Wall clock time and date at job start Wed Apr 1 2020 05:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.46939 * 2 1 4 4 C 1.34234 * 116.99649 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00339 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99665 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46597 * 60.00228 * 6 4 3 8 8 N 1.46499 * 109.46914 * 179.97438 * 6 4 3 9 9 C 1.34775 * 120.00184 * 205.00406 * 8 6 4 10 10 O 1.21282 * 119.99664 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00144 * 180.02562 * 9 8 6 12 12 C 1.50700 * 109.47142 * 180.02562 * 11 9 8 13 13 C 1.37639 * 120.12226 * 264.99598 * 12 11 9 14 14 C 1.38619 * 120.24239 * 179.74445 * 13 12 11 15 15 C 1.38649 * 120.50201 * 0.26191 * 14 13 12 16 16 C 1.37590 * 120.25257 * 0.02562 * 15 14 13 17 17 C 1.40696 * 120.13135 * 85.26575 * 12 11 9 18 18 C 1.41396 * 120.24305 * 0.02562 * 17 12 11 19 19 H 1.08003 * 120.00221 * 334.29995 * 18 17 12 20 20 C 1.39946 * 120.00304 * 154.30177 * 18 17 12 21 21 N 1.30823 * 119.99468 * 343.65178 * 20 18 17 22 22 Si 1.86796 * 120.00127 * 163.65186 * 20 18 17 23 23 H 1.48494 * 109.47087 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47037 * 120.00439 * 22 20 18 25 25 H 1.48499 * 109.46933 * 239.99769 * 22 20 18 26 26 C 1.52999 * 109.47195 * 300.00401 * 6 4 3 27 27 C 1.53001 * 109.46787 * 299.99589 * 26 6 4 28 28 C 1.52989 * 109.47216 * 60.00123 * 26 6 4 29 29 C 1.53006 * 109.46436 * 180.02562 * 26 6 4 30 30 H 1.08997 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99516 * 1 2 3 32 32 H 1.09002 * 109.47503 * 59.99605 * 1 2 3 33 33 H 1.09002 * 109.46959 * 240.00484 * 2 1 3 34 34 H 1.08995 * 109.47172 * 120.00143 * 2 1 3 35 35 H 0.97003 * 119.99779 * 25.00507 * 8 6 4 36 36 H 1.09000 * 109.46834 * 59.99516 * 11 9 8 37 37 H 1.09002 * 109.46843 * 299.99770 * 11 9 8 38 38 H 1.07999 * 119.87936 * 0.02750 * 13 12 11 39 39 H 1.07998 * 119.74393 * 180.23248 * 14 13 12 40 40 H 1.08000 * 119.87453 * 180.02562 * 15 14 13 41 41 H 1.07999 * 120.13414 * 180.02562 * 16 15 14 42 42 H 0.97003 * 119.99997 * 180.02562 * 21 20 18 43 43 H 1.08993 * 109.47174 * 60.00640 * 27 26 6 44 44 H 1.09000 * 109.46829 * 180.02562 * 27 26 6 45 45 H 1.08993 * 109.47411 * 300.00199 * 27 26 6 46 46 H 1.09000 * 109.47282 * 60.00018 * 28 26 6 47 47 H 1.09000 * 109.46880 * 179.97438 * 28 26 6 48 48 H 1.09005 * 109.47251 * 299.99224 * 28 26 6 49 49 H 1.08993 * 109.47629 * 59.99883 * 29 26 6 50 50 H 1.09000 * 109.46729 * 179.97438 * 29 26 6 51 51 H 1.09001 * 109.46842 * 299.99511 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9375 -0.0012 7 1 3.5850 3.4698 0.8888 8 7 5.3837 2.8608 -0.0010 9 6 6.1120 3.8821 0.4919 10 8 5.5562 4.8648 0.9349 11 6 7.6170 3.8034 0.4914 12 6 8.1860 5.0630 1.0921 13 6 8.5688 6.1047 0.2781 14 6 9.0876 7.2665 0.8282 15 6 9.2320 7.3913 2.2015 16 6 8.8615 6.3604 3.0341 17 6 8.3332 5.1764 2.4867 18 6 7.9492 4.1103 3.3325 19 1 7.1934 3.4097 3.0091 20 6 8.5483 3.9627 4.5885 21 7 9.6641 4.5901 4.8587 22 14 7.7550 2.8700 5.8792 23 1 6.5096 2.2776 5.3286 24 1 8.6956 1.7839 6.2543 25 1 7.4294 3.6796 7.0808 26 6 3.4486 3.6841 -1.2504 27 6 3.9198 2.9368 -2.4996 28 6 1.9208 3.7641 -1.2498 29 6 4.0340 5.0977 -1.2511 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 5.8282 2.0749 -0.3558 36 1 7.9748 3.6948 -0.5324 37 1 7.9360 2.9439 1.0810 38 1 8.4604 6.0184 -0.7930 39 1 9.3819 8.0803 0.1822 40 1 9.6370 8.3011 2.6194 41 1 8.9744 6.4599 4.1035 42 1 10.0796 4.4876 5.7292 43 1 3.5032 1.9296 -2.4992 44 1 3.5838 3.4689 -3.3896 45 1 5.0082 2.8798 -2.5000 46 1 1.5852 4.2965 -0.3598 47 1 1.5846 4.2964 -2.1395 48 1 1.5042 2.7569 -1.2495 49 1 5.1224 5.0403 -1.2518 50 1 3.6981 5.6295 -2.1413 51 1 3.6987 5.6302 -0.3611 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777004686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:05 Heat of formation + Delta-G solvation = -117.064601 kcal Electronic energy + Delta-G solvation = -32018.571784 eV Core-core repulsion = 27882.355951 eV Total energy + Delta-G solvation = -4136.215833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.17413 -39.42569 -37.68619 -36.82637 -36.62847 -33.58860 -33.28726 -32.01192 -31.62482 -29.43066 -28.29416 -27.35179 -27.19270 -26.14544 -24.87868 -23.49879 -21.53748 -20.91749 -20.72796 -19.47024 -19.05649 -17.73354 -17.26427 -17.07177 -16.90272 -16.00911 -15.52715 -15.40188 -15.12772 -14.48225 -14.39673 -14.04796 -13.77207 -13.66458 -13.45278 -13.29398 -13.11680 -13.04053 -12.77483 -12.55748 -12.26777 -12.13844 -12.03230 -11.80886 -11.71771 -11.57586 -11.54233 -11.30525 -11.12682 -11.00697 -10.95846 -10.93408 -10.74710 -10.64721 -10.57050 -10.39225 -10.35055 -9.45146 -9.34346 -9.19206 -9.12900 -8.78712 -7.28230 -7.26088 -6.70800 -4.30969 2.01757 2.27985 2.81449 3.01501 3.10019 3.15787 3.29302 3.30037 3.63503 3.96982 4.37437 4.58528 4.63710 4.68990 4.69874 4.80699 4.96729 4.98209 5.28863 5.33933 5.41744 5.47401 5.54395 5.63791 5.65468 5.71102 5.77613 5.83137 5.92504 6.00828 6.03484 6.07795 6.13679 6.17383 6.23845 6.31493 6.35221 6.46516 6.54136 6.59332 6.65781 6.83400 7.12337 7.32832 7.45484 7.54655 7.67069 7.86539 7.97018 8.10803 8.16571 8.34899 8.68353 8.81097 8.95194 9.04816 10.23438 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.003596 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.977692 B = 7785.569491 C = 9646.914863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.346 6.346 4 C 0.465 3.535 5 O -0.503 6.503 6 C 0.165 3.835 7 H 0.123 0.877 8 N -0.730 5.730 9 C 0.521 3.479 10 O -0.511 6.511 11 C -0.069 4.069 12 C -0.180 4.180 13 C -0.080 4.080 14 C -0.240 4.240 15 C -0.107 4.107 16 C -0.159 4.159 17 C 0.129 3.871 18 C -0.456 4.456 19 H 0.074 0.926 20 C 0.077 3.923 21 N -0.795 5.795 22 Si 0.901 3.099 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.272 1.272 26 C -0.071 4.071 27 C -0.143 4.143 28 C -0.151 4.151 29 C -0.131 4.131 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.405 0.595 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.279 0.721 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.049 0.951 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.524 -7.617 -10.817 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.263 6.263 4 C 0.307 3.693 5 O -0.390 6.390 6 C 0.058 3.942 7 H 0.141 0.859 8 N -0.387 5.387 9 C 0.309 3.691 10 O -0.384 6.384 11 C -0.109 4.109 12 C -0.182 4.182 13 C -0.098 4.098 14 C -0.259 4.259 15 C -0.125 4.125 16 C -0.178 4.178 17 C 0.127 3.873 18 C -0.486 4.486 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.420 5.420 22 Si 0.726 3.274 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.197 1.197 26 C -0.073 4.073 27 C -0.200 4.200 28 C -0.209 4.209 29 C -0.188 4.188 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.241 0.759 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.541 -7.187 -10.279 19.203 hybrid contribution -0.021 -1.126 0.570 1.262 sum -14.562 -8.312 -9.710 19.376 Atomic orbital electron populations 1.21805 0.92520 1.02936 1.03628 1.23070 0.95452 0.80545 1.02684 1.86621 1.23985 1.31930 1.83716 1.23806 0.80967 0.92522 0.71956 1.90660 1.60329 1.42822 1.45162 1.20470 0.83012 0.88866 1.01872 0.85925 1.46017 1.03785 1.22658 1.66207 1.21233 0.90484 0.81631 0.75724 1.90693 1.72771 1.31143 1.43759 1.20258 0.89061 1.00438 1.01127 1.19006 1.10788 0.94807 0.93580 1.20285 0.99185 0.93779 0.96563 1.20295 1.12590 0.98388 0.94635 1.20667 1.00538 0.97602 0.93707 1.21283 1.04533 0.92850 0.99174 1.17333 0.88092 0.91805 0.90072 1.19510 1.19369 1.10567 0.99105 0.90763 1.25865 0.93604 0.95506 0.99007 1.69830 1.13604 1.36075 1.22538 0.86370 0.80378 0.80047 0.80609 1.18570 1.20024 1.19716 1.20905 0.96529 0.96739 0.93119 1.21906 1.01837 0.99218 0.97065 1.22092 0.93370 1.03251 1.02137 1.21892 1.01671 0.93436 1.01812 0.90320 0.91343 0.91428 0.91224 0.91155 0.75938 0.90502 0.88429 0.89792 0.89726 0.89652 0.86601 0.91048 0.93448 0.92020 0.91981 0.92133 0.92354 0.90630 0.91910 0.93227 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.35 -3.84 7.14 -39.27 -0.28 -4.12 16 4 C 0.47 6.16 5.99 36.01 0.22 6.37 16 5 O -0.50 -7.63 15.59 -18.75 -0.29 -7.92 16 6 C 0.16 2.28 2.07 -69.08 -0.14 2.14 16 7 H 0.12 1.88 7.58 -51.93 -0.39 1.48 16 8 N -0.73 -11.06 4.08 -54.93 -0.22 -11.28 16 9 C 0.52 9.76 5.84 -10.99 -0.06 9.69 16 10 O -0.51 -11.22 13.15 5.56 0.07 -11.15 16 11 C -0.07 -1.34 5.18 -29.03 -0.15 -1.49 16 12 C -0.18 -4.27 4.43 -103.91 -0.46 -4.73 16 13 C -0.08 -1.82 9.66 -39.66 -0.38 -2.20 16 14 C -0.24 -5.55 10.05 -39.29 -0.39 -5.94 16 15 C -0.11 -2.60 10.02 -39.67 -0.40 -3.00 16 16 C -0.16 -4.25 8.68 -38.88 -0.34 -4.59 16 17 C 0.13 3.44 5.56 -106.83 -0.59 2.85 16 18 C -0.46 -12.04 8.15 -37.74 -0.31 -12.35 16 19 H 0.07 1.93 6.68 -52.48 -0.35 1.58 16 20 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 21 N -0.79 -20.66 10.97 55.55 0.61 -20.05 16 22 Si 0.90 19.22 29.59 -169.99 -5.03 14.19 16 23 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 C -0.07 -0.85 0.62 -154.51 -0.10 -0.94 16 27 C -0.14 -1.52 8.07 37.16 0.30 -1.22 16 28 C -0.15 -1.52 7.95 37.15 0.30 -1.23 16 29 C -0.13 -1.80 7.00 37.16 0.26 -1.54 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 35 H 0.40 5.58 7.79 -40.82 -0.32 5.27 16 36 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 37 H 0.10 1.92 7.04 -51.93 -0.37 1.55 16 38 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.12 3.19 6.22 -52.49 -0.33 2.86 16 42 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 43 H 0.05 0.49 7.22 -51.93 -0.37 0.12 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.69 7.61 -51.93 -0.39 0.30 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.73 5.32 -51.93 -0.28 0.46 16 49 H 0.06 0.99 5.78 -51.93 -0.30 0.69 16 50 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 1.06 7.53 -51.93 -0.39 0.67 16 LS Contribution 405.30 15.07 6.11 6.11 Total: -1.00 -30.32 405.30 -8.89 -39.21 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.12 Total: 11.13 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.73 Total: -16.11 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.39 Total: -31.34 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.50 Total: -23.19 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.32 -8.89 -39.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777004686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.856 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds