Wall clock time and date at job start Wed Apr 1 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47477 * 2 1 4 4 C 1.42899 * 113.99981 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47250 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.46884 * 65.00134 * 5 4 3 7 7 C 1.42902 * 113.99959 * 179.97438 * 6 5 4 8 8 H 1.08997 * 110.64594 * 328.31422 * 7 6 5 9 9 C 1.55160 * 110.71819 * 91.45600 * 7 6 5 10 10 C 1.54912 * 101.57978 * 154.04186 * 9 7 6 11 11 N 1.47422 * 104.83095 * 322.98903 * 10 9 7 12 12 C 1.34783 * 125.64435 * 204.08992 * 11 10 9 13 13 O 1.21281 * 119.99966 * 180.02562 * 12 11 10 14 14 C 1.50696 * 120.00104 * 0.03084 * 12 11 10 15 15 C 1.50707 * 109.46934 * 180.02562 * 14 12 11 16 16 C 1.37635 * 120.12337 * 265.01487 * 15 14 12 17 17 C 1.38616 * 120.24706 * 180.02562 * 16 15 14 18 18 C 1.38655 * 120.49937 * 0.02562 * 17 16 15 19 19 C 1.37599 * 120.24915 * 359.67511 * 18 17 16 20 20 C 1.40689 * 120.12925 * 85.00196 * 15 14 12 21 21 C 1.41399 * 120.24622 * 0.02562 * 20 15 14 22 22 H 1.07996 * 119.99772 * 334.89540 * 21 20 15 23 23 C 1.39941 * 119.99943 * 154.89356 * 21 20 15 24 24 N 1.30826 * 120.00078 * 344.78545 * 23 21 20 25 25 Si 1.86803 * 120.00128 * 164.78738 * 23 21 20 26 26 H 1.48492 * 109.47009 * 269.99970 * 25 23 21 27 27 H 1.48499 * 109.46789 * 30.00090 * 25 23 21 28 28 H 1.48497 * 109.47086 * 149.99560 * 25 23 21 29 29 C 1.47012 * 108.70666 * 24.35853 * 11 10 9 30 30 H 1.09003 * 109.47032 * 59.99320 * 1 2 3 31 31 H 1.08991 * 109.47724 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46706 * 299.99714 * 1 2 3 33 33 H 1.09004 * 109.46706 * 240.00286 * 2 1 3 34 34 H 1.08999 * 109.47406 * 120.00991 * 2 1 3 35 35 H 1.09005 * 109.47040 * 60.00465 * 4 3 2 36 36 H 1.09004 * 109.47357 * 300.00546 * 4 3 2 37 37 H 1.08999 * 109.47412 * 305.00338 * 5 4 3 38 38 H 1.09000 * 109.47519 * 184.99803 * 5 4 3 39 39 H 1.09003 * 111.00372 * 35.97142 * 9 7 6 40 40 H 1.08994 * 111.03958 * 272.13058 * 9 7 6 41 41 H 1.09000 * 110.36235 * 204.15336 * 10 9 7 42 42 H 1.09002 * 110.45947 * 81.88022 * 10 9 7 43 43 H 1.08993 * 109.47548 * 59.99710 * 14 12 11 44 44 H 1.09005 * 109.47072 * 299.99520 * 14 12 11 45 45 H 1.08007 * 119.88042 * 359.97438 * 16 15 14 46 46 H 1.07996 * 119.74752 * 179.97438 * 17 16 15 47 47 H 1.08004 * 119.87516 * 179.97438 * 18 17 16 48 48 H 1.07998 * 120.12658 * 180.29855 * 19 18 17 49 49 H 0.96998 * 119.99916 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.88472 * 118.12828 * 29 11 10 51 51 H 1.09000 * 109.88501 * 239.29432 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 0.0006 5 6 3.8256 2.9382 0.0012 6 8 3.3979 3.5448 1.2223 7 6 3.7197 4.9333 1.3254 8 1 4.6466 5.1533 0.7957 9 6 2.5576 5.8078 0.7846 10 6 2.7704 7.1270 1.5683 11 7 3.2147 6.7024 2.9083 12 6 3.0883 7.4205 4.0418 13 8 3.4920 6.9702 5.0931 14 6 2.4453 8.7828 4.0030 15 6 2.4278 9.3698 5.3910 16 6 1.3134 9.2290 6.1864 17 6 1.2943 9.7683 7.4632 18 6 2.3945 10.4549 7.9537 19 6 3.5216 10.6025 7.1783 20 6 3.5505 10.0633 5.8787 21 6 4.7008 10.2144 5.0704 22 1 4.9059 9.5025 4.2847 23 6 5.5734 11.2865 5.2886 24 7 5.1918 12.3022 6.0196 25 14 7.2831 11.2674 4.5362 26 1 8.2323 10.6255 5.4807 27 1 7.2556 10.5009 3.2646 28 1 7.7202 12.6604 4.2651 29 6 3.8242 5.3688 2.8024 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5140 0.8899 35 1 3.8341 0.9763 -0.8892 36 1 3.8334 0.9764 0.8908 37 1 3.3501 3.4416 -0.8406 38 1 4.9085 3.0253 -0.0879 39 1 1.5910 5.3636 1.0225 40 1 2.6570 5.9705 -0.2886 41 1 1.8350 7.6824 1.6370 42 1 3.5376 7.7352 1.0892 43 1 1.4239 8.6922 3.6335 44 1 3.0149 9.4347 3.3405 45 1 0.4502 8.6971 5.8141 46 1 0.4154 9.6534 8.0803 47 1 2.3685 10.8713 8.9499 48 1 4.3792 11.1335 7.5641 49 1 5.7965 13.0455 6.1705 50 1 4.8706 5.4143 3.1042 51 1 3.2844 4.6632 3.4340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776984661.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:15 Heat of formation + Delta-G solvation = -129.548991 kcal Electronic energy + Delta-G solvation = -30209.164664 eV Core-core repulsion = 26072.407467 eV Total energy + Delta-G solvation = -4136.757197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.17781 -39.85073 -39.17342 -38.59667 -37.15346 -35.50658 -33.58158 -32.81191 -31.77914 -31.32697 -30.38757 -29.53228 -28.12055 -26.83277 -24.39221 -23.66739 -23.53637 -22.82296 -22.27896 -21.62250 -20.13116 -19.05244 -18.43455 -17.99518 -17.79157 -17.30918 -17.08921 -16.52774 -16.38562 -16.11204 -15.95252 -15.69537 -15.45753 -15.30412 -14.84281 -14.53471 -14.42941 -14.38333 -13.96296 -13.69121 -13.53700 -13.41579 -13.32741 -13.11225 -12.95848 -12.88711 -12.75609 -12.66990 -12.51366 -12.48941 -12.24952 -12.20928 -12.09507 -11.93776 -11.64096 -11.33328 -11.20606 -11.04769 -10.81479 -10.56652 -10.50184 -9.64887 -9.23253 -9.17385 -8.58448 -6.29916 0.97848 1.12348 1.35209 1.47591 1.53215 1.76494 1.95072 2.19767 2.71121 2.77013 2.78678 3.46081 3.58127 3.76445 3.98387 4.08717 4.11311 4.16104 4.23293 4.26003 4.32399 4.36044 4.37114 4.41373 4.49702 4.54712 4.57538 4.59312 4.63881 4.67839 4.70844 4.76782 4.82444 4.83412 4.90686 4.96247 5.04020 5.04530 5.16637 5.19498 5.26957 5.37536 5.39850 5.54900 5.76725 6.03556 6.16335 6.20636 6.21298 6.34213 6.41589 6.52690 6.73555 6.99053 7.10797 7.31157 8.37236 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.002285 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.027565 B =12248.655493 C =13649.117362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.410 6.410 4 C 0.059 3.941 5 C 0.058 3.942 6 O -0.391 6.391 7 C 0.089 3.911 8 H 0.102 0.898 9 C -0.141 4.141 10 C 0.093 3.907 11 N -0.626 5.626 12 C 0.530 3.470 13 O -0.577 6.577 14 C -0.058 4.058 15 C -0.191 4.191 16 C -0.092 4.092 17 C -0.243 4.243 18 C -0.117 4.117 19 C -0.193 4.193 20 C 0.094 3.906 21 C -0.479 4.479 22 H 0.069 0.931 23 C 0.034 3.966 24 N -0.826 5.826 25 Si 0.974 3.026 26 H -0.272 1.272 27 H -0.255 1.255 28 H -0.263 1.263 29 C 0.107 3.893 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.100 0.900 49 H 0.286 0.714 50 H 0.061 0.939 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -18.025 -19.818 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.330 6.330 4 C -0.017 4.017 5 C -0.018 4.018 6 O -0.310 6.310 7 C 0.030 3.970 8 H 0.120 0.880 9 C -0.179 4.179 10 C -0.029 4.029 11 N -0.362 5.362 12 C 0.321 3.679 13 O -0.456 6.456 14 C -0.098 4.098 15 C -0.193 4.193 16 C -0.110 4.110 17 C -0.262 4.262 18 C -0.135 4.135 19 C -0.213 4.213 20 C 0.092 3.908 21 C -0.509 4.509 22 H 0.087 0.913 23 C -0.181 4.181 24 N -0.452 5.452 25 Si 0.795 3.205 26 H -0.197 1.197 27 H -0.179 1.179 28 H -0.187 1.187 29 C -0.016 4.016 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.135 0.865 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.124 0.876 48 H 0.118 0.882 49 H 0.097 0.903 50 H 0.079 0.921 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.928 -17.931 -18.977 26.272 hybrid contribution 1.090 0.107 0.352 1.151 sum -1.838 -17.824 -18.625 25.844 Atomic orbital electron populations 1.21764 0.93459 1.03203 1.02427 1.22621 0.96079 0.83101 1.00776 1.87937 1.21754 1.27710 1.95579 1.22685 0.81465 0.95708 1.01853 1.22821 0.99747 0.92476 0.86789 1.87966 1.81012 1.22296 1.39721 1.22989 0.98834 0.81717 0.93435 0.87975 1.23260 0.99281 0.93777 1.01584 1.22608 1.01617 0.97893 0.80739 1.48524 1.60882 1.18158 1.08645 1.20980 0.78184 0.87062 0.81704 1.90659 1.50683 1.72339 1.31871 1.20206 1.01740 0.91274 0.96551 1.19555 0.94957 1.08407 0.96392 1.20729 0.97162 0.98700 0.94417 1.20721 0.99552 1.08246 0.97724 1.20960 0.94429 0.99435 0.98688 1.21360 0.98421 1.06312 0.95187 1.17757 0.92010 0.89456 0.91581 1.19607 1.06292 1.09128 1.15879 0.91251 1.26706 1.03228 0.93636 0.94493 1.69879 1.37335 1.05931 1.32060 0.85330 0.76988 0.78738 0.79449 1.19716 1.17855 1.18745 1.21739 0.97880 0.84371 0.97607 0.92051 0.89223 0.93201 0.91773 0.93351 0.89146 0.92986 0.91307 0.89384 0.90565 0.86476 0.88815 0.89456 0.87262 0.88353 0.86770 0.86656 0.87578 0.88161 0.90335 0.92069 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.69 6.66 71.98 0.48 1.17 16 3 O -0.41 -7.85 10.31 -144.34 -1.49 -9.33 16 4 C 0.06 0.82 6.32 71.98 0.45 1.28 16 5 C 0.06 0.81 6.19 71.98 0.45 1.25 16 6 O -0.39 -8.52 10.05 -144.34 -1.45 -9.97 16 7 C 0.09 1.77 3.39 31.79 0.11 1.88 16 8 H 0.10 1.53 7.88 -2.39 -0.02 1.51 16 9 C -0.14 -2.40 6.81 31.99 0.22 -2.18 16 10 C 0.09 1.98 6.69 86.86 0.58 2.56 16 11 N -0.63 -20.11 3.33 -811.78 -2.70 -22.81 16 12 C 0.53 22.36 7.49 87.65 0.66 23.02 16 13 O -0.58 -30.47 16.36 -3.03 -0.05 -30.52 16 14 C -0.06 -2.36 4.19 29.10 0.12 -2.24 16 15 C -0.19 -9.61 4.43 -19.41 -0.09 -9.69 16 16 C -0.09 -4.34 9.66 22.22 0.21 -4.12 16 17 C -0.24 -11.51 10.05 22.46 0.23 -11.29 16 18 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 19 C -0.19 -11.00 8.69 22.73 0.20 -10.81 16 20 C 0.09 5.33 5.57 -21.29 -0.12 5.21 16 21 C -0.48 -26.49 8.17 23.46 0.19 -26.30 16 22 H 0.07 3.75 6.64 -2.91 -0.02 3.73 16 23 C 0.03 1.75 5.19 85.26 0.44 2.19 16 24 N -0.83 -44.39 10.86 21.83 0.24 -44.15 16 25 Si 0.97 39.57 29.59 68.60 2.03 41.60 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 28 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 29 C 0.11 3.16 6.66 86.74 0.58 3.74 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.82 8.11 -2.39 -0.02 0.80 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.78 7.48 -2.39 -0.02 1.76 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.11 3.57 7.76 -2.39 -0.02 3.55 16 44 H 0.10 3.91 7.04 -2.38 -0.02 3.89 16 45 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 46 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 47 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 48 H 0.10 5.94 6.12 -2.91 -0.02 5.92 16 49 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 50 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 51 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 Total: -1.00 -76.48 417.52 3.15 -73.33 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.90 Total: 33.05 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 5.67 Total: -31.21 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -2.46 Total: -66.96 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -2.99 Total: -49.82 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -76.48 3.15 -73.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776984661.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.216 kcal (2) G-P(sol) polarization free energy of solvation -76.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds