Wall clock time and date at job start Wed Apr 1 2020 05:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47055 * 2 1 4 4 C 1.46500 * 120.00123 * 270.00331 * 3 2 1 5 5 C 1.50702 * 109.46904 * 269.99929 * 4 3 2 6 6 H 1.07993 * 120.00490 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99735 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00009 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99850 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.46883 * 90.00692 * 9 7 5 11 11 H 1.48506 * 109.46975 * 210.00197 * 9 7 5 12 12 H 1.48494 * 109.47208 * 330.00066 * 9 7 5 13 13 C 1.34779 * 119.99707 * 90.00663 * 3 2 1 14 14 O 1.21282 * 119.99922 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00037 * 359.97438 * 13 3 2 16 16 O 1.45206 * 109.47021 * 180.02562 * 15 13 3 17 17 C 1.34224 * 117.00077 * 180.02562 * 16 15 13 18 18 O 1.20833 * 120.00103 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00302 * 180.02562 * 17 16 15 20 20 H 1.09009 * 109.46972 * 299.99362 * 19 17 16 21 21 C 1.53000 * 109.47495 * 59.99416 * 19 17 16 22 22 C 1.52999 * 109.47581 * 180.02562 * 19 17 16 23 23 C 1.50695 * 109.47535 * 174.99840 * 22 19 17 24 24 C 1.38235 * 119.99740 * 269.72161 * 23 22 19 25 25 C 1.38242 * 119.99730 * 179.78288 * 24 23 22 26 26 C 1.38234 * 119.99858 * 0.46966 * 25 24 23 27 27 C 1.50705 * 119.99623 * 179.78751 * 26 25 24 28 28 C 1.38235 * 120.00219 * 359.76507 * 26 25 24 29 29 C 1.38234 * 120.00054 * 89.99807 * 23 22 19 30 30 H 1.08998 * 109.46821 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46447 * 299.99424 * 1 2 3 32 32 H 1.09001 * 109.47495 * 59.99636 * 1 2 3 33 33 H 1.09002 * 109.47160 * 240.00485 * 2 1 3 34 34 H 1.09001 * 109.47495 * 120.00364 * 2 1 3 35 35 H 1.08991 * 109.47410 * 30.00046 * 4 3 2 36 36 H 1.09007 * 109.47039 * 150.00320 * 4 3 2 37 37 H 0.97004 * 120.00211 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47247 * 60.00371 * 15 13 3 39 39 H 1.09001 * 109.47358 * 299.99798 * 15 13 3 40 40 H 1.09005 * 109.46409 * 60.00337 * 21 19 17 41 41 H 1.08994 * 109.47081 * 180.02562 * 21 19 17 42 42 H 1.08998 * 109.47013 * 300.00782 * 21 19 17 43 43 H 1.09011 * 109.46681 * 294.99951 * 22 19 17 44 44 H 1.08995 * 109.47184 * 54.98964 * 22 19 17 45 45 H 1.07996 * 119.99897 * 0.02562 * 24 23 22 46 46 H 1.07997 * 119.99913 * 180.25509 * 25 24 23 47 47 H 1.09007 * 109.46662 * 269.97435 * 27 26 25 48 48 H 1.08995 * 109.47211 * 29.97285 * 27 26 25 49 49 H 1.08996 * 109.46932 * 149.98181 * 27 26 25 50 50 H 1.07994 * 120.00055 * 179.97438 * 28 26 25 51 51 H 1.07997 * 120.00107 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 5.3911 2.1836 -3.2575 9 14 3.0128 3.4361 -3.9286 10 1 3.1155 4.8562 -3.5068 11 1 3.4064 3.3139 -5.3554 12 1 1.6133 2.9694 -3.7595 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 8 2.3056 2.1959 3.5760 17 6 2.1347 1.7121 4.8163 18 8 1.7354 0.5827 4.9747 19 6 2.4398 2.5779 6.0115 20 1 3.4884 2.8748 5.9869 21 6 1.5554 3.8259 5.9764 22 6 2.1630 1.7919 7.2946 23 6 2.5834 2.6122 8.4868 24 6 3.8702 2.5053 8.9802 25 6 4.2572 3.2611 10.0711 26 6 3.3544 4.1165 10.6745 27 6 3.7750 4.9369 11.8667 28 6 2.0661 4.2198 10.1841 29 6 1.6805 3.4673 9.0905 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5816 1.6879 -2.0283 36 1 2.0955 3.1412 -1.1383 37 1 5.7172 2.5741 -4.0834 38 1 2.6213 0.4185 2.5302 39 1 0.9433 1.0124 2.5300 40 1 0.5069 3.5288 6.0010 41 1 1.7764 4.4522 6.8406 42 1 1.7531 4.3856 5.0622 43 1 1.0976 1.5712 7.3628 44 1 2.7268 0.8592 7.2782 45 1 4.5744 1.8342 8.5110 46 1 5.2638 3.1806 10.4540 47 1 3.5769 4.3772 12.7809 48 1 4.8404 5.1568 11.7989 49 1 3.2116 5.8699 11.8827 50 1 1.3608 4.8879 10.6557 51 1 0.6739 3.5478 8.7075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778880779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:51 Heat of formation + Delta-G solvation = -128.561125 kcal Electronic energy + Delta-G solvation = -29794.847305 eV Core-core repulsion = 25658.132945 eV Total energy + Delta-G solvation = -4136.714360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.94758 -40.77026 -40.29321 -37.83513 -37.04206 -36.39442 -34.89207 -33.24558 -32.06008 -31.79346 -30.78551 -29.34193 -28.67794 -26.57933 -24.94487 -24.42599 -23.88127 -23.50882 -21.88558 -21.00828 -20.21893 -19.14715 -18.98236 -18.16347 -17.82202 -17.52446 -16.99347 -16.62736 -16.54140 -16.30654 -15.89678 -15.75958 -15.17823 -15.02791 -14.79583 -14.65245 -14.46805 -14.26997 -14.19359 -14.05129 -13.79555 -13.69119 -13.44552 -13.40881 -13.22826 -13.15091 -12.94216 -12.79974 -12.58063 -12.43571 -12.17764 -12.15845 -12.11091 -12.02708 -11.91534 -11.79466 -11.75279 -11.72572 -11.48054 -10.84312 -10.80103 -9.77489 -9.54320 -9.36500 -8.34813 -6.40584 0.39936 0.53971 1.04060 1.24292 1.33704 1.37228 1.45400 1.56390 2.30266 2.32307 2.85295 2.99295 3.36841 3.46939 3.77568 3.83199 3.85247 3.94584 4.02507 4.04273 4.12576 4.18594 4.19334 4.28535 4.35219 4.42396 4.57127 4.63283 4.72165 4.75232 4.78935 4.83204 4.85126 4.85819 4.92415 4.94418 4.97954 4.99005 5.08910 5.19482 5.24329 5.28430 5.33976 5.35011 5.43795 5.55000 5.55509 5.74218 5.75485 6.16313 6.20341 6.47547 6.60141 6.60968 7.14218 7.27538 8.81982 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.001876 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.914413 B =14924.527918 C =15652.495811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.227 3.773 5 C -0.540 4.540 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.236 1.236 13 C 0.501 3.499 14 O -0.574 6.574 15 C 0.060 3.940 16 O -0.347 6.347 17 C 0.467 3.533 18 O -0.525 6.525 19 C -0.071 4.071 20 H 0.116 0.884 21 C -0.144 4.144 22 C -0.056 4.056 23 C -0.095 4.095 24 C -0.123 4.123 25 C -0.131 4.131 26 C -0.099 4.099 27 C -0.114 4.114 28 C -0.129 4.129 29 C -0.114 4.114 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.021 0.979 37 H 0.269 0.731 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.138 0.862 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.596 -0.290 28.059 30.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.105 3.895 5 C -0.578 4.578 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.159 1.159 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.017 4.017 16 O -0.263 6.263 17 C 0.311 3.689 18 O -0.414 6.414 19 C -0.090 4.090 20 H 0.134 0.866 21 C -0.201 4.201 22 C -0.093 4.093 23 C -0.096 4.096 24 C -0.141 4.141 25 C -0.149 4.149 26 C -0.099 4.099 27 C -0.171 4.171 28 C -0.147 4.147 29 C -0.131 4.131 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.145 0.855 46 H 0.151 0.849 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.156 0.844 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.396 -0.026 27.915 30.151 hybrid contribution 0.441 0.168 -1.062 1.162 sum -10.955 0.142 26.853 29.002 Atomic orbital electron populations 1.22178 0.93628 1.03932 1.02280 1.21892 0.95932 0.80760 1.04376 1.47969 1.63859 1.15320 1.05286 1.19375 0.95061 0.93159 0.81932 1.21554 0.97055 1.32327 1.06884 0.95253 1.25862 0.96758 0.97158 0.98944 1.70047 1.17436 1.46430 1.24464 0.85714 0.80528 0.78973 0.77744 1.20202 1.19998 1.15864 1.20540 0.78072 0.86681 0.85868 1.90678 1.46808 1.20132 1.87730 1.22818 1.04762 0.92005 0.82118 1.86583 1.78906 1.45534 1.15278 1.24399 0.73243 0.86958 0.84313 1.90639 1.43312 1.20717 1.86691 1.21114 1.04216 0.95681 0.88014 0.86638 1.21849 0.99206 0.95200 1.03829 1.20393 1.03279 0.96895 0.88765 1.19739 0.94469 0.98354 0.96989 1.21268 0.95921 0.99882 0.96995 1.21265 1.00234 0.96890 0.96463 1.20275 0.94119 0.97541 0.97959 1.20834 1.02285 0.99065 0.94887 1.21301 0.96179 1.00269 0.96911 1.21273 0.99984 0.95901 0.95990 0.88535 0.92273 0.92819 0.90002 0.88946 0.92613 0.96090 0.92230 0.87043 0.85682 0.91181 0.89280 0.92216 0.89686 0.90360 0.85470 0.84917 0.90487 0.91072 0.90771 0.84440 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 10.24 71.98 0.74 -2.76 16 2 C 0.09 2.64 5.93 86.38 0.51 3.16 16 3 N -0.59 -23.82 2.46 -826.15 -2.03 -25.85 16 4 C 0.23 10.92 4.23 85.63 0.36 11.29 16 5 C -0.54 -31.72 9.94 25.60 0.25 -31.47 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 7 C 0.01 0.65 5.47 84.66 0.46 1.11 16 8 N -0.94 -59.70 13.96 21.45 0.30 -59.40 16 9 Si 0.95 44.16 27.47 68.60 1.88 46.05 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.24 -9.75 6.54 99.48 0.65 -9.09 16 13 C 0.50 20.80 7.75 87.66 0.68 21.48 16 14 O -0.57 -29.71 16.08 15.76 0.25 -29.46 16 15 C 0.06 1.84 4.50 71.24 0.32 2.16 16 16 O -0.35 -11.20 9.66 -45.00 -0.43 -11.63 16 17 C 0.47 12.34 7.26 71.23 0.52 12.85 16 18 O -0.52 -14.99 15.67 21.94 0.34 -14.64 16 19 C -0.07 -1.41 2.81 -11.54 -0.03 -1.44 16 20 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 21 C -0.14 -2.53 8.70 71.98 0.63 -1.90 16 22 C -0.06 -0.95 4.19 29.85 0.13 -0.83 16 23 C -0.10 -1.53 4.71 -19.87 -0.09 -1.63 16 24 C -0.12 -1.97 9.70 22.27 0.22 -1.75 16 25 C -0.13 -1.92 9.70 22.27 0.22 -1.71 16 26 C -0.10 -1.35 5.88 -19.86 -0.12 -1.47 16 27 C -0.11 -1.02 10.01 71.24 0.71 -0.31 16 28 C -0.13 -1.72 9.70 22.27 0.22 -1.50 16 29 C -0.11 -1.61 7.97 22.27 0.18 -1.44 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.19 7.22 -2.38 -0.02 1.18 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 34 H 0.09 2.19 6.44 -2.39 -0.02 2.17 16 35 H 0.06 2.44 7.13 -2.39 -0.02 2.42 16 36 H 0.02 1.09 6.85 -2.38 -0.02 1.07 16 37 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 38 H 0.11 3.10 7.39 -2.39 -0.02 3.09 16 39 H 0.13 3.08 7.18 -2.39 -0.02 3.06 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.09 1.32 6.27 -2.39 -0.01 1.30 16 42 H 0.06 1.26 8.11 -2.39 -0.02 1.24 16 43 H 0.08 1.39 8.09 -2.38 -0.02 1.37 16 44 H 0.08 1.42 7.90 -2.39 -0.02 1.40 16 45 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 46 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 48 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 49 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 50 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 51 H 0.14 1.50 8.04 -2.91 -0.02 1.48 16 Total: -1.00 -79.77 420.84 7.06 -72.71 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.85 Total: 18.37 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 5.89 Total: 3.85 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -1.73 Total: -85.25 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: 0.16 Total: -55.73 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.05 kcal Total: -79.77 7.06 -72.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778880779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.852 kcal (2) G-P(sol) polarization free energy of solvation -79.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds