Wall clock time and date at job start Wed Apr 1 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99906 * 2 1 4 4 C 1.53001 * 109.47091 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47316 * 65.00041 * 4 3 2 6 6 C 1.42893 * 114.00467 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47389 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.88334 * 308.87508 * 7 6 5 9 9 C 1.55152 * 111.00250 * 72.80366 * 7 6 5 10 10 C 1.54343 * 103.01833 * 153.38266 * 9 7 6 11 11 N 1.47019 * 107.26190 * 338.13875 * 10 9 7 12 12 C 1.34777 * 125.64510 * 178.84903 * 11 10 9 13 13 O 1.21283 * 120.00372 * 179.69203 * 12 11 10 14 14 C 1.50706 * 120.00205 * 359.41741 * 12 11 10 15 15 C 1.50698 * 109.47457 * 180.27230 * 14 12 11 16 16 C 1.37638 * 120.12899 * 264.99915 * 15 14 12 17 17 C 1.38614 * 120.24767 * 180.02562 * 16 15 14 18 18 C 1.38655 * 120.49920 * 359.97438 * 17 16 15 19 19 C 1.37592 * 120.25201 * 0.02562 * 18 17 16 20 20 C 1.40703 * 120.12559 * 84.72427 * 15 14 12 21 21 C 1.41397 * 120.24238 * 359.97438 * 20 15 14 22 22 H 1.08002 * 119.99981 * 333.89621 * 21 20 15 23 23 C 1.39950 * 119.99653 * 153.89913 * 21 20 15 24 24 N 1.30821 * 120.00053 * 343.70540 * 23 21 20 25 25 Si 1.86799 * 119.99552 * 163.70890 * 23 21 20 26 26 H 1.48499 * 109.47250 * 94.96568 * 25 23 21 27 27 H 1.48507 * 109.46743 * 214.95874 * 25 23 21 28 28 H 1.48494 * 109.47373 * 334.96218 * 25 23 21 29 29 C 1.47418 * 108.70683 * 358.58538 * 11 10 9 30 30 H 1.09002 * 109.46793 * 299.99743 * 1 2 3 31 31 H 1.08996 * 109.47461 * 59.99880 * 1 2 3 32 32 H 1.09004 * 109.47432 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47249 * 60.00434 * 3 2 1 34 34 H 1.09002 * 109.47616 * 300.00257 * 3 2 1 35 35 H 1.09000 * 109.47311 * 305.00265 * 4 3 2 36 36 H 1.09003 * 109.47585 * 184.99779 * 4 3 2 37 37 H 1.09005 * 109.47153 * 59.99912 * 6 5 4 38 38 H 1.09002 * 109.47311 * 300.00115 * 6 5 4 39 39 H 1.08996 * 110.71878 * 271.93773 * 9 7 6 40 40 H 1.08992 * 110.72058 * 35.03772 * 9 7 6 41 41 H 1.08993 * 109.98820 * 218.66447 * 10 9 7 42 42 H 1.09003 * 109.77743 * 97.49056 * 10 9 7 43 43 H 1.08997 * 109.46837 * 300.27617 * 14 12 11 44 44 H 1.09000 * 109.46870 * 60.27276 * 14 12 11 45 45 H 1.07994 * 119.87551 * 0.02562 * 16 15 14 46 46 H 1.08001 * 119.74887 * 179.97438 * 17 16 15 47 47 H 1.08007 * 119.87217 * 179.97438 * 18 17 16 48 48 H 1.08002 * 120.12813 * 179.97438 * 19 18 17 49 49 H 0.96997 * 119.99856 * 180.02562 * 24 23 21 50 50 H 1.09003 * 110.36889 * 143.19514 * 29 11 10 51 51 H 1.09003 * 110.36584 * 265.51489 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5797 -1.2220 6 6 5.3811 0.4191 -1.3247 7 6 5.7245 -0.2339 -2.6650 8 1 5.1336 -1.1366 -2.8201 9 6 5.5326 0.7657 -3.8360 10 6 6.5165 0.2429 -4.9041 11 7 7.5285 -0.5644 -4.2073 12 6 8.5534 -1.2151 -4.7925 13 8 9.3347 -1.8494 -4.1156 14 6 8.7252 -1.1597 -6.2887 15 6 9.9327 -1.9690 -6.6861 16 6 11.1522 -1.3535 -6.8539 17 6 12.2644 -2.0954 -7.2199 18 6 12.1627 -3.4636 -7.4206 19 6 10.9536 -4.1000 -7.2585 20 6 9.8189 -3.3578 -6.8814 21 6 8.5725 -4.0020 -6.7058 22 1 7.8320 -3.5745 -6.0459 23 6 8.2986 -5.1934 -7.3869 24 7 9.0342 -5.5463 -8.4095 25 14 6.8823 -6.2797 -6.8358 26 1 5.6724 -5.9588 -7.6347 27 1 7.2447 -7.7057 -7.0376 28 1 6.6040 -6.0384 -5.3973 29 6 7.2402 -0.5391 -2.7618 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8515 0.5682 0.8409 36 1 3.9786 2.1765 0.0889 37 1 5.7350 -0.2135 -0.5106 38 1 5.8628 1.3949 -1.2623 39 1 4.5074 0.7352 -4.2049 40 1 5.8004 1.7763 -3.5281 41 1 6.9953 1.0805 -5.4113 42 1 5.9827 -0.3746 -5.6265 43 1 7.8381 -1.5696 -6.7716 44 1 8.8630 -0.1244 -6.6005 45 1 11.2430 -0.2884 -6.6998 46 1 13.2174 -1.6041 -7.3497 47 1 13.0358 -4.0318 -7.7060 48 1 10.8766 -5.1657 -7.4157 49 1 8.8441 -6.3720 -8.8818 50 1 7.4615 -1.5078 -2.3137 51 1 7.8173 0.2463 -2.2736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776973377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:51 Heat of formation + Delta-G solvation = -131.396103 kcal Electronic energy + Delta-G solvation = -30121.093806 eV Core-core repulsion = 25984.256512 eV Total energy + Delta-G solvation = -4136.837294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.14156 -39.73463 -39.22466 -38.50513 -37.67600 -35.51063 -33.84695 -33.03930 -31.35739 -31.11355 -30.30853 -28.74361 -27.24125 -26.99307 -25.95184 -23.99131 -23.43670 -22.82612 -21.84279 -21.33524 -20.06837 -19.05674 -18.12558 -17.95870 -17.74389 -17.31365 -17.19819 -16.44028 -16.33227 -16.25755 -16.12215 -15.95370 -15.59965 -15.34461 -14.96336 -14.53816 -14.49517 -14.38863 -13.82175 -13.77868 -13.56279 -13.46884 -13.35500 -13.18083 -12.90726 -12.81837 -12.76393 -12.67878 -12.51234 -12.39541 -12.14388 -12.12778 -11.95153 -11.75063 -11.59289 -11.32897 -11.21982 -11.03196 -10.79258 -10.63055 -10.51711 -9.59769 -9.22948 -9.16911 -8.60737 -6.30293 0.98042 1.12277 1.33509 1.45164 1.51679 1.77508 2.08180 2.18683 2.67072 2.77146 2.89839 3.49879 3.63031 3.76394 3.90243 4.10375 4.14835 4.24938 4.27776 4.32467 4.36462 4.39820 4.42594 4.44929 4.52428 4.53806 4.59403 4.60330 4.62789 4.63929 4.70913 4.73238 4.79717 4.81817 4.87321 4.91143 4.98488 5.04277 5.14435 5.19118 5.29394 5.36557 5.46498 5.54347 5.76709 6.03235 6.16040 6.19517 6.21021 6.33307 6.41693 6.56534 6.73250 6.98562 7.10403 7.33352 8.35775 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.002354 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.771055 B =11894.003570 C =13614.868063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.058 3.942 4 C 0.057 3.943 5 O -0.399 6.399 6 C 0.080 3.920 7 C -0.094 4.094 8 H 0.075 0.925 9 C -0.107 4.107 10 C 0.091 3.909 11 N -0.628 5.628 12 C 0.530 3.470 13 O -0.577 6.577 14 C -0.060 4.060 15 C -0.190 4.190 16 C -0.091 4.091 17 C -0.241 4.241 18 C -0.116 4.116 19 C -0.193 4.193 20 C 0.095 3.905 21 C -0.482 4.482 22 H 0.065 0.935 23 C 0.037 3.963 24 N -0.825 5.825 25 Si 0.969 3.031 26 H -0.254 1.254 27 H -0.265 1.265 28 H -0.271 1.271 29 C 0.111 3.889 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.107 0.893 48 H 0.097 0.903 49 H 0.286 0.714 50 H 0.052 0.948 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.416 17.215 13.532 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.018 4.018 4 C -0.019 4.019 5 O -0.319 6.319 6 C 0.003 3.997 7 C -0.113 4.113 8 H 0.093 0.907 9 C -0.144 4.144 10 C -0.030 4.030 11 N -0.363 5.363 12 C 0.321 3.679 13 O -0.456 6.456 14 C -0.099 4.099 15 C -0.192 4.192 16 C -0.109 4.109 17 C -0.260 4.260 18 C -0.135 4.135 19 C -0.212 4.212 20 C 0.092 3.908 21 C -0.512 4.512 22 H 0.083 0.917 23 C -0.177 4.177 24 N -0.451 5.451 25 Si 0.790 3.210 26 H -0.179 1.179 27 H -0.190 1.190 28 H -0.195 1.195 29 C -0.011 4.011 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.125 0.875 48 H 0.115 0.885 49 H 0.097 0.903 50 H 0.070 0.930 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.937 16.438 13.502 26.580 hybrid contribution -0.260 -0.894 0.233 0.960 sum -16.197 15.545 13.735 26.318 Atomic orbital electron populations 1.22885 0.79735 1.03467 1.00905 1.87930 1.21289 1.29008 1.95612 1.22746 0.92138 0.84850 1.02078 1.22730 0.93771 0.98634 0.86788 1.87906 1.22282 1.82677 1.39018 1.22320 0.81549 1.00189 0.95665 1.22185 0.93691 0.99774 0.95665 0.90678 1.22631 0.99621 0.99017 0.93169 1.22340 0.89364 0.95046 0.96299 1.48601 1.28194 1.51073 1.08445 1.20894 0.79031 0.76955 0.91052 1.90655 1.45319 1.43097 1.66547 1.20205 0.98481 1.01052 0.90177 1.19568 0.94808 0.93340 1.11495 1.20732 0.92516 0.98663 0.98980 1.20728 0.98455 0.94140 1.12690 1.20956 0.96637 0.95336 1.00538 1.21294 0.92803 0.99191 1.07919 1.17744 0.93170 0.91246 0.88597 1.19563 1.00552 1.06953 1.24085 0.91651 1.26632 0.99890 0.98280 0.92934 1.69872 1.37925 1.22559 1.14744 0.85397 0.78442 0.77799 0.79352 1.17876 1.18950 1.19544 1.22111 0.95457 1.01515 0.82041 0.92559 0.93411 0.89446 0.89465 0.92147 0.92774 0.89140 0.92955 0.90660 0.88713 0.88496 0.89262 0.91367 0.88948 0.87178 0.86519 0.86493 0.87526 0.88482 0.90304 0.92951 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.94 10.67 -144.34 -1.54 -9.48 16 3 C 0.06 0.74 6.32 71.98 0.45 1.19 16 4 C 0.06 0.75 6.32 71.98 0.45 1.21 16 5 O -0.40 -7.62 10.27 -144.34 -1.48 -9.10 16 6 C 0.08 1.32 5.39 71.98 0.39 1.71 16 7 C -0.09 -1.95 3.30 -9.40 -0.03 -1.98 16 8 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 9 C -0.11 -1.79 6.39 31.79 0.20 -1.59 16 10 C 0.09 2.01 6.49 86.74 0.56 2.58 16 11 N -0.63 -19.80 3.33 -811.77 -2.70 -22.50 16 12 C 0.53 22.16 7.46 87.66 0.65 22.82 16 13 O -0.58 -30.03 16.29 -3.04 -0.05 -30.08 16 14 C -0.06 -2.44 4.37 29.10 0.13 -2.31 16 15 C -0.19 -9.55 4.43 -19.40 -0.09 -9.63 16 16 C -0.09 -4.22 9.66 22.22 0.21 -4.00 16 17 C -0.24 -11.23 10.05 22.46 0.23 -11.01 16 18 C -0.12 -5.87 10.02 22.22 0.22 -5.65 16 19 C -0.19 -10.96 8.69 22.73 0.20 -10.77 16 20 C 0.09 5.39 5.56 -21.29 -0.12 5.27 16 21 C -0.48 -27.15 8.14 23.46 0.19 -26.96 16 22 H 0.07 3.65 6.67 -2.91 -0.02 3.63 16 23 C 0.04 1.96 5.16 85.26 0.44 2.40 16 24 N -0.82 -44.85 10.96 21.83 0.24 -44.61 16 25 Si 0.97 40.79 29.59 68.60 2.03 42.82 16 26 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 27 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 C 0.11 2.99 6.37 86.86 0.55 3.55 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 0.87 8.14 -2.38 -0.02 0.86 16 38 H 0.08 0.91 7.97 -2.39 -0.02 0.89 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.10 1.23 7.91 -2.39 -0.02 1.21 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 43 H 0.09 3.80 7.08 -2.39 -0.02 3.78 16 44 H 0.11 3.59 8.05 -2.39 -0.02 3.57 16 45 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 46 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 47 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 48 H 0.10 5.76 6.20 -2.91 -0.02 5.74 16 49 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 50 H 0.05 1.68 8.04 -2.39 -0.02 1.66 16 51 H 0.08 1.88 8.04 -2.39 -0.02 1.86 16 Total: -1.00 -76.67 417.69 3.30 -73.37 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.90 Total: 31.19 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 5.90 Total: -31.61 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -2.46 Total: -67.11 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -3.07 Total: -48.67 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -76.67 3.30 -73.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776973377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.028 kcal (2) G-P(sol) polarization free energy of solvation -76.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds