Wall clock time and date at job start Wed Apr 1 2020 04:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46854 * 2 1 4 4 C 1.52995 * 109.47032 * 120.00261 * 2 1 3 5 5 N 1.46494 * 109.47327 * 296.74597 * 4 2 1 6 6 C 1.34781 * 120.00033 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00203 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99733 * 179.71913 * 6 5 4 9 9 C 1.50702 * 109.47029 * 180.27401 * 8 6 5 10 10 C 1.37635 * 120.13035 * 265.00538 * 9 8 6 11 11 C 1.38613 * 120.24957 * 179.97438 * 10 9 8 12 12 C 1.38654 * 120.49755 * 0.02562 * 11 10 9 13 13 C 1.37600 * 120.25468 * 0.02904 * 12 11 10 14 14 C 1.40699 * 120.12533 * 84.73009 * 9 8 6 15 15 C 1.41397 * 120.24267 * 359.97438 * 14 9 8 16 16 H 1.08000 * 120.00041 * 330.92704 * 15 14 9 17 17 C 1.39942 * 120.00130 * 150.93474 * 15 14 9 18 18 N 1.30824 * 120.00286 * 166.38205 * 17 15 14 19 19 Si 1.86803 * 119.99816 * 346.37531 * 17 15 14 20 20 H 1.48495 * 109.46925 * 90.25565 * 19 17 15 21 21 H 1.48502 * 109.47044 * 210.25430 * 19 17 15 22 22 H 1.48498 * 109.47082 * 330.25468 * 19 17 15 23 23 C 1.53000 * 109.46868 * 240.00179 * 2 1 3 24 24 C 1.52998 * 109.46796 * 173.22343 * 23 2 1 25 25 C 1.53005 * 109.62764 * 185.82578 * 24 23 2 26 26 O 1.43748 * 109.63665 * 65.42913 * 24 23 2 27 27 C 1.44579 * 104.92168 * 215.71152 * 26 24 23 28 28 C 1.54911 * 101.63780 * 36.26805 * 27 26 24 29 29 O 1.43375 * 109.63110 * 306.21162 * 24 23 2 30 30 H 1.08999 * 109.47147 * 305.23178 * 1 2 3 31 31 H 1.09000 * 109.47497 * 65.23481 * 1 2 3 32 32 H 1.09001 * 109.47131 * 185.23151 * 1 2 3 33 33 H 1.09000 * 109.47206 * 176.74117 * 4 2 1 34 34 H 1.09009 * 109.47226 * 56.74738 * 4 2 1 35 35 H 0.97003 * 120.00081 * 359.97438 * 5 4 2 36 36 H 1.09003 * 109.47709 * 300.27852 * 8 6 5 37 37 H 1.09005 * 109.47116 * 60.28155 * 8 6 5 38 38 H 1.07997 * 119.87728 * 359.97438 * 10 9 8 39 39 H 1.07994 * 119.75243 * 179.97438 * 11 10 9 40 40 H 1.08011 * 119.87506 * 180.02562 * 12 11 10 41 41 H 1.07998 * 120.13080 * 179.97438 * 13 12 11 42 42 H 0.96999 * 119.99971 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47471 * 293.22436 * 23 2 1 44 44 H 1.09002 * 109.47429 * 53.22018 * 23 2 1 45 45 H 1.09004 * 109.47031 * 59.99571 * 25 24 23 46 46 H 1.08997 * 109.47197 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.47015 * 299.99654 * 25 24 23 48 48 H 1.09004 * 111.08654 * 278.15677 * 27 26 24 49 49 H 1.09003 * 110.98365 * 154.33401 * 27 26 24 50 50 H 1.09010 * 110.69490 * 205.96252 * 28 27 26 51 51 H 1.08998 * 110.69658 * 82.75596 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6168 0.0130 2.4441 6 6 1.9544 -0.4395 3.6679 7 8 2.6090 -1.4543 3.7800 8 6 1.5244 0.3194 4.8969 9 6 2.0318 -0.3879 6.1271 10 6 1.2224 -1.2779 6.7957 11 6 1.6868 -1.9301 7.9271 12 6 2.9691 -1.6943 8.3988 13 6 3.7954 -0.8078 7.7471 14 6 3.3369 -0.1451 6.5933 15 6 4.1797 0.7623 5.9110 16 1 4.0635 0.9121 4.8478 17 6 5.1644 1.4662 6.6133 18 7 6.1091 2.0948 5.9623 19 14 5.1297 1.5085 8.4805 20 1 5.9201 0.3712 9.0161 21 1 5.7158 2.7868 8.9577 22 1 3.7257 1.4012 8.9521 23 6 2.0400 -0.7212 -1.2493 24 6 3.5605 -0.5755 -1.3373 25 6 4.0581 -1.1687 -2.6569 26 8 4.1763 -1.2637 -0.2357 27 6 5.3199 -0.4528 0.1174 28 6 4.7747 0.9774 -0.1218 29 8 3.9162 0.8117 -1.2684 30 1 -0.3633 0.5928 0.8394 31 1 -0.3634 0.4305 -0.9331 32 1 -0.3633 -1.0234 0.0937 33 1 3.1284 -0.7722 1.2205 34 1 1.6298 -1.7308 1.2788 35 1 1.0941 0.8253 2.3544 36 1 1.9345 1.3287 4.8628 37 1 0.4360 0.3703 4.9301 38 1 0.2216 -1.4688 6.4373 39 1 1.0447 -2.6266 8.4457 40 1 3.3208 -2.2084 9.2812 41 1 4.7938 -0.6254 8.1164 42 1 6.7914 2.5830 6.4491 43 1 1.7790 -1.7779 -1.1908 44 1 1.5810 -0.2822 -2.1351 45 1 3.5950 -0.6404 -3.4903 46 1 5.1413 -1.0631 -2.7172 47 1 3.7925 -2.2248 -2.7036 48 1 6.1663 -0.6623 -0.5368 49 1 5.5926 -0.5967 1.1630 50 1 5.5883 1.6673 -0.3463 51 1 4.2037 1.3212 0.7406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777407699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:22 Heat of formation + Delta-G solvation = -116.677917 kcal Electronic energy + Delta-G solvation = -31990.179529 eV Core-core repulsion = 27853.980464 eV Total energy + Delta-G solvation = -4136.199065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.93607 -39.14915 -37.63092 -36.21740 -35.07310 -33.54219 -33.38486 -31.94709 -31.43649 -30.29373 -28.54140 -27.45613 -27.10709 -25.45794 -24.50156 -23.25114 -21.50860 -21.35735 -20.37771 -20.34623 -19.19644 -17.64602 -17.29559 -16.61575 -16.30994 -16.03764 -15.78652 -15.52995 -14.92393 -14.57645 -14.38701 -14.12258 -13.81878 -13.73981 -13.63957 -13.46609 -13.02360 -12.96039 -12.89084 -12.69892 -12.55830 -12.36133 -12.21090 -12.11800 -12.07372 -11.84909 -11.45461 -11.36567 -11.32676 -11.07061 -10.90010 -10.73109 -10.70348 -10.64024 -10.21025 -10.07118 -9.62622 -9.61323 -9.50941 -9.06856 -9.02260 -8.41905 -7.54447 -7.45459 -6.88959 -4.43639 2.62626 2.76202 3.15206 3.24129 3.32292 3.34998 3.48170 3.81308 3.84177 4.01750 4.45975 4.56084 4.58402 4.69344 4.79518 4.92455 5.07285 5.16267 5.19751 5.31184 5.40170 5.44896 5.51147 5.57247 5.59947 5.63482 5.70278 5.72517 5.85407 5.88056 5.89869 5.93358 5.94558 6.02155 6.08393 6.14837 6.23024 6.33658 6.35365 6.49099 6.64691 6.75498 6.98882 7.00526 7.03408 7.25823 7.48407 7.71557 7.79341 7.95140 8.10240 8.19862 8.40136 8.73357 8.87036 9.00985 10.13402 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.003303 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.537542 B = 8476.297410 C = 9746.036029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.081 0.919 4 C 0.111 3.889 5 N -0.744 5.744 6 C 0.514 3.486 7 O -0.522 6.522 8 C -0.076 4.076 9 C -0.163 4.163 10 C -0.070 4.070 11 C -0.242 4.242 12 C -0.080 4.080 13 C -0.241 4.241 14 C 0.110 3.890 15 C -0.439 4.439 16 H 0.089 0.911 17 C 0.083 3.917 18 N -0.815 5.815 19 Si 0.916 3.084 20 H -0.272 1.272 21 H -0.296 1.296 22 H -0.245 1.245 23 C -0.112 4.112 24 C 0.250 3.750 25 C -0.170 4.170 26 O -0.359 6.359 27 C 0.014 3.986 28 C 0.021 3.979 29 O -0.378 6.378 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.392 0.608 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.283 0.717 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.116 0.884 50 H 0.099 0.901 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 -0.020 -14.665 15.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 H 0.100 0.900 4 C -0.013 4.013 5 N -0.398 5.398 6 C 0.301 3.699 7 O -0.396 6.396 8 C -0.115 4.115 9 C -0.164 4.164 10 C -0.088 4.088 11 C -0.261 4.261 12 C -0.098 4.098 13 C -0.260 4.260 14 C 0.107 3.893 15 C -0.468 4.468 16 H 0.107 0.893 17 C -0.135 4.135 18 N -0.440 5.440 19 Si 0.744 3.256 20 H -0.199 1.199 21 H -0.224 1.224 22 H -0.168 1.168 23 C -0.150 4.150 24 C 0.173 3.827 25 C -0.227 4.227 26 O -0.280 6.280 27 C -0.062 4.062 28 C -0.056 4.056 29 O -0.300 6.300 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.225 0.775 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.134 0.866 50 H 0.117 0.883 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.578 -0.655 -14.700 15.737 hybrid contribution 0.156 0.417 0.727 0.852 sum -5.422 -0.238 -13.973 14.990 Atomic orbital electron populations 1.21840 0.94816 1.02078 1.01594 1.21313 0.95946 1.00655 0.94112 0.90035 1.21815 1.02237 0.94630 0.82581 1.46159 1.58215 1.29437 1.05991 1.21010 0.79241 0.85535 0.84111 1.90685 1.37384 1.25031 1.86485 1.20308 1.00035 1.00343 0.90861 1.19068 0.94659 1.04194 0.98513 1.20434 0.97528 0.95584 0.95259 1.20328 0.97104 1.07371 1.01298 1.20575 0.94186 0.97193 0.97841 1.21044 0.99465 1.03799 1.01647 1.17496 0.90599 0.90815 0.90432 1.19424 1.10909 1.19076 0.97413 0.89317 1.26150 0.92650 0.93196 1.01511 1.69659 1.09788 1.25440 1.39145 0.86312 0.80946 0.75997 0.82319 1.19867 1.22419 1.16839 1.21918 0.92273 1.02145 0.98706 1.23405 0.93268 0.78203 0.87833 1.22359 1.02248 1.01720 0.96416 1.89278 1.41002 1.47855 1.49831 1.24353 0.89522 0.88759 1.03563 1.24230 0.94111 0.97847 0.89367 1.88849 1.68123 1.25301 1.47681 0.92426 0.92675 0.92554 0.88826 0.92637 0.77524 0.88350 0.90540 0.89120 0.89034 0.89057 0.88200 0.90650 0.89929 0.89761 0.90924 0.91858 0.90654 0.90858 0.86625 0.88334 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.98 37.16 0.33 -1.03 16 2 C -0.10 -1.13 2.33 -90.62 -0.21 -1.34 16 3 H 0.08 0.95 7.29 -51.93 -0.38 0.58 16 4 C 0.11 1.62 4.66 -4.05 -0.02 1.60 16 5 N -0.74 -11.45 5.31 -60.30 -0.32 -11.77 16 6 C 0.51 10.28 7.42 -10.98 -0.08 10.19 16 7 O -0.52 -12.90 16.03 5.56 0.09 -12.81 16 8 C -0.08 -1.47 5.19 -29.03 -0.15 -1.62 16 9 C -0.16 -3.81 4.43 -103.91 -0.46 -4.27 16 10 C -0.07 -1.54 9.66 -39.66 -0.38 -1.92 16 11 C -0.24 -5.32 10.05 -39.29 -0.39 -5.72 16 12 C -0.08 -1.83 10.02 -39.66 -0.40 -2.23 16 13 C -0.24 -6.10 7.10 -38.87 -0.28 -6.37 16 14 C 0.11 2.84 5.18 -106.82 -0.55 2.29 16 15 C -0.44 -11.82 8.62 -37.74 -0.33 -12.15 16 16 H 0.09 2.49 6.94 -52.49 -0.36 2.13 16 17 C 0.08 2.16 5.46 -17.34 -0.09 2.07 16 18 N -0.82 -21.55 13.93 55.55 0.77 -20.77 16 19 Si 0.92 21.20 24.39 -169.99 -4.15 17.05 16 20 H -0.27 -6.22 6.51 56.52 0.37 -5.85 16 21 H -0.30 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.24 -5.77 6.80 56.52 0.38 -5.39 16 23 C -0.11 -1.14 4.31 -26.73 -0.12 -1.26 16 24 C 0.25 2.84 1.05 -26.73 -0.03 2.81 16 25 C -0.17 -1.57 9.20 37.16 0.34 -1.23 16 26 O -0.36 -4.88 8.00 -59.05 -0.47 -5.35 16 27 C 0.01 0.18 7.40 38.17 0.28 0.46 16 28 C 0.02 0.24 7.75 38.17 0.30 0.54 16 29 O -0.38 -4.61 9.83 -59.05 -0.58 -5.19 16 30 H 0.06 0.52 7.21 -51.93 -0.37 0.15 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.57 4.31 -51.93 -0.22 1.34 16 34 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.39 4.86 7.57 -40.82 -0.31 4.55 16 36 H 0.10 1.90 7.13 -51.93 -0.37 1.53 16 37 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 41 H 0.10 2.52 4.10 -52.49 -0.22 2.31 16 42 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 50 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 51 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -31.88 399.50 -9.05 -40.94 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -8.18 Total: 11.05 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.24 Total: -19.16 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.45 Total: -32.54 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.96 Total: -23.36 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.15 Total: 17.05 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.88 -9.05 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777407699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.741 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds