Wall clock time and date at job start Wed Apr 1 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99931 * 2 1 4 4 C 1.50695 * 109.46864 * 180.02562 * 3 2 1 5 5 C 1.29819 * 118.55809 * 359.97438 * 4 3 2 6 6 C 1.50142 * 123.28803 * 180.35576 * 5 4 3 7 7 N 1.46847 * 110.27707 * 342.98355 * 6 5 4 8 8 C 1.46888 * 111.00336 * 287.52450 * 7 6 5 9 9 C 1.53004 * 109.47109 * 196.79165 * 8 7 6 10 10 H 1.08998 * 109.47106 * 302.14171 * 9 8 7 11 11 O 1.42896 * 109.46941 * 62.14288 * 9 8 7 12 12 C 1.53007 * 109.46945 * 182.13874 * 9 8 7 13 13 O 1.42902 * 109.46880 * 174.99727 * 12 9 8 14 14 C 1.35673 * 117.00034 * 179.97438 * 13 12 9 15 15 C 1.39307 * 119.81613 * 180.02562 * 14 13 12 16 16 C 1.36439 * 120.18272 * 180.28164 * 15 14 13 17 17 C 1.40833 * 119.81122 * 359.50035 * 16 15 14 18 18 C 1.41213 * 120.18011 * 180.23125 * 17 16 15 19 19 H 1.08005 * 120.00275 * 205.85028 * 18 17 16 20 20 C 1.39894 * 120.00304 * 25.85246 * 18 17 16 21 21 N 1.30889 * 119.99663 * 18.22311 * 20 18 17 22 22 Si 1.86798 * 120.00410 * 198.22308 * 20 18 17 23 23 H 1.48500 * 109.47075 * 94.87843 * 22 20 18 24 24 H 1.48495 * 109.47057 * 214.88144 * 22 20 18 25 25 H 1.48501 * 109.47000 * 334.87820 * 22 20 18 26 26 C 1.40835 * 119.63984 * 0.49870 * 17 16 15 27 27 C 1.36427 * 119.81194 * 359.75478 * 26 17 16 28 28 C 1.47244 * 110.20027 * 50.91536 * 7 6 5 29 29 C 1.50314 * 118.55083 * 180.02562 * 4 3 2 30 30 H 1.09009 * 109.46779 * 299.99623 * 1 2 3 31 31 H 1.08998 * 109.47512 * 59.99235 * 1 2 3 32 32 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46847 * 60.00695 * 3 2 1 34 34 H 1.09003 * 109.46746 * 300.00354 * 3 2 1 35 35 H 1.07999 * 118.35693 * 0.39748 * 5 4 3 36 36 H 1.08999 * 109.34813 * 222.73288 * 6 5 4 37 37 H 1.09001 * 109.32319 * 103.23001 * 6 5 4 38 38 H 1.08997 * 109.47563 * 76.79129 * 8 7 6 39 39 H 1.09006 * 109.47350 * 316.78815 * 8 7 6 40 40 H 0.96706 * 114.00341 * 59.99917 * 11 9 8 41 41 H 1.09005 * 109.46625 * 55.00320 * 12 9 8 42 42 H 1.08998 * 109.47365 * 295.00298 * 12 9 8 43 43 H 1.07997 * 119.91095 * 0.02562 * 15 14 13 44 44 H 1.08006 * 120.09569 * 179.72593 * 16 15 14 45 45 H 0.96996 * 119.99843 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.09203 * 179.73604 * 26 17 16 47 47 H 1.08004 * 119.90984 * 179.97438 * 27 26 17 48 48 H 1.08996 * 109.63647 * 50.88660 * 28 7 6 49 49 H 1.09006 * 109.63247 * 171.49608 * 28 7 6 50 50 H 1.08998 * 109.42810 * 43.42729 * 29 4 3 51 51 H 1.08999 * 109.42915 * 283.57080 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.0411 0.0008 -0.0006 6 6 5.5229 -0.2409 0.0066 7 7 6.2392 0.9781 -0.3900 8 6 6.0810 1.2378 -1.8270 9 6 7.1460 2.2362 -2.2852 10 1 7.0556 3.1552 -1.7061 11 8 8.4441 1.6731 -2.0855 12 6 6.9481 2.5474 -3.7702 13 8 7.8674 3.5657 -4.1701 14 6 7.8233 3.9606 -5.4673 15 6 8.6938 4.9492 -5.9205 16 6 8.6520 5.3560 -7.2222 17 6 7.7325 4.7660 -8.1108 18 6 7.6858 5.1776 -9.4608 19 1 6.7726 5.0691 -10.0273 20 6 8.8223 5.7260 -10.0646 21 7 10.0020 5.5401 -9.5291 22 14 8.6564 6.7236 -11.6352 23 1 8.5706 8.1673 -11.2978 24 1 9.8404 6.4867 -12.4995 25 1 7.4261 6.3099 -12.3567 26 6 6.8559 3.7672 -7.6445 27 6 6.9071 3.3755 -6.3387 28 6 5.7728 2.1244 0.4079 29 6 4.3329 2.4459 -0.0002 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.3819 -0.8547 -0.0066 36 1 5.7614 -1.0430 -0.6918 37 1 5.8358 -0.5335 1.0089 38 1 5.0903 1.6518 -2.0146 39 1 6.1956 0.3052 -2.3796 40 1 8.5954 0.8511 -2.5720 41 1 5.9278 2.8936 -3.9359 42 1 7.1259 1.6464 -4.3571 43 1 9.4011 5.3978 -5.2386 44 1 9.3246 6.1257 -7.5709 45 1 10.7900 5.9206 -9.9475 46 1 6.1449 3.3128 -8.3187 47 1 6.2353 2.6100 -5.9793 48 1 5.8048 1.8704 1.4674 49 1 6.4097 2.9879 0.2157 50 1 3.9056 3.1567 0.7071 51 1 4.3284 2.8820 -0.9991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614221850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:51 Heat of formation + Delta-G solvation = -108.165076 kcal Electronic energy + Delta-G solvation = -29912.076522 eV Core-core repulsion = 25776.246601 eV Total energy + Delta-G solvation = -4135.829921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.11232 -40.47897 -39.00960 -38.39891 -37.34219 -35.17155 -34.31450 -32.19237 -31.86030 -31.28845 -30.82606 -28.76296 -27.44830 -26.61410 -25.98560 -24.62191 -23.90234 -22.69006 -22.32969 -21.80990 -19.25481 -18.99654 -18.36125 -17.73842 -17.40422 -17.35377 -17.08210 -17.01044 -16.90369 -16.18854 -16.05729 -15.73541 -15.50497 -15.39127 -14.93666 -14.82307 -14.73271 -14.15177 -14.07526 -13.94070 -13.89875 -13.51927 -13.34301 -13.27064 -13.13765 -12.83398 -12.81093 -12.61760 -12.54975 -12.41859 -12.36710 -12.09122 -11.85810 -11.69129 -11.58335 -11.53850 -11.20288 -10.92837 -10.87371 -10.84128 -9.74430 -9.56743 -9.20994 -8.91837 -8.59527 -6.22826 0.94867 1.01935 1.17972 1.39930 1.52374 1.53495 2.23040 2.36111 2.70302 2.72725 3.09995 3.55455 3.69720 3.78436 3.82385 3.94934 4.04894 4.10076 4.11633 4.21751 4.28481 4.29063 4.33081 4.36712 4.37353 4.44098 4.45681 4.52369 4.58217 4.61661 4.70618 4.79863 4.84369 4.86835 4.94094 4.97705 5.01556 5.06162 5.10339 5.21406 5.28267 5.53185 5.57738 5.64401 5.81628 5.88130 6.02493 6.05812 6.10333 6.25816 6.26491 6.56435 6.80563 6.91551 6.95159 7.10162 8.37732 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.001850 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.193187 B =15133.039916 C =16284.488968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.095 3.905 4 C -0.142 4.142 5 C -0.173 4.173 6 C 0.083 3.917 7 N -0.525 5.525 8 C 0.030 3.970 9 C 0.130 3.870 10 H 0.094 0.906 11 O -0.558 6.558 12 C 0.030 3.970 13 O -0.330 6.330 14 C 0.002 3.998 15 C -0.134 4.134 16 C -0.151 4.151 17 C 0.055 3.945 18 C -0.500 4.500 19 H 0.076 0.924 20 C 0.033 3.967 21 N -0.832 5.832 22 Si 0.982 3.018 23 H -0.264 1.264 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.207 4.207 27 C -0.165 4.165 28 C 0.051 3.949 29 C -0.117 4.117 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.382 0.618 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.287 0.713 46 H 0.106 0.894 47 H 0.128 0.872 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.603 -9.884 19.535 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.019 3.981 4 C -0.143 4.143 5 C -0.192 4.192 6 C -0.045 4.045 7 N -0.247 5.247 8 C -0.098 4.098 9 C 0.070 3.930 10 H 0.112 0.888 11 O -0.364 6.364 12 C -0.046 4.046 13 O -0.245 6.245 14 C -0.042 4.042 15 C -0.153 4.153 16 C -0.170 4.170 17 C 0.053 3.947 18 C -0.530 4.530 19 H 0.094 0.906 20 C -0.181 4.181 21 N -0.459 5.459 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.182 1.182 26 C -0.226 4.226 27 C -0.184 4.184 28 C -0.077 4.077 29 C -0.155 4.155 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.098 0.902 46 H 0.124 0.876 47 H 0.146 0.854 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.111 0.889 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.533 -9.516 20.133 26.058 hybrid contribution -1.282 0.206 -1.484 1.972 sum -14.815 -9.309 18.648 25.571 Atomic orbital electron populations 1.22912 0.79380 1.03853 1.00830 1.87800 1.21386 1.28251 1.95646 1.21359 0.91096 0.84601 1.01052 1.20931 0.94173 0.95579 1.03579 1.22813 0.98240 0.98081 1.00062 1.21194 0.87956 0.92552 1.02782 1.62552 1.55023 1.03866 1.03210 1.22684 0.97504 0.99866 0.89780 1.21727 0.83632 0.96520 0.91169 0.88824 1.86596 1.32531 1.44299 1.73008 1.23501 0.93184 0.90824 0.97119 1.85884 1.58899 1.55570 1.24180 1.18687 1.00795 1.01151 0.83537 1.20003 1.00166 0.99172 0.95955 1.20849 1.02503 1.01996 0.91683 1.17953 0.91999 0.90785 0.93987 1.19700 0.98302 1.38410 0.96557 0.90575 1.26746 0.93844 0.94960 1.02556 1.69901 0.99692 1.35606 1.40692 0.85189 0.79083 0.78663 0.76730 1.18833 1.19413 1.18152 1.20813 1.04959 1.01106 0.95769 1.20690 1.00715 1.02649 0.94315 1.22302 0.92820 0.94023 0.98539 1.20948 0.96046 0.95466 1.03054 0.92989 0.93445 0.88540 0.91290 0.92124 0.86745 0.89112 0.88656 0.92396 0.89389 0.76936 0.91511 0.91885 0.87518 0.87512 0.90232 0.87608 0.85429 0.89669 0.90277 0.88943 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.91 8.88 -148.98 -1.32 -8.23 16 3 C 0.09 1.39 6.28 71.23 0.45 1.84 16 4 C -0.14 -2.27 5.39 -15.39 -0.08 -2.36 16 5 C -0.17 -2.86 9.00 26.69 0.24 -2.62 16 6 C 0.08 1.26 5.94 85.39 0.51 1.77 16 7 N -0.52 -9.36 4.88 -900.95 -4.39 -13.76 16 8 C 0.03 0.55 4.10 86.31 0.35 0.91 16 9 C 0.13 3.10 3.29 30.60 0.10 3.20 16 10 H 0.09 2.41 6.88 -2.39 -0.02 2.39 16 11 O -0.56 -14.99 13.21 -144.35 -1.91 -16.89 16 12 C 0.03 0.86 4.37 71.98 0.31 1.18 16 13 O -0.33 -13.18 10.09 -85.27 -0.86 -14.04 16 14 C 0.00 0.10 6.71 22.79 0.15 0.25 16 15 C -0.13 -6.69 9.92 22.11 0.22 -6.47 16 16 C -0.15 -8.20 8.63 22.48 0.19 -8.01 16 17 C 0.05 3.02 5.56 -21.28 -0.12 2.90 16 18 C -0.50 -27.25 9.03 23.40 0.21 -27.04 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 20 C 0.03 1.68 5.11 85.23 0.44 2.12 16 21 N -0.83 -44.48 11.07 21.82 0.24 -44.24 16 22 Si 0.98 38.72 29.60 68.60 2.03 40.76 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 26 C -0.21 -10.18 9.74 22.48 0.22 -9.96 16 27 C -0.17 -7.25 8.96 22.11 0.20 -7.05 16 28 C 0.05 0.83 5.81 86.26 0.50 1.33 16 29 C -0.12 -1.70 5.25 29.75 0.16 -1.54 16 30 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.11 2.08 6.54 -2.91 -0.02 2.06 16 36 H 0.09 1.27 7.79 -2.39 -0.02 1.25 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.06 5.31 -2.39 -0.01 1.04 16 39 H 0.09 1.46 7.76 -2.38 -0.02 1.44 16 40 H 0.38 7.79 9.05 -74.05 -0.67 7.12 16 41 H 0.07 1.78 7.65 -2.38 -0.02 1.76 16 42 H 0.06 1.70 7.65 -2.39 -0.02 1.68 16 43 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 44 H 0.11 6.02 6.27 -2.91 -0.02 6.00 16 45 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 46 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 47 H 0.13 4.60 6.27 -2.91 -0.02 4.59 16 48 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 49 H 0.08 1.39 6.96 -2.38 -0.02 1.37 16 50 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.07 1.18 6.64 -2.39 -0.02 1.16 16 Total: -1.00 -66.12 405.31 -0.65 -66.77 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: 0.27 Total: 37.68 kcal Atomic # 6 Polarization: -53.33 SS G_CDS: 5.30 Total: -48.03 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -4.15 Total: -58.00 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -4.09 Total: -39.17 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.76 kcal Total: -66.12 -0.65 -66.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614221850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.396 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds