Wall clock time and date at job start Wed Apr 1 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99906 * 2 1 4 4 C 1.53001 * 109.47091 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47316 * 65.00041 * 4 3 2 6 6 C 1.42893 * 114.00467 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47389 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.88334 * 308.87508 * 7 6 5 9 9 C 1.55152 * 111.00250 * 72.80366 * 7 6 5 10 10 C 1.54343 * 103.01833 * 153.38266 * 9 7 6 11 11 N 1.47019 * 107.26190 * 338.13875 * 10 9 7 12 12 C 1.34777 * 125.64510 * 178.84903 * 11 10 9 13 13 O 1.21283 * 120.00372 * 179.69203 * 12 11 10 14 14 C 1.50706 * 120.00205 * 359.41741 * 12 11 10 15 15 C 1.50698 * 109.47457 * 180.27230 * 14 12 11 16 16 C 1.37638 * 120.12899 * 264.99915 * 15 14 12 17 17 C 1.38614 * 120.24767 * 180.02562 * 16 15 14 18 18 C 1.38655 * 120.49920 * 359.97438 * 17 16 15 19 19 C 1.37592 * 120.25201 * 0.02562 * 18 17 16 20 20 C 1.40703 * 120.12559 * 84.72427 * 15 14 12 21 21 C 1.41397 * 120.24238 * 359.97438 * 20 15 14 22 22 H 1.08002 * 119.99981 * 333.89621 * 21 20 15 23 23 C 1.39950 * 119.99653 * 153.89913 * 21 20 15 24 24 N 1.30821 * 120.00053 * 343.70540 * 23 21 20 25 25 Si 1.86799 * 119.99552 * 163.70890 * 23 21 20 26 26 H 1.48499 * 109.47250 * 94.96568 * 25 23 21 27 27 H 1.48507 * 109.46743 * 214.95874 * 25 23 21 28 28 H 1.48494 * 109.47373 * 334.96218 * 25 23 21 29 29 C 1.47418 * 108.70683 * 358.58538 * 11 10 9 30 30 H 1.09002 * 109.46793 * 299.99743 * 1 2 3 31 31 H 1.08996 * 109.47461 * 59.99880 * 1 2 3 32 32 H 1.09004 * 109.47432 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47249 * 60.00434 * 3 2 1 34 34 H 1.09002 * 109.47616 * 300.00257 * 3 2 1 35 35 H 1.09000 * 109.47311 * 305.00265 * 4 3 2 36 36 H 1.09003 * 109.47585 * 184.99779 * 4 3 2 37 37 H 1.09005 * 109.47153 * 59.99912 * 6 5 4 38 38 H 1.09002 * 109.47311 * 300.00115 * 6 5 4 39 39 H 1.08996 * 110.71878 * 271.93773 * 9 7 6 40 40 H 1.08992 * 110.72058 * 35.03772 * 9 7 6 41 41 H 1.08993 * 109.98820 * 218.66447 * 10 9 7 42 42 H 1.09003 * 109.77743 * 97.49056 * 10 9 7 43 43 H 1.08997 * 109.46837 * 300.27617 * 14 12 11 44 44 H 1.09000 * 109.46870 * 60.27276 * 14 12 11 45 45 H 1.07994 * 119.87551 * 0.02562 * 16 15 14 46 46 H 1.08001 * 119.74887 * 179.97438 * 17 16 15 47 47 H 1.08007 * 119.87217 * 179.97438 * 18 17 16 48 48 H 1.08002 * 120.12813 * 179.97438 * 19 18 17 49 49 H 0.96997 * 119.99856 * 180.02562 * 24 23 21 50 50 H 1.09003 * 110.36889 * 143.19514 * 29 11 10 51 51 H 1.09003 * 110.36584 * 265.51489 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5797 -1.2220 6 6 5.3811 0.4191 -1.3247 7 6 5.7245 -0.2339 -2.6650 8 1 5.1336 -1.1366 -2.8201 9 6 5.5326 0.7657 -3.8360 10 6 6.5165 0.2429 -4.9041 11 7 7.5285 -0.5644 -4.2073 12 6 8.5534 -1.2151 -4.7925 13 8 9.3347 -1.8494 -4.1156 14 6 8.7252 -1.1597 -6.2887 15 6 9.9327 -1.9690 -6.6861 16 6 11.1522 -1.3535 -6.8539 17 6 12.2644 -2.0954 -7.2199 18 6 12.1627 -3.4636 -7.4206 19 6 10.9536 -4.1000 -7.2585 20 6 9.8189 -3.3578 -6.8814 21 6 8.5725 -4.0020 -6.7058 22 1 7.8320 -3.5745 -6.0459 23 6 8.2986 -5.1934 -7.3869 24 7 9.0342 -5.5463 -8.4095 25 14 6.8823 -6.2797 -6.8358 26 1 5.6724 -5.9588 -7.6347 27 1 7.2447 -7.7057 -7.0376 28 1 6.6040 -6.0384 -5.3973 29 6 7.2402 -0.5391 -2.7618 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8515 0.5682 0.8409 36 1 3.9786 2.1765 0.0889 37 1 5.7350 -0.2135 -0.5106 38 1 5.8628 1.3949 -1.2623 39 1 4.5074 0.7352 -4.2049 40 1 5.8004 1.7763 -3.5281 41 1 6.9953 1.0805 -5.4113 42 1 5.9827 -0.3746 -5.6265 43 1 7.8381 -1.5696 -6.7716 44 1 8.8630 -0.1244 -6.6005 45 1 11.2430 -0.2884 -6.6998 46 1 13.2174 -1.6041 -7.3497 47 1 13.0358 -4.0318 -7.7060 48 1 10.8766 -5.1657 -7.4157 49 1 8.8441 -6.3720 -8.8818 50 1 7.4615 -1.5078 -2.3137 51 1 7.8173 0.2463 -2.2736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776973377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:52 Heat of formation + Delta-G solvation = -111.226219 kcal Electronic energy + Delta-G solvation = -30120.219174 eV Core-core repulsion = 25984.256512 eV Total energy + Delta-G solvation = -4135.962662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.81193 -38.77901 -37.96532 -37.31518 -36.49388 -33.56229 -32.53830 -31.49898 -30.38648 -29.41120 -29.32232 -27.17261 -26.59492 -25.37927 -24.61421 -23.00774 -22.75301 -20.87375 -20.56002 -19.96194 -18.60092 -17.36393 -17.17963 -17.08506 -16.53474 -16.29291 -15.72218 -15.56213 -15.40607 -15.31104 -14.69883 -14.39984 -14.19686 -13.74409 -13.66388 -13.43035 -13.40382 -12.86317 -12.75570 -12.56067 -12.45391 -12.33008 -11.99536 -11.79782 -11.67505 -11.51016 -11.41149 -11.16908 -11.11394 -10.98763 -10.94982 -10.88671 -10.73204 -10.63778 -10.33817 -10.07238 -9.85491 -9.42518 -9.31817 -9.12910 -9.08732 -8.27849 -7.25277 -7.23087 -6.67916 -4.28114 2.82660 2.98234 3.11336 3.17830 3.21878 3.32293 3.38112 3.39590 3.56793 3.99446 4.43818 4.52868 4.61605 4.71658 4.73117 4.79059 4.92333 4.97602 5.04958 5.08144 5.13131 5.15954 5.28402 5.32230 5.34139 5.40111 5.44303 5.55932 5.72161 5.77995 5.85315 5.91069 5.97143 6.12306 6.16174 6.17856 6.34142 6.49611 6.56373 6.66154 6.74498 6.86199 6.94391 7.14729 7.35636 7.48298 7.70157 7.93310 8.00648 8.14097 8.18875 8.37765 8.70838 8.88062 8.98045 9.07698 10.26193 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.002354 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.771055 B =11894.003570 C =13614.868063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.377 6.377 6 C 0.075 3.925 7 C -0.101 4.101 8 H 0.095 0.905 9 C -0.120 4.120 10 C 0.101 3.899 11 N -0.631 5.631 12 C 0.532 3.468 13 O -0.519 6.519 14 C -0.064 4.064 15 C -0.182 4.182 16 C -0.081 4.081 17 C -0.240 4.240 18 C -0.107 4.107 19 C -0.159 4.159 20 C 0.129 3.871 21 C -0.455 4.455 22 H 0.073 0.927 23 C 0.077 3.923 24 N -0.796 5.796 25 Si 0.901 3.099 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.261 1.261 29 C 0.116 3.884 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.279 0.721 50 H 0.079 0.921 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.977 14.480 12.887 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.296 6.296 6 C -0.002 4.002 7 C -0.120 4.120 8 H 0.113 0.887 9 C -0.158 4.158 10 C -0.022 4.022 11 N -0.369 5.369 12 C 0.322 3.678 13 O -0.393 6.393 14 C -0.104 4.104 15 C -0.184 4.184 16 C -0.099 4.099 17 C -0.259 4.259 18 C -0.126 4.126 19 C -0.178 4.178 20 C 0.126 3.874 21 C -0.485 4.485 22 H 0.092 0.908 23 C -0.140 4.140 24 N -0.421 5.421 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.185 1.185 29 C -0.008 4.008 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.135 0.865 49 H 0.090 0.910 50 H 0.097 0.903 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.451 13.657 12.865 23.682 hybrid contribution -0.728 -0.155 0.404 0.847 sum -15.179 13.502 13.269 24.265 Atomic orbital electron populations 1.22752 0.81045 1.02962 0.99806 1.87982 1.19604 1.27230 1.95352 1.22562 0.92458 0.85574 1.00799 1.22497 0.93301 0.97538 0.88013 1.87947 1.22017 1.82050 1.37580 1.22381 0.81487 0.99234 0.97095 1.22320 0.96263 0.99816 0.93649 0.88671 1.22642 0.99740 0.98538 0.94863 1.22003 0.89688 0.94937 0.95599 1.48636 1.29111 1.52294 1.06901 1.21006 0.78497 0.77069 0.91199 1.90686 1.42727 1.40325 1.65559 1.20234 1.00333 0.99807 0.89986 1.19084 0.92673 0.93701 1.12936 1.20292 0.92982 0.96865 0.99792 1.20297 0.96906 0.94553 1.14171 1.20670 0.96744 0.94273 1.00873 1.21288 0.91383 0.99764 1.05384 1.17343 0.92862 0.89626 0.87538 1.19468 1.00390 1.05401 1.23192 0.90844 1.25874 0.97339 0.97533 0.93280 1.69822 1.36434 1.21879 1.14011 0.86411 0.81148 0.79386 0.80498 1.19606 1.20033 1.18479 1.21967 0.93104 1.02164 0.83526 0.94255 0.93969 0.89517 0.91936 0.92360 0.92426 0.91815 0.92830 0.93010 0.89802 0.90866 0.91521 0.91160 0.88630 0.90754 0.89816 0.89692 0.89606 0.86526 0.91028 0.90307 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.83 10.67 -40.08 -0.43 -4.26 16 3 C 0.06 0.46 6.32 37.16 0.23 0.70 16 4 C 0.06 0.49 6.32 37.16 0.23 0.72 16 5 O -0.38 -3.97 10.27 -40.08 -0.41 -4.38 16 6 C 0.07 0.70 5.39 37.16 0.20 0.90 16 7 C -0.10 -1.12 3.30 -88.47 -0.29 -1.42 16 8 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 9 C -0.12 -1.19 6.39 -24.89 -0.16 -1.35 16 10 C 0.10 1.23 6.49 -3.06 -0.02 1.21 16 11 N -0.63 -10.21 3.33 -170.51 -0.57 -10.77 16 12 C 0.53 11.06 7.46 -10.98 -0.08 10.98 16 13 O -0.52 -13.09 16.29 5.55 0.09 -13.00 16 14 C -0.06 -1.32 4.37 -29.03 -0.13 -1.44 16 15 C -0.18 -4.53 4.43 -103.91 -0.46 -4.99 16 16 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 17 C -0.24 -5.73 10.05 -39.29 -0.39 -6.13 16 18 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 19 C -0.16 -4.35 8.69 -38.88 -0.34 -4.69 16 20 C 0.13 3.54 5.56 -106.82 -0.59 2.94 16 21 C -0.45 -12.31 8.14 -37.74 -0.31 -12.61 16 22 H 0.07 1.96 6.67 -52.49 -0.35 1.61 16 23 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 24 N -0.80 -20.95 10.96 55.55 0.61 -20.34 16 25 Si 0.90 19.40 29.59 -169.99 -5.03 14.37 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 27 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 28 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 29 C 0.12 1.59 6.37 -2.53 -0.02 1.57 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.41 7.97 -51.93 -0.41 -0.01 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.10 1.95 7.08 -51.93 -0.37 1.58 16 44 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 45 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.08 1.80 8.06 -52.49 -0.42 1.37 16 47 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 48 H 0.12 3.27 6.20 -52.49 -0.33 2.95 16 49 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 50 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 51 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 LS Contribution 417.69 15.07 6.29 6.29 Total: -1.00 -33.56 417.69 -9.92 -43.48 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.60 Total: 4.38 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.88 Total: -15.78 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.04 Total: -31.11 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.75 Total: -21.63 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.56 -9.92 -43.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776973377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.746 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds