Wall clock time and date at job start Wed Apr 1 2020 04:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31513 * 120.00028 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 119.99858 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47354 * 89.99590 * 8 6 4 10 10 H 1.48501 * 109.46908 * 209.99697 * 8 6 4 11 11 H 1.48506 * 109.47061 * 329.99324 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21603 * 119.99956 * 0.28069 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.39723 * 120.00178 * 180.02562 * 15 13 12 17 17 C 1.35331 * 125.80652 * 359.68868 * 16 15 13 18 18 C 1.41855 * 107.32369 * 179.85341 * 17 16 15 19 19 C 1.48455 * 126.40026 * 180.16098 * 18 17 16 20 20 N 1.34053 * 126.67235 * 179.97438 * 19 18 17 21 21 N 1.28993 * 107.26385 * 179.83325 * 20 19 18 22 22 N 1.28731 * 108.94466 * 0.43525 * 21 20 19 23 23 H 0.96996 * 125.33797 * 179.75886 * 22 21 20 24 24 N 1.28868 * 109.31801 * 359.72006 * 22 21 20 25 25 C 1.35922 * 107.20115 * 0.40847 * 18 17 16 26 26 N 1.36606 * 125.80768 * 179.97438 * 16 15 13 27 27 C 1.46500 * 125.53670 * 359.97438 * 26 16 15 28 28 C 1.53003 * 109.46878 * 180.02562 * 27 26 16 29 29 C 1.53000 * 109.47223 * 300.00057 * 27 26 16 30 30 C 1.53006 * 109.46982 * 60.00226 * 27 26 16 31 31 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 32 32 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 34 34 H 0.97003 * 120.00277 * 180.02562 * 7 6 4 35 35 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 36 36 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 37 37 H 1.07996 * 126.33791 * 359.96562 * 17 16 15 38 38 H 1.08003 * 125.92088 * 179.76870 * 25 18 17 39 39 H 1.08991 * 109.47236 * 60.00320 * 28 27 26 40 40 H 1.09004 * 109.47042 * 180.02562 * 28 27 26 41 41 H 1.08996 * 109.46833 * 299.99854 * 28 27 26 42 42 H 1.09001 * 109.46678 * 60.00165 * 29 27 26 43 43 H 1.09004 * 109.46628 * 179.97438 * 29 27 26 44 44 H 1.08995 * 109.47140 * 300.00404 * 29 27 26 45 45 H 1.09004 * 109.46804 * 59.99760 * 30 27 26 46 46 H 1.08994 * 109.46908 * 179.97438 * 30 27 26 47 47 H 1.08991 * 109.46916 * 299.99919 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8727 2.6998 10 1 0.9761 1.9950 3.9069 11 1 0.8473 2.1765 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8525 1.1603 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7141 0.0395 -4.6652 17 6 2.4221 1.3466 -4.8597 18 6 2.6985 1.6434 -6.2191 19 6 2.5305 2.9594 -6.8852 20 7 2.7904 3.2460 -8.1687 21 7 2.5097 4.4923 -8.3470 22 7 2.0980 4.9914 -7.2341 23 1 1.8266 5.9127 -7.0987 24 7 2.1023 4.0748 -6.3283 25 6 3.1405 0.4963 -6.7991 26 7 3.1506 -0.4852 -5.8485 27 6 3.5629 -1.8744 -6.0634 28 6 3.9835 -2.0617 -7.5225 29 6 4.7427 -2.2039 -5.1467 30 6 2.3935 -2.8085 -5.7452 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.9027 -0.5285 4.4376 35 1 2.2490 -1.6318 -1.1527 36 1 2.8167 -1.5973 -3.4167 37 1 2.0495 2.0364 -4.1170 38 1 3.4336 0.3808 -7.8321 39 1 4.8166 -1.3964 -7.7487 40 1 4.2898 -3.0955 -7.6825 41 1 3.1432 -1.8269 -8.1758 42 1 4.4434 -2.0704 -4.1072 43 1 5.0491 -3.2377 -5.3063 44 1 5.5757 -1.5385 -5.3733 45 1 1.5529 -2.5737 -6.3983 46 1 2.7001 -3.8420 -5.9055 47 1 2.0943 -2.6749 -4.7057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735963913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:51 Heat of formation + Delta-G solvation = 135.773358 kcal Electronic energy + Delta-G solvation = -30835.541474 eV Core-core repulsion = 26671.334676 eV Total energy + Delta-G solvation = -4164.206798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.28731 -42.83435 -40.86912 -37.58971 -37.09008 -35.69360 -35.15126 -34.40610 -34.10207 -31.73555 -30.83165 -29.18948 -28.37083 -28.03879 -27.19862 -25.40878 -25.11789 -23.96266 -22.45242 -21.89912 -21.27698 -20.51287 -19.95094 -19.51767 -18.15504 -17.99555 -17.96209 -17.34690 -16.68529 -16.42805 -16.11872 -15.90634 -15.45673 -15.11244 -15.05604 -14.93696 -14.61392 -14.50318 -14.27594 -14.09680 -13.75089 -13.56503 -13.24277 -13.19331 -13.10362 -12.95179 -12.86739 -12.74461 -12.73721 -12.36430 -12.19961 -12.14777 -12.04101 -12.01135 -11.94111 -11.58520 -11.33241 -11.25172 -10.98409 -10.86083 -9.97747 -9.45626 -8.46067 -8.36922 -6.42485 0.15067 0.63838 1.17351 1.24334 1.29576 1.38326 1.47817 1.54648 2.03894 2.18313 2.27981 2.42149 2.96414 3.00003 3.25681 3.33550 3.57123 3.78189 3.89655 4.08510 4.40173 4.43849 4.47719 4.55399 4.56442 4.62951 4.67403 4.71620 4.73209 4.77900 4.84098 4.88428 4.91201 4.99593 5.07624 5.11703 5.21958 5.24185 5.33226 5.37783 5.46718 5.59430 5.69995 5.75426 5.96816 6.12040 6.33699 6.38913 6.59946 7.09970 7.23580 7.28214 7.58554 8.78089 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003104 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.081931 B = 9019.375661 C =11295.238944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.263 3.737 3 H 0.024 0.976 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.032 3.968 7 N -0.933 5.933 8 Si 0.935 3.065 9 H -0.259 1.259 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.707 5.707 13 C 0.702 3.298 14 O -0.606 6.606 15 N -0.650 5.650 16 C 0.266 3.734 17 C -0.201 4.201 18 C -0.121 4.121 19 C 0.257 3.743 20 N -0.294 5.294 21 N -0.058 5.058 22 N -0.209 5.209 23 H 0.491 0.509 24 N -0.319 5.319 25 C 0.065 3.935 26 N -0.432 5.432 27 C 0.142 3.858 28 C -0.153 4.153 29 C -0.164 4.164 30 C -0.163 4.163 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.270 0.730 35 H 0.405 0.595 36 H 0.415 0.585 37 H 0.137 0.863 38 H 0.207 0.793 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.108 0.892 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 -2.464 -26.333 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.158 3.842 3 H 0.042 0.958 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.168 4.168 7 N -0.572 5.572 8 Si 0.763 3.237 9 H -0.185 1.185 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.360 5.360 13 C 0.402 3.598 14 O -0.485 6.485 15 N -0.303 5.303 16 C 0.062 3.938 17 C -0.230 4.230 18 C -0.132 4.132 19 C -0.023 4.023 20 N -0.167 5.167 21 N -0.054 5.054 22 N -0.059 5.059 23 H 0.349 0.651 24 N -0.171 5.171 25 C -0.069 4.069 26 N -0.114 5.114 27 C 0.061 3.939 28 C -0.210 4.210 29 C -0.221 4.221 30 C -0.220 4.220 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.241 0.759 36 H 0.255 0.745 37 H 0.154 0.846 38 H 0.224 0.776 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.127 0.873 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.127 0.873 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.521 -1.388 -26.625 26.780 hybrid contribution -0.494 0.367 1.508 1.629 sum 2.027 -1.021 -25.116 25.218 Atomic orbital electron populations 1.22374 0.97916 1.01758 0.99429 1.18657 0.90951 0.92932 0.81695 0.95776 1.21217 1.32362 1.13667 0.89676 0.92164 1.25486 0.96789 0.99178 0.95344 1.69960 1.46666 1.41878 0.98649 0.86060 0.79892 0.80555 0.77213 1.18498 1.22079 1.18723 1.45053 1.69378 1.14078 1.07523 1.15847 0.78699 0.84783 0.80472 1.90834 1.57622 1.15730 1.84362 1.41817 1.69133 1.13663 1.05658 1.16590 1.06240 0.90309 0.80686 1.20916 1.11438 0.94564 0.96051 1.16416 1.14724 0.88494 0.93579 1.22994 0.98016 0.93340 0.87924 1.75989 1.20546 1.04719 1.15425 1.78722 1.12084 1.04109 1.10438 1.47717 1.40916 1.14320 1.02955 0.65138 1.75071 1.23495 0.98895 1.19624 1.21895 1.04566 0.85085 0.95401 1.44442 1.51210 1.10118 1.05635 1.21339 0.95884 0.76847 0.99794 1.22159 1.02834 1.05223 0.90806 1.22332 0.96842 1.04678 0.98290 1.22322 0.97133 1.00763 1.01809 0.93661 0.91479 0.94038 0.92036 0.75919 0.74505 0.84568 0.77625 0.90871 0.87786 0.90748 0.93332 0.87317 0.91841 0.91674 0.87345 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.77 8.96 71.98 0.64 -6.12 16 2 C 0.26 12.33 2.15 44.24 0.10 12.42 16 3 H 0.02 1.28 6.64 -2.39 -0.02 1.27 16 4 C -0.53 -28.36 9.31 25.60 0.24 -28.12 16 5 H 0.06 3.39 7.98 -2.91 -0.02 3.36 16 6 C 0.03 1.78 5.45 84.66 0.46 2.24 16 7 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 8 Si 0.94 44.49 24.37 68.60 1.67 46.16 16 9 H -0.26 -11.57 6.87 99.48 0.68 -10.89 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.26 -12.52 6.53 99.48 0.65 -11.87 16 12 N -0.71 -27.18 5.07 -461.41 -2.34 -29.52 16 13 C 0.70 26.81 8.49 179.05 1.52 28.33 16 14 O -0.61 -28.14 13.10 -4.04 -0.05 -28.20 16 15 N -0.65 -18.68 4.69 -321.68 -1.51 -20.19 16 16 C 0.27 7.76 6.95 130.63 0.91 8.67 16 17 C -0.20 -7.04 9.67 22.49 0.22 -6.82 16 18 C -0.12 -3.56 6.12 -20.20 -0.12 -3.68 16 19 C 0.26 7.53 8.18 137.38 1.12 8.65 16 20 N -0.29 -7.86 12.53 -52.18 -0.65 -8.51 16 21 N -0.06 -1.35 13.47 37.02 0.50 -0.85 16 22 N -0.21 -4.18 7.90 37.02 0.29 -3.89 16 23 H 0.49 4.84 8.96 -347.54 -3.12 1.73 16 24 N -0.32 -9.03 12.40 -52.13 -0.65 -9.68 16 25 C 0.07 1.42 10.29 83.41 0.86 2.28 16 26 N -0.43 -8.98 2.63 -476.03 -1.25 -10.23 16 27 C 0.14 1.78 1.05 3.61 0.00 1.79 16 28 C -0.15 -1.08 7.34 71.98 0.53 -0.55 16 29 C -0.16 -1.95 8.46 71.98 0.61 -1.35 16 30 C -0.16 -1.82 8.46 71.98 0.61 -1.21 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.04 1.84 3.27 -2.39 -0.01 1.83 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.41 13.15 8.55 -92.71 -0.79 12.35 16 36 H 0.41 8.97 4.86 -92.71 -0.45 8.52 16 37 H 0.14 5.84 5.78 -2.91 -0.02 5.82 16 38 H 0.21 3.11 7.11 -2.91 -0.02 3.09 16 39 H 0.07 0.53 7.83 -2.39 -0.02 0.51 16 40 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.07 0.52 7.83 -2.39 -0.02 0.50 16 42 H 0.05 0.73 5.82 -2.39 -0.01 0.72 16 43 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.05 0.70 5.82 -2.39 -0.01 0.68 16 Total: -1.00 -77.43 377.26 0.63 -76.81 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -3.38 Total: 26.47 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 7.69 Total: 16.53 kcal Atomic # 7 Polarization: -132.46 SS G_CDS: -5.31 Total: -137.77 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.05 Total: -28.20 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.67 Total: 46.16 kcal Total: -77.43 0.63 -76.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.581 kcal (2) G-P(sol) polarization free energy of solvation -77.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds