Wall clock time and date at job start Wed Apr 1 2020 05:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47149 * 2 1 4 4 C 1.46500 * 120.00020 * 270.00434 * 3 2 1 5 5 C 1.50707 * 109.46926 * 269.99544 * 4 3 2 6 6 H 1.08001 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99811 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00208 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47265 * 60.00080 * 9 7 5 11 11 H 1.48498 * 109.47290 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47207 * 300.00361 * 9 7 5 13 13 C 1.34779 * 120.00034 * 89.99724 * 3 2 1 14 14 O 1.21273 * 120.00001 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99820 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.47181 * 179.97438 * 15 13 3 17 17 C 1.34233 * 117.00030 * 179.97438 * 16 15 13 18 18 O 1.20820 * 120.00130 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99798 * 179.97438 * 17 16 15 20 20 H 1.09003 * 109.47040 * 59.99608 * 19 17 16 21 21 C 1.52998 * 109.47299 * 299.99745 * 19 17 16 22 22 C 1.52999 * 109.46887 * 179.97438 * 19 17 16 23 23 C 1.50700 * 109.46924 * 185.00098 * 22 19 17 24 24 C 1.38234 * 120.00260 * 90.00031 * 23 22 19 25 25 C 1.38234 * 120.00240 * 179.97438 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.26327 * 25 24 23 27 27 C 1.50693 * 120.00207 * 179.72405 * 26 25 24 28 28 C 1.38239 * 119.99756 * 359.45918 * 26 25 24 29 29 C 1.38234 * 119.99992 * 0.53603 * 28 26 25 30 30 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47204 * 299.99733 * 1 2 3 32 32 H 1.08998 * 109.47430 * 59.99821 * 1 2 3 33 33 H 1.09003 * 109.47204 * 240.00267 * 2 1 3 34 34 H 1.08998 * 109.47430 * 120.00179 * 2 1 3 35 35 H 1.08992 * 109.47503 * 29.99535 * 4 3 2 36 36 H 1.08995 * 109.46979 * 149.99985 * 4 3 2 37 37 H 0.96997 * 119.99778 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.47719 * 59.99556 * 15 13 3 39 39 H 1.09002 * 109.46890 * 299.99398 * 15 13 3 40 40 H 1.09002 * 109.47282 * 59.99919 * 21 19 17 41 41 H 1.08997 * 109.47593 * 179.97438 * 21 19 17 42 42 H 1.08998 * 109.47300 * 300.00235 * 21 19 17 43 43 H 1.08999 * 109.47332 * 64.99947 * 22 19 17 44 44 H 1.08999 * 109.47492 * 304.99884 * 22 19 17 45 45 H 1.07999 * 119.99751 * 359.97438 * 24 23 22 46 46 H 1.08002 * 119.99744 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47363 * 89.99511 * 27 26 25 48 48 H 1.09000 * 109.47097 * 209.99342 * 27 26 25 49 49 H 1.09001 * 109.47081 * 329.99847 * 27 26 25 50 50 H 1.08000 * 119.99962 * 180.30225 * 28 26 25 51 51 H 1.08002 * 120.00264 * 179.76377 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8780 8 7 3.3489 3.1258 -3.6181 9 14 5.9130 2.0957 -3.4176 10 1 6.1402 0.6390 -3.5949 11 1 6.1605 2.7959 -4.7036 12 1 6.8410 2.6191 -2.3830 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9922 1.3060 2.4723 16 8 2.3072 2.1954 3.5760 17 6 2.1361 1.7117 4.8163 18 8 1.7360 0.5827 4.9746 19 6 2.4431 2.5769 6.0115 20 1 1.8143 3.4669 5.9868 21 6 3.9154 2.9915 5.9763 22 6 2.1644 1.7915 7.2946 23 6 2.3531 2.6938 8.4868 24 6 1.2865 3.4239 8.9768 25 6 1.4595 4.2512 10.0707 26 6 2.7004 4.3525 10.6713 27 6 2.8905 5.2590 11.8599 28 6 3.7657 3.6180 10.1848 29 6 3.5927 2.7906 9.0910 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5817 1.6878 -2.0284 36 1 2.0955 3.1411 -1.1383 37 1 3.6750 3.5163 -4.4440 38 1 2.6227 0.4187 2.5299 39 1 0.9443 1.0116 2.5302 40 1 4.1135 3.5511 5.0621 41 1 4.1373 3.6176 6.8404 42 1 4.5442 2.1015 6.0009 43 1 2.8542 0.9503 7.3628 44 1 1.1396 1.4206 7.2784 45 1 0.3180 3.3480 8.5050 46 1 0.6262 4.8219 10.4532 47 1 2.6947 4.7024 12.7764 48 1 3.9149 5.6313 11.8728 49 1 2.1994 6.0991 11.7904 50 1 4.7341 3.6934 10.6571 51 1 4.4259 2.2197 8.7086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778880780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:56 Heat of formation + Delta-G solvation = -114.732525 kcal Electronic energy + Delta-G solvation = -29764.770432 eV Core-core repulsion = 25628.655725 eV Total energy + Delta-G solvation = -4136.114707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78876 -39.78615 -38.96335 -36.63154 -35.58015 -35.30001 -32.85965 -32.58627 -31.23029 -30.19031 -29.29855 -28.52205 -26.61365 -25.84698 -23.89126 -23.08382 -22.96059 -22.45703 -21.14152 -20.10537 -18.66372 -17.86107 -16.78577 -16.74017 -16.36756 -16.29265 -15.83637 -15.80355 -15.34284 -15.20730 -14.77944 -14.38018 -14.21750 -14.00484 -13.70084 -13.53066 -13.42286 -13.31053 -12.95444 -12.82662 -12.69832 -12.49010 -12.22735 -12.19173 -12.08574 -12.06035 -11.64301 -11.47533 -11.35094 -11.29050 -11.23977 -11.13428 -10.96427 -10.87515 -10.60395 -10.52876 -10.41014 -10.15738 -9.68793 -9.19531 -9.00356 -8.77665 -8.45228 -7.76232 -6.06503 -4.11513 1.00043 1.11875 2.14369 2.47157 3.24482 3.31199 3.35622 3.39440 3.43893 3.85145 4.39389 4.44414 4.45955 4.54572 4.62964 4.66677 4.73486 4.86267 4.87854 4.96077 5.04971 5.17058 5.20622 5.21396 5.23087 5.28055 5.32012 5.36253 5.43196 5.48683 5.56740 5.57790 5.61049 5.72199 5.76425 5.80497 5.88270 5.98492 6.03627 6.12485 6.18131 6.29987 6.35255 6.38596 6.43830 6.72206 6.98943 7.38737 7.46238 7.69892 7.89410 8.19507 8.29016 8.83672 8.98466 9.53464 11.01570 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.001886 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.007678 B =14839.305619 C =15782.495060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.326 6.326 17 C 0.465 3.535 18 O -0.513 6.513 19 C -0.075 4.075 20 H 0.111 0.889 21 C -0.150 4.150 22 C -0.066 4.066 23 C -0.085 4.085 24 C -0.110 4.110 25 C -0.119 4.119 26 C -0.091 4.091 27 C -0.115 4.115 28 C -0.120 4.120 29 C -0.108 4.108 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.121 0.879 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 -2.191 27.352 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.029 4.029 16 O -0.241 6.241 17 C 0.308 3.692 18 O -0.401 6.401 19 C -0.094 4.094 20 H 0.129 0.871 21 C -0.207 4.207 22 C -0.103 4.103 23 C -0.085 4.085 24 C -0.128 4.128 25 C -0.137 4.137 26 C -0.091 4.091 27 C -0.172 4.172 28 C -0.138 4.138 29 C -0.126 4.126 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.139 0.861 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.249 -1.797 27.150 27.540 hybrid contribution 0.830 -0.438 -0.516 1.071 sum -3.418 -2.235 26.634 26.946 Atomic orbital electron populations 1.22233 0.96542 1.01685 1.02403 1.21506 0.93749 0.83973 1.03011 1.48212 1.63838 1.13386 1.07146 1.19323 0.96446 0.93701 0.77570 1.21392 0.96863 1.32201 1.06362 0.92446 1.24930 0.97908 0.94857 0.96344 1.69920 1.35743 1.33255 1.14350 0.86547 0.84716 0.78253 0.77839 1.20243 1.21152 1.20146 1.19716 0.79721 0.87153 0.84303 1.90714 1.44457 1.17521 1.86738 1.22970 1.02642 0.92699 0.84556 1.86573 1.78304 1.44881 1.14329 1.23787 0.73874 0.86870 0.84717 1.90647 1.42643 1.20079 1.86760 1.20990 1.00849 0.98527 0.89026 0.87097 1.21884 0.92328 1.02388 1.04113 1.20491 1.04055 0.96458 0.89306 1.19760 0.93760 0.98058 0.96891 1.21076 0.98694 0.96528 0.96550 1.21022 0.96792 0.99456 0.96456 1.19939 0.93691 0.97955 0.97524 1.20794 1.02583 0.98203 0.95573 1.21033 0.98585 0.97239 0.96953 1.21092 0.96783 0.98906 0.95827 0.91902 0.93152 0.91782 0.89419 0.91776 0.94641 0.93716 0.92615 0.88745 0.88810 0.90488 0.90693 0.92023 0.89930 0.89824 0.85938 0.86126 0.91271 0.91551 0.91564 0.86113 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.58 16 3 N -0.59 -12.41 2.46 -175.06 -0.43 -12.84 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.39 16 5 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.74 7.75 -10.98 -0.09 10.66 16 14 O -0.52 -13.38 16.08 -14.10 -0.23 -13.61 16 15 C 0.05 0.80 4.50 36.01 0.16 0.96 16 16 O -0.33 -5.41 9.66 -45.91 -0.44 -5.85 16 17 C 0.46 6.44 7.26 36.01 0.26 6.70 16 18 O -0.51 -7.80 15.67 -18.74 -0.29 -8.09 16 19 C -0.07 -0.78 2.82 -91.77 -0.26 -1.04 16 20 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 21 C -0.15 -1.47 8.70 37.16 0.32 -1.15 16 22 C -0.07 -0.60 4.19 -27.88 -0.12 -0.72 16 23 C -0.08 -0.73 4.71 -104.62 -0.49 -1.22 16 24 C -0.11 -0.91 9.70 -39.58 -0.38 -1.29 16 25 C -0.12 -0.92 9.70 -39.58 -0.38 -1.31 16 26 C -0.09 -0.69 5.88 -104.63 -0.62 -1.31 16 27 C -0.11 -0.61 10.01 36.00 0.36 -0.25 16 28 C -0.12 -0.92 9.70 -39.58 -0.38 -1.30 16 29 C -0.11 -0.87 7.97 -39.58 -0.32 -1.19 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 34 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 35 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.09 1.40 7.40 -51.93 -0.38 1.02 16 39 H 0.09 1.34 7.18 -51.93 -0.37 0.97 16 40 H 0.08 0.88 8.11 -51.93 -0.42 0.45 16 41 H 0.07 0.64 6.27 -51.93 -0.33 0.31 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 44 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 49 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 50 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 51 H 0.12 0.85 8.04 -52.49 -0.42 0.43 16 LS Contribution 424.46 15.07 6.40 6.40 Total: -1.00 -34.32 424.46 -9.76 -44.08 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.46 Total: -1.26 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.02 Total: 0.05 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.31 Total: -38.48 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.96 Total: -27.55 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -34.32 -9.76 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778880780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.657 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds