 Heat of formation + Delta-G solvation = -88.059822 kcal Electronic energy + Delta-G solvation = -29911.204693 eV Core-core repulsion = 25776.246601 eV Total energy + Delta-G solvation = -4134.958092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.32266 -38.92407 -38.23466 -37.05944 -35.91366 -33.59128 -33.29462 -31.34555 -30.69622 -29.65828 -29.01340 -28.00302 -26.59077 -25.47587 -24.58029 -23.95078 -22.79745 -21.26286 -20.58980 -20.56312 -18.06433 -17.34017 -16.99011 -16.88718 -16.67119 -16.48248 -16.32610 -15.96683 -15.26223 -15.23449 -14.92825 -14.66682 -14.16095 -14.03706 -13.91714 -13.82409 -13.39825 -13.25687 -12.90699 -12.69484 -12.56669 -12.28169 -12.17338 -12.12264 -11.96873 -11.77330 -11.69390 -11.45628 -11.36533 -11.15209 -10.96096 -10.87676 -10.73704 -10.56545 -10.28177 -9.95894 -9.86993 -9.79260 -9.31616 -9.09749 -9.02362 -8.46972 -7.63900 -7.01374 -6.71315 -4.24658 1.84050 2.78546 2.95382 3.09415 3.12995 3.21766 3.22737 3.48876 3.96181 4.11534 4.43917 4.53300 4.60933 4.63403 4.72072 4.78943 4.85138 4.87466 4.92157 4.96265 5.02488 5.07613 5.18381 5.21594 5.23313 5.32222 5.34178 5.43047 5.50848 5.59002 5.62718 5.67253 5.68419 5.75722 6.06668 6.06882 6.21069 6.23732 6.42699 6.71961 6.76332 6.77479 6.88699 6.98333 7.12100 7.19299 7.46387 7.56568 7.79554 7.83440 8.01583 8.20796 8.46349 8.66437 8.90815 8.99636 10.23790 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.001850 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.193187 B =15133.039916 C =16284.488968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.097 3.903 4 C -0.137 4.137 5 C -0.168 4.168 6 C 0.080 3.920 7 N -0.515 5.515 8 C 0.019 3.981 9 C 0.119 3.881 10 H 0.102 0.898 11 O -0.539 6.539 12 C 0.038 3.962 13 O -0.317 6.317 14 C -0.007 4.007 15 C -0.119 4.119 16 C -0.132 4.132 17 C 0.088 3.912 18 C -0.465 4.465 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.798 5.798 22 Si 0.907 3.093 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.198 4.198 27 C -0.169 4.169 28 C 0.052 3.948 29 C -0.122 4.122 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.370 0.630 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.280 0.720 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 -9.193 18.985 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C 0.021 3.979 4 C -0.138 4.138 5 C -0.187 4.187 6 C -0.048 4.048 7 N -0.236 5.236 8 C -0.110 4.110 9 C 0.059 3.941 10 H 0.120 0.880 11 O -0.343 6.343 12 C -0.039 4.039 13 O -0.232 6.232 14 C -0.050 4.050 15 C -0.138 4.138 16 C -0.152 4.152 17 C 0.086 3.914 18 C -0.495 4.495 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.425 5.425 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.217 4.217 27 C -0.187 4.187 28 C -0.076 4.076 29 C -0.160 4.160 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.216 0.784 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.141 0.859 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.097 0.903 49 H 0.104 0.896 50 H 0.097 0.903 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.220 -8.800 19.558 24.684 hybrid contribution -1.646 0.101 -1.501 2.230 sum -13.866 -8.699 18.057 24.372 Atomic orbital electron populations 1.22752 0.80710 1.02920 1.00098 1.87832 1.19831 1.27707 1.95494 1.21305 0.91511 0.84673 1.00425 1.20761 0.93568 0.95463 1.03986 1.22838 0.98162 0.98185 0.99517 1.21184 0.88339 0.93028 1.02258 1.62583 1.54401 1.03139 1.03517 1.22852 0.98611 1.00306 0.89220 1.21808 0.83171 0.96027 0.93088 0.88014 1.86629 1.31744 1.43337 1.72598 1.23127 0.93590 0.91846 0.95376 1.85890 1.57355 1.54100 1.25877 1.18623 1.01866 1.02268 0.82292 1.19837 0.99329 0.98343 0.96285 1.20934 1.01962 1.01483 0.90774 1.17594 0.90859 0.89580 0.93361 1.19455 0.97603 1.36346 0.96137 0.90566 1.25875 0.94636 0.94577 0.99090 1.69845 0.98867 1.34844 1.38908 0.86323 0.78844 0.80524 0.81141 1.19410 1.20371 1.18700 1.20565 1.05137 1.01502 0.94542 1.20395 1.00682 1.02427 0.95245 1.22290 0.92503 0.94506 0.98281 1.20991 0.96573 0.95447 1.02993 0.94023 0.93899 0.89472 0.92390 0.92364 0.86034 0.89733 0.89284 0.92671 0.90354 0.78403 0.92755 0.92942 0.88404 0.85910 0.90936 0.88788 0.88990 0.90281 0.89582 0.90306 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.53 8.88 -35.23 -0.31 -3.85 16 3 C 0.10 0.79 6.28 36.00 0.23 1.02 16 4 C -0.14 -1.22 5.39 -100.92 -0.54 -1.76 16 5 C -0.17 -1.52 9.00 -35.96 -0.32 -1.84 16 6 C 0.08 0.68 5.94 -5.27 -0.03 0.65 16 7 N -0.52 -5.07 4.88 -236.12 -1.15 -6.22 16 8 C 0.02 0.19 4.10 -3.83 -0.02 0.17 16 9 C 0.12 1.53 3.29 -26.73 -0.09 1.45 16 10 H 0.10 1.37 6.88 -51.93 -0.36 1.02 16 11 O -0.54 -7.66 13.21 -40.08 -0.53 -8.19 16 12 C 0.04 0.59 4.37 37.16 0.16 0.75 16 13 O -0.32 -6.55 10.09 -23.57 -0.24 -6.79 16 14 C -0.01 -0.17 6.71 -38.78 -0.26 -0.43 16 15 C -0.12 -2.93 9.92 -39.83 -0.40 -3.32 16 16 C -0.13 -3.49 8.63 -39.25 -0.34 -3.82 16 17 C 0.09 2.38 5.56 -106.80 -0.59 1.78 16 18 C -0.47 -12.42 9.03 -37.83 -0.34 -12.76 16 19 H 0.08 1.96 7.91 -52.48 -0.42 1.54 16 20 C 0.08 1.90 5.11 -17.33 -0.09 1.81 16 21 N -0.80 -20.87 11.07 55.55 0.61 -20.26 16 22 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 26 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 27 C -0.17 -3.83 8.96 -39.83 -0.36 -4.19 16 28 C 0.05 0.47 5.81 -3.60 -0.02 0.45 16 29 C -0.12 -0.99 5.25 -28.03 -0.15 -1.14 16 30 H 0.04 0.21 8.14 -51.92 -0.42 -0.22 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.12 1.17 6.54 -52.49 -0.34 0.83 16 36 H 0.08 0.68 7.79 -51.93 -0.40 0.27 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.57 5.31 -51.93 -0.28 0.29 16 39 H 0.08 0.75 7.76 -51.93 -0.40 0.35 16 40 H 0.37 4.10 9.05 45.56 0.41 4.51 16 41 H 0.05 0.80 7.65 -51.93 -0.40 0.40 16 42 H 0.05 0.78 7.65 -51.93 -0.40 0.39 16 43 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 44 H 0.12 3.30 6.27 -52.48 -0.33 2.98 16 45 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 46 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 47 H 0.09 1.80 6.27 -52.48 -0.33 1.47 16 48 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 49 H 0.09 0.81 6.96 -51.93 -0.36 0.44 16 50 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.08 0.70 6.64 -51.93 -0.34 0.36 16 LS Contribution 405.31 15.07 6.11 6.11 Total: -1.00 -30.68 405.31 -10.27 -40.95 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.30 Total: 9.63 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -2.43 Total: -25.16 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: -0.54 Total: -26.48 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.08 Total: -18.83 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.68 -10.27 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614221850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.106 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds