Wall clock time and date at job start Wed Apr 1 2020 05:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47477 * 2 1 4 4 C 1.42899 * 113.99981 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47250 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.46884 * 65.00134 * 5 4 3 7 7 C 1.42902 * 113.99959 * 179.97438 * 6 5 4 8 8 H 1.08997 * 110.64594 * 328.31422 * 7 6 5 9 9 C 1.55160 * 110.71819 * 91.45600 * 7 6 5 10 10 C 1.54912 * 101.57978 * 154.04186 * 9 7 6 11 11 N 1.47422 * 104.83095 * 322.98903 * 10 9 7 12 12 C 1.34783 * 125.64435 * 204.08992 * 11 10 9 13 13 O 1.21281 * 119.99966 * 180.02562 * 12 11 10 14 14 C 1.50696 * 120.00104 * 0.03084 * 12 11 10 15 15 C 1.50707 * 109.46934 * 180.02562 * 14 12 11 16 16 C 1.37635 * 120.12337 * 265.01487 * 15 14 12 17 17 C 1.38616 * 120.24706 * 180.02562 * 16 15 14 18 18 C 1.38655 * 120.49937 * 0.02562 * 17 16 15 19 19 C 1.37599 * 120.24915 * 359.67511 * 18 17 16 20 20 C 1.40689 * 120.12925 * 85.00196 * 15 14 12 21 21 C 1.41399 * 120.24622 * 0.02562 * 20 15 14 22 22 H 1.07996 * 119.99772 * 334.89540 * 21 20 15 23 23 C 1.39941 * 119.99943 * 154.89356 * 21 20 15 24 24 N 1.30826 * 120.00078 * 344.78545 * 23 21 20 25 25 Si 1.86803 * 120.00128 * 164.78738 * 23 21 20 26 26 H 1.48492 * 109.47009 * 269.99970 * 25 23 21 27 27 H 1.48499 * 109.46789 * 30.00090 * 25 23 21 28 28 H 1.48497 * 109.47086 * 149.99560 * 25 23 21 29 29 C 1.47012 * 108.70666 * 24.35853 * 11 10 9 30 30 H 1.09003 * 109.47032 * 59.99320 * 1 2 3 31 31 H 1.08991 * 109.47724 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46706 * 299.99714 * 1 2 3 33 33 H 1.09004 * 109.46706 * 240.00286 * 2 1 3 34 34 H 1.08999 * 109.47406 * 120.00991 * 2 1 3 35 35 H 1.09005 * 109.47040 * 60.00465 * 4 3 2 36 36 H 1.09004 * 109.47357 * 300.00546 * 4 3 2 37 37 H 1.08999 * 109.47412 * 305.00338 * 5 4 3 38 38 H 1.09000 * 109.47519 * 184.99803 * 5 4 3 39 39 H 1.09003 * 111.00372 * 35.97142 * 9 7 6 40 40 H 1.08994 * 111.03958 * 272.13058 * 9 7 6 41 41 H 1.09000 * 110.36235 * 204.15336 * 10 9 7 42 42 H 1.09002 * 110.45947 * 81.88022 * 10 9 7 43 43 H 1.08993 * 109.47548 * 59.99710 * 14 12 11 44 44 H 1.09005 * 109.47072 * 299.99520 * 14 12 11 45 45 H 1.08007 * 119.88042 * 359.97438 * 16 15 14 46 46 H 1.07996 * 119.74752 * 179.97438 * 17 16 15 47 47 H 1.08004 * 119.87516 * 179.97438 * 18 17 16 48 48 H 1.07998 * 120.12658 * 180.29855 * 19 18 17 49 49 H 0.96998 * 119.99916 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.88472 * 118.12828 * 29 11 10 51 51 H 1.09000 * 109.88501 * 239.29432 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 0.0006 5 6 3.8256 2.9382 0.0012 6 8 3.3979 3.5448 1.2223 7 6 3.7197 4.9333 1.3254 8 1 4.6466 5.1533 0.7957 9 6 2.5576 5.8078 0.7846 10 6 2.7704 7.1270 1.5683 11 7 3.2147 6.7024 2.9083 12 6 3.0883 7.4205 4.0418 13 8 3.4920 6.9702 5.0931 14 6 2.4453 8.7828 4.0030 15 6 2.4278 9.3698 5.3910 16 6 1.3134 9.2290 6.1864 17 6 1.2943 9.7683 7.4632 18 6 2.3945 10.4549 7.9537 19 6 3.5216 10.6025 7.1783 20 6 3.5505 10.0633 5.8787 21 6 4.7008 10.2144 5.0704 22 1 4.9059 9.5025 4.2847 23 6 5.5734 11.2865 5.2886 24 7 5.1918 12.3022 6.0196 25 14 7.2831 11.2674 4.5362 26 1 8.2323 10.6255 5.4807 27 1 7.2556 10.5009 3.2646 28 1 7.7202 12.6604 4.2651 29 6 3.8242 5.3688 2.8024 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5140 0.8899 35 1 3.8341 0.9763 -0.8892 36 1 3.8334 0.9764 0.8908 37 1 3.3501 3.4416 -0.8406 38 1 4.9085 3.0253 -0.0879 39 1 1.5910 5.3636 1.0225 40 1 2.6570 5.9705 -0.2886 41 1 1.8350 7.6824 1.6370 42 1 3.5376 7.7352 1.0892 43 1 1.4239 8.6922 3.6335 44 1 3.0149 9.4347 3.3405 45 1 0.4502 8.6971 5.8141 46 1 0.4154 9.6534 8.0803 47 1 2.3685 10.8713 8.9499 48 1 4.3792 11.1335 7.5641 49 1 5.7965 13.0455 6.1705 50 1 4.8706 5.4143 3.1042 51 1 3.2844 4.6632 3.4340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776984661.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:16 Heat of formation + Delta-G solvation = -109.842160 kcal Electronic energy + Delta-G solvation = -30208.310111 eV Core-core repulsion = 26072.407467 eV Total energy + Delta-G solvation = -4135.902645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.87874 -38.75742 -38.02174 -37.19567 -35.97555 -33.57568 -32.26670 -31.72993 -30.65905 -29.57081 -29.38958 -28.45014 -26.50466 -24.95129 -23.20083 -23.12151 -22.88184 -21.28216 -20.86854 -19.96369 -18.65467 -17.57961 -17.18220 -17.11334 -16.61598 -16.27885 -15.50347 -15.43502 -15.23305 -14.92065 -14.71680 -14.34637 -14.02316 -13.81841 -13.63507 -13.48404 -13.35432 -12.97397 -12.72251 -12.55367 -12.39691 -12.17947 -12.11277 -11.70827 -11.69891 -11.64634 -11.52047 -11.50330 -11.28186 -11.13158 -10.99681 -10.93401 -10.80444 -10.61328 -10.34608 -9.95023 -9.74659 -9.43826 -9.30786 -9.14243 -9.11333 -8.29921 -7.25268 -7.23978 -6.67947 -4.29617 2.80374 2.94471 3.09129 3.11862 3.18976 3.31415 3.32030 3.37365 3.65792 3.96760 4.43454 4.48065 4.63675 4.69610 4.71435 4.81338 4.85492 4.91159 4.96970 5.00368 5.07518 5.15600 5.31612 5.39341 5.41539 5.45307 5.57356 5.59555 5.67593 5.79434 5.80055 5.85954 5.93399 5.98426 6.09276 6.15537 6.34640 6.48173 6.56667 6.64187 6.84240 6.85915 7.02013 7.13454 7.36294 7.48641 7.69452 7.91015 7.99903 8.13510 8.19202 8.37080 8.70419 8.87255 8.97068 9.07205 10.25351 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.002285 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.027565 B =12248.655493 C =13649.117362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.365 6.365 7 C 0.078 3.922 8 H 0.076 0.924 9 C -0.154 4.154 10 C 0.103 3.897 11 N -0.630 5.630 12 C 0.533 3.467 13 O -0.517 6.517 14 C -0.064 4.064 15 C -0.182 4.182 16 C -0.081 4.081 17 C -0.239 4.239 18 C -0.107 4.107 19 C -0.159 4.159 20 C 0.127 3.873 21 C -0.454 4.454 22 H 0.073 0.927 23 C 0.075 3.925 24 N -0.796 5.796 25 Si 0.905 3.095 26 H -0.268 1.268 27 H -0.264 1.264 28 H -0.278 1.278 29 C 0.114 3.886 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.119 0.881 49 H 0.279 0.721 50 H 0.071 0.929 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -17.114 -16.708 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.013 4.013 6 O -0.284 6.284 7 C 0.020 3.980 8 H 0.094 0.906 9 C -0.192 4.192 10 C -0.021 4.021 11 N -0.369 5.369 12 C 0.323 3.677 13 O -0.390 6.390 14 C -0.103 4.103 15 C -0.184 4.184 16 C -0.099 4.099 17 C -0.259 4.259 18 C -0.126 4.126 19 C -0.178 4.178 20 C 0.125 3.875 21 C -0.484 4.484 22 H 0.091 0.909 23 C -0.142 4.142 24 N -0.422 5.422 25 Si 0.730 3.270 26 H -0.193 1.193 27 H -0.188 1.188 28 H -0.204 1.204 29 C -0.010 4.010 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.137 0.863 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.782 -17.010 -15.803 23.384 hybrid contribution 1.149 -0.086 -0.614 1.306 sum -1.633 -17.095 -16.417 23.758 Atomic orbital electron populations 1.21738 0.93665 1.02164 1.03333 1.22458 0.95793 0.83869 0.99872 1.87978 1.20443 1.26190 1.95369 1.22513 0.82296 0.95605 1.00835 1.22553 0.98260 0.92505 0.87962 1.87991 1.80504 1.22156 1.37707 1.23078 0.97146 0.81448 0.96377 0.90573 1.23296 1.00362 0.95614 0.99970 1.22220 1.00501 0.96338 0.83004 1.48583 1.62293 1.18031 1.08029 1.21021 0.78561 0.86804 0.81347 1.90692 1.47908 1.70992 1.29407 1.20236 0.99687 0.91621 0.98791 1.19071 0.95535 1.09498 0.94302 1.20300 0.96374 0.98884 0.94366 1.20311 0.99035 1.09327 0.97187 1.20682 0.94662 0.99347 0.97900 1.21344 0.97845 1.04447 0.94196 1.17347 0.90619 0.88326 0.91201 1.19477 1.05209 1.08422 1.15281 0.90869 1.25884 0.99681 0.94456 0.94131 1.69818 1.35863 1.05350 1.31194 0.86371 0.82369 0.78050 0.80253 1.19350 1.18800 1.20352 1.21635 0.99047 0.85541 0.94736 0.91907 0.91181 0.91611 0.93645 0.93369 0.91917 0.92344 0.92303 0.91649 0.89474 0.90019 0.90073 0.91256 0.90661 0.88614 0.89763 0.89664 0.89593 0.86285 0.91025 0.91082 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.38 -3.89 10.31 -40.08 -0.41 -4.30 16 4 C 0.06 0.51 6.32 37.16 0.23 0.74 16 5 C 0.06 0.53 6.19 37.16 0.23 0.76 16 6 O -0.37 -4.27 10.05 -40.08 -0.40 -4.67 16 7 C 0.08 0.87 3.39 -24.89 -0.08 0.78 16 8 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 9 C -0.15 -1.55 6.81 -24.58 -0.17 -1.72 16 10 C 0.10 1.23 6.69 -2.53 -0.02 1.21 16 11 N -0.63 -10.34 3.33 -170.52 -0.57 -10.91 16 12 C 0.53 11.15 7.49 -10.98 -0.08 11.06 16 13 O -0.52 -13.15 16.36 5.56 0.09 -13.06 16 14 C -0.06 -1.31 4.19 -29.03 -0.12 -1.43 16 15 C -0.18 -4.53 4.43 -103.91 -0.46 -4.99 16 16 C -0.08 -1.93 9.66 -39.66 -0.38 -2.32 16 17 C -0.24 -5.74 10.05 -39.29 -0.39 -6.13 16 18 C -0.11 -2.69 10.02 -39.66 -0.40 -3.09 16 19 C -0.16 -4.35 8.69 -38.87 -0.34 -4.69 16 20 C 0.13 3.49 5.57 -106.83 -0.60 2.90 16 21 C -0.45 -12.18 8.17 -37.74 -0.31 -12.49 16 22 H 0.07 1.92 6.64 -52.49 -0.35 1.58 16 23 C 0.08 1.92 5.19 -17.34 -0.09 1.83 16 24 N -0.80 -20.82 10.86 55.55 0.60 -20.22 16 25 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 28 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 29 C 0.11 1.68 6.66 -3.06 -0.02 1.66 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.31 7.76 -51.93 -0.40 0.91 16 44 H 0.10 1.92 7.04 -51.93 -0.37 1.56 16 45 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16 46 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 48 H 0.12 3.33 6.12 -52.49 -0.32 3.01 16 49 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 50 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 51 H 0.08 1.23 8.06 -51.93 -0.42 0.81 16 LS Contribution 417.52 15.07 6.29 6.29 Total: -1.00 -33.27 417.52 -10.34 -43.61 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.55 Total: 5.01 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -2.37 Total: -15.87 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.04 Total: -31.13 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.73 Total: -22.04 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.27 -10.34 -43.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776984661.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.233 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds