Wall clock time and date at job start Wed Apr 1 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99717 * 2 1 4 4 C 1.52994 * 109.46910 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47272 * 65.00128 * 4 3 2 6 6 C 1.42898 * 114.00019 * 179.97438 * 5 4 3 7 7 C 1.53043 * 109.46152 * 149.99802 * 6 5 4 8 8 C 1.53191 * 109.31495 * 181.38474 * 7 6 5 9 9 N 1.46928 * 108.77595 * 305.36702 * 8 7 6 10 10 C 1.34769 * 120.62734 * 233.58322 * 9 8 7 11 11 O 1.21280 * 120.00494 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99712 * 179.97438 * 10 9 8 13 13 C 1.50701 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37637 * 120.12821 * 264.99945 * 13 12 10 15 15 C 1.38617 * 120.24621 * 180.02562 * 14 13 12 16 16 C 1.38655 * 120.50454 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24879 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12599 * 85.25660 * 13 12 10 19 19 C 1.41391 * 120.24763 * 0.02562 * 18 13 12 20 20 H 1.08002 * 119.99657 * 334.26850 * 19 18 13 21 21 C 1.39944 * 120.00260 * 154.27292 * 19 18 13 22 22 N 1.30818 * 119.99816 * 343.66632 * 21 19 18 23 23 Si 1.86800 * 119.99967 * 163.67180 * 21 19 18 24 24 H 1.48500 * 109.47114 * 89.99804 * 23 21 19 25 25 H 1.48501 * 109.46960 * 209.99569 * 23 21 19 26 26 H 1.48498 * 109.47256 * 329.99404 * 23 21 19 27 27 C 1.46919 * 118.73954 * 53.85986 * 9 8 7 28 28 C 1.53043 * 109.46385 * 270.06748 * 6 5 4 29 29 H 1.08997 * 109.47371 * 60.00143 * 1 2 3 30 30 H 1.08999 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47423 * 299.99605 * 1 2 3 32 32 H 1.09001 * 109.47192 * 59.99750 * 3 2 1 33 33 H 1.09005 * 109.47259 * 300.00027 * 3 2 1 34 34 H 1.08999 * 109.47391 * 304.99610 * 4 3 2 35 35 H 1.09006 * 109.47115 * 185.00099 * 4 3 2 36 36 H 1.09002 * 109.46212 * 30.02963 * 6 5 4 37 37 H 1.08996 * 109.49689 * 61.43553 * 7 6 5 38 38 H 1.09001 * 109.52201 * 301.35433 * 7 6 5 39 39 H 1.08996 * 109.58647 * 185.57557 * 8 7 6 40 40 H 1.09002 * 109.70239 * 65.22474 * 8 7 6 41 41 H 1.09001 * 109.47346 * 60.00337 * 12 10 9 42 42 H 1.08998 * 109.47329 * 299.99883 * 12 10 9 43 43 H 1.07996 * 119.88165 * 359.97438 * 14 13 12 44 44 H 1.08007 * 119.74706 * 180.02562 * 15 14 13 45 45 H 1.08003 * 119.87889 * 180.02562 * 16 15 14 46 46 H 1.07995 * 120.12844 * 179.97438 * 17 16 15 47 47 H 0.97001 * 119.99886 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.58944 * 65.92416 * 27 9 8 49 49 H 1.08995 * 109.59163 * 186.35375 * 27 9 8 50 50 H 1.09000 * 109.49395 * 298.56743 * 28 6 5 51 51 H 1.09000 * 109.49700 * 58.62679 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3811 0.4203 -1.3251 7 6 5.6949 -0.8055 -2.1859 8 6 7.2131 -0.9934 -2.2657 9 7 7.8194 0.2546 -2.7490 10 6 8.6434 0.2496 -3.8155 11 8 8.8905 -0.7917 -4.3861 12 6 9.2570 1.5381 -4.2996 13 6 10.1302 1.2602 -5.4960 14 6 11.4823 1.0612 -5.3332 15 6 12.2878 0.8060 -6.4320 16 6 11.7432 0.7486 -7.7058 17 6 10.3940 0.9445 -7.8923 18 6 9.5671 1.2086 -6.7844 19 6 8.1804 1.4173 -6.9646 20 1 7.4934 1.2072 -6.1581 21 6 7.6979 1.8962 -8.1878 22 7 8.5187 2.4487 -9.0436 23 14 5.8818 1.7465 -8.5986 24 1 5.1657 2.9582 -8.1250 25 1 5.7159 1.6165 -10.0686 26 1 5.3201 0.5460 -7.9290 27 6 7.5151 1.5071 -2.0440 28 6 5.9891 1.6679 -1.9701 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1766 0.0889 36 1 5.8045 0.2832 -0.3300 37 1 5.2934 -0.6584 -3.1885 38 1 5.2418 -1.6903 -1.7387 39 1 7.4452 -1.8040 -2.9565 40 1 7.6063 -1.2319 -1.2774 41 1 9.8595 1.9753 -3.5034 42 1 8.4665 2.2338 -4.5809 43 1 11.9175 1.1049 -4.3458 44 1 13.3478 0.6507 -6.2949 45 1 12.3801 0.5487 -8.5548 46 1 9.9719 0.8998 -8.8853 47 1 8.1843 2.7809 -9.8913 48 1 7.9305 1.4699 -1.0369 49 1 7.9464 2.3471 -2.5885 50 1 5.5848 1.7917 -2.9748 51 1 5.7449 2.5439 -1.3692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777404473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:02 Heat of formation + Delta-G solvation = -112.864995 kcal Electronic energy + Delta-G solvation = -30893.727925 eV Core-core repulsion = 26757.694200 eV Total energy + Delta-G solvation = -4136.033725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.98555 -38.78727 -37.91388 -37.25339 -35.93246 -33.57497 -32.45900 -31.61998 -30.85281 -30.02425 -29.39591 -26.93826 -26.54956 -25.09476 -24.31623 -23.35273 -22.65404 -21.09164 -20.87625 -19.79410 -18.51883 -17.40720 -17.11025 -16.94454 -16.52382 -15.75098 -15.66309 -15.52261 -15.36239 -15.05882 -14.86338 -14.45019 -14.19288 -13.82748 -13.61129 -13.50221 -13.28268 -12.96509 -12.68112 -12.51674 -12.46440 -12.21896 -12.14157 -11.69271 -11.65719 -11.52873 -11.31665 -11.26614 -11.10607 -11.04130 -10.97546 -10.90036 -10.65524 -10.56398 -10.35264 -10.00940 -9.63529 -9.43547 -9.31220 -9.11511 -9.07316 -8.36197 -7.26508 -7.23971 -6.69299 -4.29280 2.82560 2.99678 3.10259 3.16607 3.26964 3.31482 3.38230 3.45004 3.53050 3.98223 4.59338 4.66805 4.70142 4.75353 4.84034 4.92614 4.96971 5.02125 5.04341 5.10523 5.16368 5.25853 5.30960 5.34887 5.38242 5.49396 5.55040 5.62224 5.74291 5.80341 5.84728 5.97609 6.07165 6.09981 6.19128 6.25286 6.32496 6.46350 6.55489 6.80440 6.80847 6.87670 7.10022 7.13436 7.34428 7.47139 7.67800 7.81992 7.98034 8.12264 8.17961 8.36464 8.69671 8.86064 8.96758 9.06547 10.24871 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.002802 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.931147 B = 9992.086970 C =11657.323862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.372 6.372 6 C 0.094 3.906 7 C -0.130 4.130 8 C 0.116 3.884 9 N -0.628 5.628 10 C 0.519 3.481 11 O -0.519 6.519 12 C -0.069 4.069 13 C -0.182 4.182 14 C -0.081 4.081 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.073 0.927 21 C 0.078 3.922 22 N -0.796 5.796 23 Si 0.900 3.100 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.261 1.261 27 C 0.114 3.886 28 C -0.159 4.159 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.279 0.721 48 H 0.064 0.936 49 H 0.094 0.906 50 H 0.080 0.920 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.609 1.206 18.321 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.292 6.292 6 C 0.036 3.964 7 C -0.168 4.168 8 C -0.007 4.007 9 N -0.365 5.365 10 C 0.309 3.691 11 O -0.392 6.392 12 C -0.108 4.108 13 C -0.184 4.184 14 C -0.099 4.099 15 C -0.259 4.259 16 C -0.125 4.125 17 C -0.179 4.179 18 C 0.127 3.873 19 C -0.484 4.484 20 H 0.091 0.909 21 C -0.140 4.140 22 N -0.421 5.421 23 Si 0.725 3.275 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.010 4.010 28 C -0.197 4.197 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.112 0.888 50 H 0.099 0.901 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.471 0.526 17.598 21.013 hybrid contribution -0.990 0.450 0.011 1.088 sum -12.461 0.976 17.610 21.595 Atomic orbital electron populations 1.22745 0.81136 1.02857 0.99832 1.87969 1.19532 1.27337 1.95360 1.22574 0.92572 0.85486 1.00810 1.22526 0.93193 0.97677 0.87977 1.88018 1.22049 1.81578 1.37515 1.22080 0.80826 0.95121 0.98370 1.21986 0.96232 0.97228 1.01378 1.21433 0.90978 0.88427 0.99841 1.48283 1.48784 1.07686 1.31752 1.21260 0.77550 0.92325 0.77996 1.90669 1.59727 1.33950 1.54889 1.20288 0.99361 0.94292 0.96898 1.19068 0.92339 1.13695 0.93283 1.20288 0.93477 0.99967 0.96205 1.20299 0.97349 1.15013 0.93279 1.20670 0.95524 1.01000 0.95347 1.21291 0.92451 1.04607 0.99512 1.17335 0.93008 0.87001 0.90002 1.19451 0.92615 1.38400 0.97975 0.90853 1.25864 0.99820 0.92600 0.95680 1.69819 1.36879 1.27350 1.08085 0.86440 0.82931 0.79810 0.78368 1.19547 1.20085 1.18476 1.21700 0.94516 0.87519 0.97278 1.22543 0.95922 0.98130 1.03124 0.93978 0.89593 0.94269 0.91987 0.92321 0.92569 0.91825 0.92219 0.90436 0.90336 0.88492 0.92139 0.90735 0.88610 0.89822 0.89704 0.89620 0.86557 0.91012 0.91792 0.88814 0.90106 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.09 10.67 -40.09 -0.43 -4.52 16 3 C 0.06 0.53 6.32 37.15 0.23 0.76 16 4 C 0.06 0.56 6.13 37.15 0.23 0.79 16 5 O -0.37 -4.53 9.95 -40.09 -0.40 -4.93 16 6 C 0.09 1.04 2.57 -26.69 -0.07 0.97 16 7 C -0.13 -1.64 5.73 -26.61 -0.15 -1.79 16 8 C 0.12 1.59 6.43 -3.71 -0.02 1.57 16 9 N -0.63 -9.66 2.97 -172.51 -0.51 -10.17 16 10 C 0.52 10.38 7.35 -10.99 -0.08 10.30 16 11 O -0.52 -12.67 15.45 5.56 0.09 -12.59 16 12 C -0.07 -1.37 3.53 -29.03 -0.10 -1.47 16 13 C -0.18 -4.45 4.43 -103.91 -0.46 -4.91 16 14 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 15 C -0.24 -5.68 10.05 -39.29 -0.39 -6.08 16 16 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 17 C -0.16 -4.33 8.68 -38.87 -0.34 -4.66 16 18 C 0.13 3.50 5.56 -106.82 -0.59 2.90 16 19 C -0.45 -12.14 8.15 -37.74 -0.31 -12.45 16 20 H 0.07 1.92 6.68 -52.49 -0.35 1.57 16 21 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 22 N -0.80 -20.79 10.96 55.55 0.61 -20.18 16 23 Si 0.90 19.29 29.59 -169.99 -5.03 14.26 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 27 C 0.11 1.31 6.37 -3.49 -0.02 1.29 16 28 C -0.16 -1.74 5.71 -26.39 -0.15 -1.89 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.06 0.44 7.84 -51.93 -0.41 0.03 16 36 H 0.06 0.57 7.79 -51.93 -0.40 0.16 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.54 7.00 -51.93 -0.36 1.18 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.24 7.84 -51.93 -0.41 0.83 16 42 H 0.10 1.88 6.60 -51.93 -0.34 1.54 16 43 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16 45 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 46 H 0.12 3.24 6.21 -52.49 -0.33 2.92 16 47 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.09 1.06 5.93 -51.93 -0.31 0.76 16 50 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 51 H 0.07 0.63 7.84 -51.93 -0.41 0.23 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -32.96 409.48 -9.86 -42.83 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.37 Total: 5.91 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -1.99 Total: -16.77 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 0.10 Total: -30.35 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.74 Total: -22.04 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.96 -9.86 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777404473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.040 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds