Wall clock time and date at job start Wed Apr 1 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99717 * 2 1 4 4 C 1.52994 * 109.46910 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47272 * 65.00128 * 4 3 2 6 6 C 1.42898 * 114.00019 * 179.97438 * 5 4 3 7 7 C 1.53043 * 109.46152 * 149.99802 * 6 5 4 8 8 C 1.53191 * 109.31495 * 181.38474 * 7 6 5 9 9 N 1.46928 * 108.77595 * 305.36702 * 8 7 6 10 10 C 1.34769 * 120.62734 * 233.58322 * 9 8 7 11 11 O 1.21280 * 120.00494 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99712 * 179.97438 * 10 9 8 13 13 C 1.50701 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.37637 * 120.12821 * 264.99945 * 13 12 10 15 15 C 1.38617 * 120.24621 * 180.02562 * 14 13 12 16 16 C 1.38655 * 120.50454 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24879 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12599 * 85.25660 * 13 12 10 19 19 C 1.41391 * 120.24763 * 0.02562 * 18 13 12 20 20 H 1.08002 * 119.99657 * 334.26850 * 19 18 13 21 21 C 1.39944 * 120.00260 * 154.27292 * 19 18 13 22 22 N 1.30818 * 119.99816 * 343.66632 * 21 19 18 23 23 Si 1.86800 * 119.99967 * 163.67180 * 21 19 18 24 24 H 1.48500 * 109.47114 * 89.99804 * 23 21 19 25 25 H 1.48501 * 109.46960 * 209.99569 * 23 21 19 26 26 H 1.48498 * 109.47256 * 329.99404 * 23 21 19 27 27 C 1.46919 * 118.73954 * 53.85986 * 9 8 7 28 28 C 1.53043 * 109.46385 * 270.06748 * 6 5 4 29 29 H 1.08997 * 109.47371 * 60.00143 * 1 2 3 30 30 H 1.08999 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47423 * 299.99605 * 1 2 3 32 32 H 1.09001 * 109.47192 * 59.99750 * 3 2 1 33 33 H 1.09005 * 109.47259 * 300.00027 * 3 2 1 34 34 H 1.08999 * 109.47391 * 304.99610 * 4 3 2 35 35 H 1.09006 * 109.47115 * 185.00099 * 4 3 2 36 36 H 1.09002 * 109.46212 * 30.02963 * 6 5 4 37 37 H 1.08996 * 109.49689 * 61.43553 * 7 6 5 38 38 H 1.09001 * 109.52201 * 301.35433 * 7 6 5 39 39 H 1.08996 * 109.58647 * 185.57557 * 8 7 6 40 40 H 1.09002 * 109.70239 * 65.22474 * 8 7 6 41 41 H 1.09001 * 109.47346 * 60.00337 * 12 10 9 42 42 H 1.08998 * 109.47329 * 299.99883 * 12 10 9 43 43 H 1.07996 * 119.88165 * 359.97438 * 14 13 12 44 44 H 1.08007 * 119.74706 * 180.02562 * 15 14 13 45 45 H 1.08003 * 119.87889 * 180.02562 * 16 15 14 46 46 H 1.07995 * 120.12844 * 179.97438 * 17 16 15 47 47 H 0.97001 * 119.99886 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.58944 * 65.92416 * 27 9 8 49 49 H 1.08995 * 109.59163 * 186.35375 * 27 9 8 50 50 H 1.09000 * 109.49395 * 298.56743 * 28 6 5 51 51 H 1.09000 * 109.49700 * 58.62679 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3811 0.4203 -1.3251 7 6 5.6949 -0.8055 -2.1859 8 6 7.2131 -0.9934 -2.2657 9 7 7.8194 0.2546 -2.7490 10 6 8.6434 0.2496 -3.8155 11 8 8.8905 -0.7917 -4.3861 12 6 9.2570 1.5381 -4.2996 13 6 10.1302 1.2602 -5.4960 14 6 11.4823 1.0612 -5.3332 15 6 12.2878 0.8060 -6.4320 16 6 11.7432 0.7486 -7.7058 17 6 10.3940 0.9445 -7.8923 18 6 9.5671 1.2086 -6.7844 19 6 8.1804 1.4173 -6.9646 20 1 7.4934 1.2072 -6.1581 21 6 7.6979 1.8962 -8.1878 22 7 8.5187 2.4487 -9.0436 23 14 5.8818 1.7465 -8.5986 24 1 5.1657 2.9582 -8.1250 25 1 5.7159 1.6165 -10.0686 26 1 5.3201 0.5460 -7.9290 27 6 7.5151 1.5071 -2.0440 28 6 5.9891 1.6679 -1.9701 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1766 0.0889 36 1 5.8045 0.2832 -0.3300 37 1 5.2934 -0.6584 -3.1885 38 1 5.2418 -1.6903 -1.7387 39 1 7.4452 -1.8040 -2.9565 40 1 7.6063 -1.2319 -1.2774 41 1 9.8595 1.9753 -3.5034 42 1 8.4665 2.2338 -4.5809 43 1 11.9175 1.1049 -4.3458 44 1 13.3478 0.6507 -6.2949 45 1 12.3801 0.5487 -8.5548 46 1 9.9719 0.8998 -8.8853 47 1 8.1843 2.7809 -9.8913 48 1 7.9305 1.4699 -1.0369 49 1 7.9464 2.3471 -2.5885 50 1 5.5848 1.7917 -2.9748 51 1 5.7449 2.5439 -1.3692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777404473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:00 Heat of formation + Delta-G solvation = -132.561614 kcal Electronic energy + Delta-G solvation = -30894.582034 eV Core-core repulsion = 26757.694200 eV Total energy + Delta-G solvation = -4136.887834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.26408 -39.85596 -39.15919 -38.52164 -37.11511 -35.50643 -33.85185 -32.89482 -32.01168 -31.33470 -30.78766 -28.58116 -27.18756 -26.92589 -25.46800 -24.33777 -23.37618 -22.82153 -22.34752 -21.32328 -19.86945 -19.03956 -18.35504 -17.81766 -17.48936 -17.33389 -16.80558 -16.49927 -16.34921 -16.29866 -16.13448 -15.81235 -15.45178 -15.31870 -15.00366 -14.69624 -14.44356 -14.37260 -14.11420 -13.76461 -13.60001 -13.37769 -13.26994 -13.06235 -12.94792 -12.88788 -12.76423 -12.66563 -12.49909 -12.34922 -12.23204 -12.16717 -12.13806 -11.79537 -11.48824 -11.32061 -11.19688 -11.03203 -10.71208 -10.63447 -10.39599 -9.61462 -9.22265 -9.15041 -8.60751 -6.29496 0.99013 1.13502 1.32715 1.43687 1.51280 1.80424 2.15008 2.17945 2.66763 2.77546 2.88393 3.61854 3.75614 3.82103 3.99508 4.06350 4.14813 4.18029 4.23168 4.30622 4.34860 4.37278 4.41757 4.45545 4.51555 4.55408 4.58337 4.61552 4.65817 4.70898 4.73439 4.78899 4.82206 4.83190 4.85557 4.87610 4.98834 5.09489 5.12346 5.19338 5.29968 5.37186 5.55273 5.67259 5.77645 6.04078 6.16783 6.20428 6.22092 6.37143 6.42322 6.48459 6.74145 6.99176 7.11446 7.38228 8.35756 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.002802 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.931147 B = 9992.086970 C =11657.323862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.057 3.943 4 C 0.056 3.944 5 O -0.400 6.400 6 C 0.097 3.903 7 C -0.125 4.125 8 C 0.116 3.884 9 N -0.620 5.620 10 C 0.517 3.483 11 O -0.577 6.577 12 C -0.065 4.065 13 C -0.189 4.189 14 C -0.091 4.091 15 C -0.242 4.242 16 C -0.117 4.117 17 C -0.194 4.194 18 C 0.095 3.905 19 C -0.480 4.480 20 H 0.066 0.934 21 C 0.039 3.961 22 N -0.825 5.825 23 Si 0.965 3.035 24 H -0.254 1.254 25 H -0.265 1.265 26 H -0.273 1.273 27 C 0.106 3.894 28 C -0.153 4.153 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.286 0.714 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.049 0.951 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 2.443 21.606 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.019 4.019 4 C -0.020 4.020 5 O -0.320 6.320 6 C 0.040 3.960 7 C -0.164 4.164 8 C -0.006 4.006 9 N -0.355 5.355 10 C 0.307 3.693 11 O -0.456 6.456 12 C -0.104 4.104 13 C -0.190 4.190 14 C -0.109 4.109 15 C -0.261 4.261 16 C -0.135 4.135 17 C -0.214 4.214 18 C 0.093 3.907 19 C -0.510 4.510 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.451 5.451 23 Si 0.787 3.213 24 H -0.178 1.178 25 H -0.189 1.189 26 H -0.198 1.198 27 C -0.016 4.016 28 C -0.192 4.192 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.123 0.877 46 H 0.114 0.886 47 H 0.097 0.903 48 H 0.121 0.879 49 H 0.114 0.886 50 H 0.068 0.932 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.939 1.804 20.930 24.163 hybrid contribution -0.823 0.054 -0.900 1.221 sum -12.762 1.858 20.030 23.823 Atomic orbital electron populations 1.22889 0.79812 1.03556 1.00766 1.87917 1.21207 1.28817 1.95586 1.22747 0.92469 0.84907 1.01796 1.22789 0.93509 0.98849 0.86830 1.87995 1.22379 1.82185 1.39402 1.22040 0.80920 0.93914 0.99129 1.21906 0.95222 0.99102 1.00134 1.21525 0.91716 0.86883 1.00503 1.48302 1.46958 1.09809 1.30402 1.21201 0.78092 0.91353 0.78651 1.90645 1.62254 1.35593 1.57086 1.20277 0.99259 0.94466 0.96403 1.19578 0.93661 1.11906 0.93898 1.20735 0.93221 0.99074 0.97844 1.20729 0.99061 1.13531 0.92744 1.20947 0.94937 1.00673 0.96978 1.21298 0.93865 1.07221 0.98969 1.17731 0.93569 0.88011 0.91403 1.19544 0.92757 1.39912 0.98800 0.91610 1.26588 1.03906 0.91873 0.95193 1.69870 1.38705 1.27931 1.08603 0.85458 0.77789 0.79626 0.78424 1.17832 1.18940 1.19777 1.22062 0.95196 0.85590 0.98706 1.22499 0.95180 0.99501 1.01998 0.93922 0.89148 0.92403 0.89214 0.93019 0.91826 0.89387 0.89383 0.93866 0.89245 0.91544 0.88702 0.86867 0.88836 0.86413 0.86575 0.87667 0.88600 0.90340 0.87900 0.88550 0.93238 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -8.34 10.67 -144.34 -1.54 -9.88 16 3 C 0.06 0.84 6.32 71.98 0.45 1.30 16 4 C 0.06 0.83 6.13 71.98 0.44 1.28 16 5 O -0.40 -9.01 9.95 -144.34 -1.44 -10.44 16 6 C 0.10 1.92 2.57 30.62 0.08 2.00 16 7 C -0.13 -3.09 5.73 30.67 0.18 -2.91 16 8 C 0.12 3.09 6.43 86.36 0.56 3.64 16 9 N -0.62 -18.31 2.97 -818.09 -2.43 -20.73 16 10 C 0.52 20.70 7.35 87.66 0.64 21.35 16 11 O -0.58 -29.16 15.45 -3.03 -0.05 -29.21 16 12 C -0.06 -2.52 3.53 29.10 0.10 -2.42 16 13 C -0.19 -9.27 4.43 -19.40 -0.09 -9.36 16 14 C -0.09 -4.14 9.66 22.22 0.21 -3.92 16 15 C -0.24 -11.16 10.05 22.46 0.23 -10.93 16 16 C -0.12 -5.88 10.02 22.22 0.22 -5.66 16 17 C -0.19 -10.99 8.68 22.73 0.20 -10.79 16 18 C 0.10 5.35 5.56 -21.29 -0.12 5.23 16 19 C -0.48 -26.79 8.15 23.46 0.19 -26.60 16 20 H 0.07 3.63 6.68 -2.91 -0.02 3.61 16 21 C 0.04 2.05 5.16 85.26 0.44 2.49 16 22 N -0.82 -44.67 10.96 21.83 0.24 -44.43 16 23 Si 0.97 40.78 29.59 68.60 2.03 42.81 16 24 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 25 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 C 0.11 2.12 6.37 86.51 0.55 2.67 16 28 C -0.15 -2.97 5.71 30.82 0.18 -2.79 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.06 0.85 8.09 -2.39 -0.02 0.83 16 35 H 0.09 0.85 7.84 -2.38 -0.02 0.83 16 36 H 0.09 1.27 7.79 -2.39 -0.02 1.25 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 2.19 7.00 -2.39 -0.02 2.18 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.11 3.44 7.84 -2.39 -0.02 3.42 16 42 H 0.09 3.68 6.60 -2.39 -0.02 3.66 16 43 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 44 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 45 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 46 H 0.10 5.68 6.21 -2.91 -0.02 5.66 16 47 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 48 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 49 H 0.10 1.90 5.93 -2.39 -0.01 1.89 16 50 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.10 1.39 7.84 -2.39 -0.02 1.37 16 Total: -1.00 -76.56 409.48 3.44 -73.12 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.91 Total: 32.60 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 5.72 Total: -33.84 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -2.19 Total: -65.16 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -3.02 Total: -49.54 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -76.56 3.44 -73.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777404473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.442 kcal (2) G-P(sol) polarization free energy of solvation -76.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds