Wall clock time and date at job start Wed Apr 1 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99976 * 2 1 4 4 C 1.52997 * 109.47237 * 179.97438 * 3 2 1 5 5 O 1.42906 * 109.46745 * 65.00716 * 4 3 2 6 6 C 1.42899 * 113.99951 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47144 * 179.97438 * 6 5 4 8 8 H 1.08996 * 110.88580 * 51.11830 * 7 6 5 9 9 C 1.55161 * 111.00662 * 287.19522 * 7 6 5 10 10 C 1.54317 * 102.86390 * 206.22927 * 9 7 6 11 11 N 1.47020 * 107.27347 * 22.52613 * 10 9 7 12 12 C 1.34783 * 125.64618 * 180.96684 * 11 10 9 13 13 O 1.21277 * 120.00279 * 179.69074 * 12 11 10 14 14 C 1.50700 * 119.99853 * 359.69335 * 12 11 10 15 15 C 1.50698 * 109.47235 * 179.97438 * 14 12 11 16 16 C 1.37641 * 120.12690 * 265.02448 * 15 14 12 17 17 C 1.38617 * 120.24731 * 179.97438 * 16 15 14 18 18 C 1.38656 * 120.50160 * 0.02562 * 17 16 15 19 19 C 1.37602 * 120.24757 * 359.67094 * 18 17 16 20 20 C 1.40693 * 120.12621 * 84.99568 * 15 14 12 21 21 C 1.41394 * 120.24810 * 0.03184 * 20 15 14 22 22 H 1.08003 * 119.99337 * 334.24114 * 21 20 15 23 23 C 1.39942 * 120.00176 * 154.23890 * 21 20 15 24 24 N 1.30818 * 120.00421 * 334.73118 * 23 21 20 25 25 Si 1.86804 * 119.99615 * 154.72900 * 23 21 20 26 26 H 1.48496 * 109.47303 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47318 * 239.99885 * 25 23 21 28 28 H 1.48501 * 109.46928 * 120.00112 * 25 23 21 29 29 C 1.47427 * 108.70963 * 0.70186 * 11 10 9 30 30 H 1.08999 * 109.47478 * 299.99951 * 1 2 3 31 31 H 1.09003 * 109.47200 * 60.00165 * 1 2 3 32 32 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46994 * 59.99747 * 3 2 1 34 34 H 1.08998 * 109.47341 * 300.00672 * 3 2 1 35 35 H 1.08994 * 109.47452 * 305.00328 * 4 3 2 36 36 H 1.09006 * 109.47034 * 185.00112 * 4 3 2 37 37 H 1.09001 * 109.47075 * 59.99436 * 6 5 4 38 38 H 1.09004 * 109.46953 * 299.99948 * 6 5 4 39 39 H 1.08999 * 110.71664 * 324.78725 * 9 7 6 40 40 H 1.09000 * 110.71818 * 87.88366 * 9 7 6 41 41 H 1.08998 * 109.98191 * 263.05012 * 10 9 7 42 42 H 1.08995 * 109.77127 * 141.88814 * 10 9 7 43 43 H 1.09007 * 109.47295 * 59.99979 * 14 12 11 44 44 H 1.09002 * 109.47232 * 300.00080 * 14 12 11 45 45 H 1.07994 * 119.87863 * 359.97438 * 16 15 14 46 46 H 1.07999 * 119.74909 * 179.97438 * 17 16 15 47 47 H 1.07995 * 119.88052 * 179.97438 * 18 17 16 48 48 H 1.08001 * 120.13227 * 180.29618 * 19 18 17 49 49 H 0.97001 * 119.99516 * 354.23880 * 24 23 21 50 50 H 1.08999 * 110.36138 * 94.93140 * 29 11 10 51 51 H 1.08989 * 110.37104 * 217.26338 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9657 0.5794 -1.2203 6 6 5.3821 0.4199 -1.3222 7 6 5.7265 -0.2347 -2.6615 8 1 5.2493 0.2940 -3.4866 9 6 5.3370 -1.7367 -2.6629 10 6 6.3095 -2.3428 -3.6965 11 7 7.4626 -1.4361 -3.7951 12 6 8.5258 -1.6028 -4.6066 13 8 9.4210 -0.7846 -4.6090 14 6 8.6020 -2.8058 -5.5110 15 6 9.8798 -2.7546 -6.3084 16 6 9.8831 -2.2134 -7.5739 17 6 11.0571 -2.1646 -8.3094 18 6 12.2396 -2.6595 -7.7810 19 6 12.2610 -3.1993 -6.5155 20 6 11.0739 -3.2593 -5.7618 21 6 11.0826 -3.8176 -4.4628 22 1 10.3441 -3.5091 -3.7376 23 6 12.0480 -4.7698 -4.1168 24 7 12.6055 -5.5034 -5.0455 25 14 12.5406 -4.9933 -2.3288 26 1 11.7686 -4.0497 -1.4810 27 1 13.9925 -4.7211 -2.1776 28 1 12.2518 -6.3874 -1.9064 29 6 7.2604 -0.3110 -2.8641 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8465 -0.8899 35 1 3.8507 0.5686 0.8426 36 1 3.9784 2.1767 0.0902 37 1 5.7362 -0.2119 -0.5076 38 1 5.8631 1.3961 -1.2602 39 1 5.4924 -2.1762 -1.6777 40 1 4.3032 -1.8666 -2.9830 41 1 5.8186 -2.4251 -4.6662 42 1 6.6386 -3.3261 -3.3607 43 1 7.7498 -2.8041 -6.1906 44 1 8.5851 -3.7145 -4.9092 45 1 8.9677 -1.8254 -7.9955 46 1 11.0504 -1.7386 -9.3018 47 1 13.1484 -2.6168 -8.3630 48 1 13.1842 -3.5799 -6.1039 49 1 12.2915 -5.4471 -5.9615 50 1 7.7589 -0.5096 -1.9153 51 1 7.6317 0.6154 -3.3022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776973379.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:56 Heat of formation + Delta-G solvation = -137.410277 kcal Electronic energy + Delta-G solvation = -30105.210825 eV Core-core repulsion = 25968.112738 eV Total energy + Delta-G solvation = -4137.098088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.20605 -39.84417 -39.31481 -38.55669 -37.70310 -35.74334 -33.91843 -33.11241 -31.15388 -31.10082 -30.34649 -28.79261 -27.19987 -26.91897 -26.00282 -24.03261 -23.44897 -22.83899 -22.06991 -21.37822 -20.25467 -19.51915 -18.17288 -18.00771 -17.62790 -17.38938 -16.82453 -16.67695 -16.34793 -16.17485 -16.11265 -15.94753 -15.80572 -15.42405 -14.99627 -14.60822 -14.51608 -14.22333 -13.94321 -13.83651 -13.79912 -13.67291 -13.48857 -13.09110 -12.96934 -12.80981 -12.79071 -12.61529 -12.29789 -12.26993 -12.24971 -12.02806 -12.00438 -11.72623 -11.62752 -11.49384 -11.23064 -10.87506 -10.82241 -10.61990 -10.53128 -9.64711 -9.45575 -9.43553 -9.06652 -6.40324 0.89240 0.97848 1.45528 1.61778 1.72045 1.74538 2.01476 2.29861 2.64923 2.70520 2.89691 3.43487 3.60114 3.62127 3.88377 4.02817 4.11841 4.22359 4.24123 4.27435 4.29428 4.33751 4.36616 4.45477 4.48985 4.51712 4.53732 4.54733 4.58793 4.61493 4.63856 4.66115 4.73372 4.80764 4.87096 4.89387 4.92860 4.99224 5.06555 5.11140 5.26856 5.31755 5.41318 5.49453 5.78770 5.83684 5.97752 6.04359 6.18468 6.28858 6.31819 6.44290 6.51865 6.85993 7.00673 7.27248 8.07763 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.002163 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.543122 B =12940.184921 C =14063.272364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.059 3.941 4 C 0.057 3.943 5 O -0.396 6.396 6 C 0.077 3.923 7 C -0.087 4.087 8 H 0.091 0.909 9 C -0.109 4.109 10 C 0.093 3.907 11 N -0.627 5.627 12 C 0.531 3.469 13 O -0.578 6.578 14 C -0.060 4.060 15 C -0.192 4.192 16 C -0.081 4.081 17 C -0.249 4.249 18 C -0.096 4.096 19 C -0.242 4.242 20 C 0.085 3.915 21 C -0.539 4.539 22 H 0.064 0.936 23 C 0.004 3.996 24 N -0.819 5.819 25 Si 1.112 2.888 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.259 1.259 29 C 0.110 3.890 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.111 0.889 48 H 0.084 0.916 49 H 0.284 0.716 50 H 0.067 0.933 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.528 9.751 11.626 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.017 4.017 4 C -0.020 4.020 5 O -0.316 6.316 6 C 0.000 4.000 7 C -0.106 4.106 8 H 0.109 0.891 9 C -0.147 4.147 10 C -0.029 4.029 11 N -0.362 5.362 12 C 0.321 3.679 13 O -0.456 6.456 14 C -0.099 4.099 15 C -0.194 4.194 16 C -0.099 4.099 17 C -0.268 4.268 18 C -0.114 4.114 19 C -0.262 4.262 20 C 0.082 3.918 21 C -0.568 4.568 22 H 0.082 0.918 23 C -0.212 4.212 24 N -0.443 5.443 25 Si 0.930 3.070 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.184 1.184 29 C -0.013 4.013 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.127 0.873 44 H 0.110 0.890 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.129 0.871 48 H 0.102 0.898 49 H 0.096 0.904 50 H 0.085 0.915 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.961 9.067 12.373 26.788 hybrid contribution -0.502 1.139 -1.148 1.693 sum -22.463 10.206 11.225 27.107 Atomic orbital electron populations 1.22890 0.79746 1.03593 1.00780 1.87920 1.21225 1.28663 1.95591 1.22708 0.92047 0.85009 1.01928 1.22718 0.93795 0.98480 0.86958 1.87895 1.22077 1.82542 1.39104 1.22325 0.81569 1.00015 0.96053 1.22165 0.92828 0.97237 0.98388 0.89063 1.22621 0.99463 0.93467 0.99149 1.22313 0.85824 0.93591 1.01209 1.48592 1.20865 1.26084 1.40672 1.20839 0.79835 0.87393 0.79801 1.90651 1.39114 1.46817 1.69060 1.20193 0.96913 0.95761 0.97062 1.19524 0.93877 1.10434 0.95562 1.20798 0.97745 0.97286 0.94056 1.20719 0.93333 1.11425 1.01335 1.20905 0.97844 0.97673 0.94994 1.21131 0.97116 1.10545 0.97371 1.17794 0.91062 0.90253 0.92688 1.20529 1.15833 1.22683 0.97724 0.91824 1.28229 0.91782 0.91173 1.10023 1.70496 1.37174 1.31518 1.05089 0.83071 0.77450 0.77854 0.68607 1.19695 1.19480 1.18351 1.22127 0.96026 0.89969 0.93149 0.92750 0.93553 0.89118 0.89578 0.92415 0.92338 0.89784 0.92161 0.91924 0.89918 0.88244 0.89892 0.90896 0.87332 0.88992 0.86420 0.86185 0.87092 0.89815 0.90352 0.91503 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.11 10.67 -144.35 -1.54 -8.65 16 3 C 0.06 0.72 6.32 71.98 0.45 1.17 16 4 C 0.06 0.74 6.32 71.98 0.45 1.19 16 5 O -0.40 -7.25 10.27 -144.35 -1.48 -8.74 16 6 C 0.08 1.27 5.39 71.98 0.39 1.66 16 7 C -0.09 -1.69 3.29 -9.40 -0.03 -1.72 16 8 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 9 C -0.11 -1.97 6.39 31.78 0.20 -1.77 16 10 C 0.09 2.11 6.48 86.73 0.56 2.67 16 11 N -0.63 -19.88 3.33 -811.82 -2.70 -22.58 16 12 C 0.53 22.23 7.48 87.66 0.66 22.88 16 13 O -0.58 -29.98 16.29 -3.02 -0.05 -30.03 16 14 C -0.06 -2.44 4.37 29.10 0.13 -2.32 16 15 C -0.19 -9.56 4.43 -19.41 -0.09 -9.64 16 16 C -0.08 -3.70 9.66 22.22 0.21 -3.49 16 17 C -0.25 -11.37 10.05 22.46 0.23 -11.15 16 18 C -0.10 -4.71 10.02 22.22 0.22 -4.49 16 19 C -0.24 -13.47 7.95 22.73 0.18 -13.29 16 20 C 0.08 4.74 5.29 -21.29 -0.11 4.63 16 21 C -0.54 -30.09 8.08 23.46 0.19 -29.91 16 22 H 0.06 3.54 6.73 -2.91 -0.02 3.52 16 23 C 0.00 0.21 4.94 85.26 0.42 0.63 16 24 N -0.82 -45.63 12.33 21.82 0.27 -45.36 16 25 Si 1.11 45.92 30.00 68.60 2.06 47.98 16 26 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 27 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 28 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 29 C 0.11 2.93 6.38 86.86 0.55 3.49 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.06 0.92 7.97 -2.39 -0.02 0.90 16 38 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.08 1.42 7.91 -2.39 -0.02 1.40 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.11 3.59 8.05 -2.38 -0.02 3.57 16 44 H 0.09 3.79 7.06 -2.39 -0.02 3.77 16 45 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 46 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 47 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 48 H 0.08 4.87 6.53 -2.91 -0.02 4.86 16 49 H 0.28 16.45 6.70 -92.71 -0.62 15.83 16 50 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 51 H 0.06 1.87 8.04 -2.39 -0.02 1.86 16 Total: -1.00 -75.07 416.97 3.47 -71.60 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 1.05 Total: 33.71 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 5.87 Total: -37.94 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -2.43 Total: -67.94 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -3.07 Total: -47.41 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.06 Total: 47.98 kcal Total: -75.07 3.47 -71.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776973379.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.814 kcal (2) G-P(sol) polarization free energy of solvation -75.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds