Wall clock time and date at job start Wed Apr 1 2020 04:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31513 * 120.00028 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 119.99858 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47354 * 89.99590 * 8 6 4 10 10 H 1.48501 * 109.46908 * 209.99697 * 8 6 4 11 11 H 1.48506 * 109.47061 * 329.99324 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21603 * 119.99956 * 0.28069 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.39723 * 120.00178 * 180.02562 * 15 13 12 17 17 C 1.35331 * 125.80652 * 359.68868 * 16 15 13 18 18 C 1.41855 * 107.32369 * 179.85341 * 17 16 15 19 19 C 1.48455 * 126.40026 * 180.16098 * 18 17 16 20 20 N 1.34053 * 126.67235 * 179.97438 * 19 18 17 21 21 N 1.28993 * 107.26385 * 179.83325 * 20 19 18 22 22 N 1.28731 * 108.94466 * 0.43525 * 21 20 19 23 23 H 0.96996 * 125.33797 * 179.75886 * 22 21 20 24 24 N 1.28868 * 109.31801 * 359.72006 * 22 21 20 25 25 C 1.35922 * 107.20115 * 0.40847 * 18 17 16 26 26 N 1.36606 * 125.80768 * 179.97438 * 16 15 13 27 27 C 1.46500 * 125.53670 * 359.97438 * 26 16 15 28 28 C 1.53003 * 109.46878 * 180.02562 * 27 26 16 29 29 C 1.53000 * 109.47223 * 300.00057 * 27 26 16 30 30 C 1.53006 * 109.46982 * 60.00226 * 27 26 16 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 34 34 H 0.97003 * 120.00277 * 180.02562 * 7 6 4 35 35 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 36 36 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 37 37 H 1.07996 * 126.33791 * 359.96562 * 17 16 15 38 38 H 1.08003 * 125.92088 * 179.76870 * 25 18 17 39 39 H 1.08991 * 109.47236 * 60.00320 * 28 27 26 40 40 H 1.09004 * 109.47042 * 180.02562 * 28 27 26 41 41 H 1.08996 * 109.46833 * 299.99854 * 28 27 26 42 42 H 1.09001 * 109.46678 * 60.00165 * 29 27 26 43 43 H 1.09004 * 109.46628 * 179.97438 * 29 27 26 44 44 H 1.08995 * 109.47140 * 300.00404 * 29 27 26 45 45 H 1.09004 * 109.46804 * 59.99760 * 30 27 26 46 46 H 1.08994 * 109.46908 * 179.97438 * 30 27 26 47 47 H 1.08991 * 109.46916 * 299.99919 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8727 2.6998 10 1 0.9761 1.9950 3.9069 11 1 0.8473 2.1765 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8525 1.1603 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7141 0.0395 -4.6652 17 6 2.4221 1.3466 -4.8597 18 6 2.6985 1.6434 -6.2191 19 6 2.5305 2.9594 -6.8852 20 7 2.7904 3.2460 -8.1687 21 7 2.5097 4.4923 -8.3470 22 7 2.0980 4.9914 -7.2341 23 1 1.8266 5.9127 -7.0987 24 7 2.1023 4.0748 -6.3283 25 6 3.1405 0.4963 -6.7991 26 7 3.1506 -0.4852 -5.8485 27 6 3.5629 -1.8744 -6.0634 28 6 3.9835 -2.0617 -7.5225 29 6 4.7427 -2.2039 -5.1467 30 6 2.3935 -2.8085 -5.7452 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.9027 -0.5285 4.4376 35 1 2.2490 -1.6318 -1.1527 36 1 2.8167 -1.5973 -3.4167 37 1 2.0495 2.0364 -4.1170 38 1 3.4336 0.3808 -7.8321 39 1 4.8166 -1.3964 -7.7487 40 1 4.2898 -3.0955 -7.6825 41 1 3.1432 -1.8269 -8.1758 42 1 4.4434 -2.0704 -4.1072 43 1 5.0491 -3.2377 -5.3063 44 1 5.5757 -1.5385 -5.3733 45 1 1.5529 -2.5737 -6.3983 46 1 2.7001 -3.8420 -5.9055 47 1 2.0943 -2.6749 -4.7057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735963913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:52 Heat of formation + Delta-G solvation = 160.660956 kcal Electronic energy + Delta-G solvation = -30834.462267 eV Core-core repulsion = 26671.334676 eV Total energy + Delta-G solvation = -4163.127590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.29604 -41.79495 -39.39859 -36.84068 -35.39946 -34.34039 -34.08113 -33.13005 -32.38467 -30.01268 -29.87615 -28.30762 -27.82045 -27.21085 -25.19527 -24.40140 -24.12061 -22.53140 -21.32210 -20.57448 -19.84558 -19.39890 -18.93986 -17.99364 -17.15625 -17.00671 -16.29577 -15.80945 -15.58960 -15.13568 -14.80621 -14.67913 -14.44236 -14.07877 -13.73237 -13.66235 -13.38040 -13.26524 -12.95444 -12.81707 -12.63834 -12.34241 -12.23085 -12.19433 -12.17548 -11.93928 -11.85317 -11.63730 -11.40830 -11.34401 -11.25844 -10.96841 -10.96533 -10.79752 -10.22629 -10.14270 -9.70526 -9.37613 -9.24154 -8.78588 -8.43286 -8.25670 -7.30586 -6.22609 -4.25415 1.13081 1.65203 2.24383 2.41866 2.42851 3.09120 3.23877 3.36204 3.38681 3.41447 3.80620 3.99172 4.13140 4.31088 4.34684 4.36059 4.44276 4.67102 4.92055 5.06087 5.08436 5.12739 5.22510 5.27340 5.33100 5.38352 5.50506 5.54194 5.59597 5.67230 5.78170 5.79436 6.03111 6.22372 6.33073 6.36412 6.39808 6.47246 6.55485 6.75451 6.89910 7.05657 7.19554 7.31924 7.41822 7.48376 7.57188 8.24499 8.28719 8.56971 8.75542 9.06068 9.38318 10.89456 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003104 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.081931 B = 9019.375661 C =11295.238944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.255 3.745 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.260 1.260 12 N -0.711 5.711 13 C 0.702 3.298 14 O -0.570 6.570 15 N -0.671 5.671 16 C 0.276 3.724 17 C -0.172 4.172 18 C -0.095 4.095 19 C 0.268 3.732 20 N -0.283 5.283 21 N -0.062 5.062 22 N -0.234 5.234 23 H 0.472 0.528 24 N -0.293 5.293 25 C 0.036 3.964 26 N -0.445 5.445 27 C 0.151 3.849 28 C -0.155 4.155 29 C -0.164 4.164 30 C -0.163 4.163 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.268 0.732 35 H 0.391 0.609 36 H 0.398 0.602 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 -1.255 -23.775 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.152 3.848 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.185 1.185 12 N -0.363 5.363 13 C 0.402 3.598 14 O -0.446 6.446 15 N -0.323 5.323 16 C 0.073 3.927 17 C -0.200 4.200 18 C -0.106 4.106 19 C -0.012 4.012 20 N -0.157 5.157 21 N -0.058 5.058 22 N -0.080 5.080 23 H 0.326 0.674 24 N -0.144 5.144 25 C -0.098 4.098 26 N -0.129 5.129 27 C 0.068 3.932 28 C -0.212 4.212 29 C -0.222 4.222 30 C -0.221 4.221 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.224 0.776 36 H 0.235 0.765 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.448 -0.129 -24.017 24.142 hybrid contribution -0.554 0.003 0.820 0.990 sum 1.893 -0.126 -23.197 23.275 Atomic orbital electron populations 1.22485 0.99357 1.00840 0.99465 1.19034 0.89948 0.94480 0.81373 0.93091 1.21014 1.33365 1.14496 0.88475 0.90222 1.24808 0.95476 0.96723 0.95458 1.69861 1.44886 1.40122 0.98067 0.86880 0.80490 0.83605 0.77573 1.20293 1.22163 1.18451 1.45409 1.69070 1.13547 1.08254 1.15823 0.78855 0.85284 0.79880 1.90828 1.56179 1.13975 1.83640 1.42241 1.70264 1.13090 1.06680 1.16728 1.05596 0.90563 0.79810 1.21182 1.09605 0.93820 0.95382 1.16312 1.12894 0.87243 0.94200 1.22907 0.97609 0.93134 0.87524 1.76020 1.19747 1.04081 1.15812 1.78803 1.12283 1.04469 1.10203 1.47715 1.42435 1.13855 1.04006 0.67421 1.75110 1.22636 0.98221 1.18461 1.21435 1.07633 0.86210 0.94506 1.44164 1.52729 1.08700 1.07272 1.20912 0.95414 0.79051 0.97851 1.22114 1.02670 1.03509 0.92952 1.22297 0.97405 1.03015 0.99439 1.22290 0.97602 0.99335 1.02866 0.94313 0.92896 0.93396 0.92247 0.77573 0.76523 0.80838 0.80785 0.91050 0.90266 0.91087 0.91781 0.90203 0.91136 0.91191 0.90208 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 8.96 37.16 0.33 -3.26 16 2 C 0.26 5.95 2.15 -69.09 -0.15 5.80 16 3 H 0.05 1.32 6.64 -51.93 -0.34 0.97 16 4 C -0.54 -14.15 9.31 -34.44 -0.32 -14.47 16 5 H 0.08 2.20 7.98 -52.48 -0.42 1.78 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 8 Si 0.88 21.54 24.37 -169.99 -4.14 17.39 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 12 N -0.71 -13.63 5.07 -59.81 -0.30 -13.94 16 13 C 0.70 13.21 8.49 -86.92 -0.74 12.47 16 14 O -0.57 -12.75 13.10 5.27 0.07 -12.68 16 15 N -0.67 -9.71 4.69 -15.65 -0.07 -9.78 16 16 C 0.28 4.05 6.95 -151.97 -1.06 3.00 16 17 C -0.17 -2.90 9.67 -39.24 -0.38 -3.28 16 18 C -0.10 -1.40 6.12 -105.13 -0.64 -2.04 16 19 C 0.27 3.93 8.18 -156.30 -1.28 2.65 16 20 N -0.28 -3.92 12.53 32.16 0.40 -3.51 16 21 N -0.06 -0.75 13.47 60.35 0.81 0.06 16 22 N -0.23 -2.42 7.90 60.35 0.48 -1.94 16 23 H 0.47 2.54 8.96 -340.37 -3.05 -0.51 16 24 N -0.29 -4.11 12.40 32.17 0.40 -3.71 16 25 C 0.04 0.42 10.29 -16.24 -0.17 0.25 16 26 N -0.45 -5.00 2.63 -101.81 -0.27 -5.27 16 27 C 0.15 1.16 1.05 -131.81 -0.14 1.03 16 28 C -0.16 -0.86 7.34 37.16 0.27 -0.59 16 29 C -0.16 -1.20 8.46 37.16 0.31 -0.89 16 30 C -0.16 -1.16 8.46 37.16 0.31 -0.84 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.39 6.43 8.55 -40.82 -0.35 6.08 16 36 H 0.40 4.50 4.86 -40.82 -0.20 4.30 16 37 H 0.17 3.46 5.78 -52.49 -0.30 3.16 16 38 H 0.18 1.60 7.11 -52.48 -0.37 1.23 16 39 H 0.07 0.40 7.83 -51.93 -0.41 -0.01 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.39 7.83 -51.93 -0.41 -0.01 16 42 H 0.06 0.54 5.82 -51.93 -0.30 0.24 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.52 5.82 -51.93 -0.30 0.21 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -34.66 377.26 -8.67 -43.32 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.77 Total: 7.76 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -3.73 Total: 1.93 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: 2.22 Total: -63.40 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.39 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.66 -8.67 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.985 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds