Wall clock time and date at job start Wed Apr 1 2020 05:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47149 * 2 1 4 4 C 1.46500 * 120.00020 * 270.00434 * 3 2 1 5 5 C 1.50707 * 109.46926 * 269.99544 * 4 3 2 6 6 H 1.08001 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99811 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00208 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47265 * 60.00080 * 9 7 5 11 11 H 1.48498 * 109.47290 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47207 * 300.00361 * 9 7 5 13 13 C 1.34779 * 120.00034 * 89.99724 * 3 2 1 14 14 O 1.21273 * 120.00001 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99820 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.47181 * 179.97438 * 15 13 3 17 17 C 1.34233 * 117.00030 * 179.97438 * 16 15 13 18 18 O 1.20820 * 120.00130 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99798 * 179.97438 * 17 16 15 20 20 H 1.09003 * 109.47040 * 59.99608 * 19 17 16 21 21 C 1.52998 * 109.47299 * 299.99745 * 19 17 16 22 22 C 1.52999 * 109.46887 * 179.97438 * 19 17 16 23 23 C 1.50700 * 109.46924 * 185.00098 * 22 19 17 24 24 C 1.38234 * 120.00260 * 90.00031 * 23 22 19 25 25 C 1.38234 * 120.00240 * 179.97438 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.26327 * 25 24 23 27 27 C 1.50693 * 120.00207 * 179.72405 * 26 25 24 28 28 C 1.38239 * 119.99756 * 359.45918 * 26 25 24 29 29 C 1.38234 * 119.99992 * 0.53603 * 28 26 25 30 30 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47204 * 299.99733 * 1 2 3 32 32 H 1.08998 * 109.47430 * 59.99821 * 1 2 3 33 33 H 1.09003 * 109.47204 * 240.00267 * 2 1 3 34 34 H 1.08998 * 109.47430 * 120.00179 * 2 1 3 35 35 H 1.08992 * 109.47503 * 29.99535 * 4 3 2 36 36 H 1.08995 * 109.46979 * 149.99985 * 4 3 2 37 37 H 0.96997 * 119.99778 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.47719 * 59.99556 * 15 13 3 39 39 H 1.09002 * 109.46890 * 299.99398 * 15 13 3 40 40 H 1.09002 * 109.47282 * 59.99919 * 21 19 17 41 41 H 1.08997 * 109.47593 * 179.97438 * 21 19 17 42 42 H 1.08998 * 109.47300 * 300.00235 * 21 19 17 43 43 H 1.08999 * 109.47332 * 64.99947 * 22 19 17 44 44 H 1.08999 * 109.47492 * 304.99884 * 22 19 17 45 45 H 1.07999 * 119.99751 * 359.97438 * 24 23 22 46 46 H 1.08002 * 119.99744 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47363 * 89.99511 * 27 26 25 48 48 H 1.09000 * 109.47097 * 209.99342 * 27 26 25 49 49 H 1.09001 * 109.47081 * 329.99847 * 27 26 25 50 50 H 1.08000 * 119.99962 * 180.30225 * 28 26 25 51 51 H 1.08002 * 120.00264 * 179.76377 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8780 8 7 3.3489 3.1258 -3.6181 9 14 5.9130 2.0957 -3.4176 10 1 6.1402 0.6390 -3.5949 11 1 6.1605 2.7959 -4.7036 12 1 6.8410 2.6191 -2.3830 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9922 1.3060 2.4723 16 8 2.3072 2.1954 3.5760 17 6 2.1361 1.7117 4.8163 18 8 1.7360 0.5827 4.9746 19 6 2.4431 2.5769 6.0115 20 1 1.8143 3.4669 5.9868 21 6 3.9154 2.9915 5.9763 22 6 2.1644 1.7915 7.2946 23 6 2.3531 2.6938 8.4868 24 6 1.2865 3.4239 8.9768 25 6 1.4595 4.2512 10.0707 26 6 2.7004 4.3525 10.6713 27 6 2.8905 5.2590 11.8599 28 6 3.7657 3.6180 10.1848 29 6 3.5927 2.7906 9.0910 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5817 1.6878 -2.0284 36 1 2.0955 3.1411 -1.1383 37 1 3.6750 3.5163 -4.4440 38 1 2.6227 0.4187 2.5299 39 1 0.9443 1.0116 2.5302 40 1 4.1135 3.5511 5.0621 41 1 4.1373 3.6176 6.8404 42 1 4.5442 2.1015 6.0009 43 1 2.8542 0.9503 7.3628 44 1 1.1396 1.4206 7.2784 45 1 0.3180 3.3480 8.5050 46 1 0.6262 4.8219 10.4532 47 1 2.6947 4.7024 12.7764 48 1 3.9149 5.6313 11.8728 49 1 2.1994 6.0991 11.7904 50 1 4.7341 3.6934 10.6571 51 1 4.4259 2.2197 8.7086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778880780.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:55 Heat of formation + Delta-G solvation = -131.520853 kcal Electronic energy + Delta-G solvation = -29765.498429 eV Core-core repulsion = 25628.655725 eV Total energy + Delta-G solvation = -4136.842703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.93226 -40.72412 -40.27764 -37.81444 -36.99602 -36.39000 -34.94234 -33.23820 -31.79372 -31.74921 -30.68796 -29.27399 -28.38871 -26.58074 -25.14874 -24.52238 -23.96857 -23.51145 -21.88121 -20.99950 -20.25536 -18.97445 -18.65019 -18.06040 -17.89200 -17.48470 -16.96141 -16.65474 -16.51117 -16.18600 -16.01586 -15.83840 -15.17166 -14.90239 -14.72754 -14.63447 -14.45320 -14.24616 -14.17111 -13.87266 -13.74766 -13.57014 -13.44492 -13.28894 -13.20608 -13.08740 -12.94126 -12.79946 -12.66813 -12.52632 -12.22315 -12.17081 -12.12889 -12.05097 -11.91231 -11.80248 -11.74056 -11.71431 -11.47186 -10.73675 -10.64698 -9.77094 -9.55352 -9.36029 -8.23532 -6.38176 0.40391 0.54453 1.04909 1.27922 1.36920 1.41043 1.48233 1.61249 2.31218 2.44147 2.85793 3.06403 3.40601 3.48008 3.77770 3.83743 3.86287 3.96199 4.02972 4.04647 4.14201 4.19050 4.19796 4.28914 4.37052 4.42619 4.57864 4.63699 4.72180 4.78642 4.82461 4.85883 4.87899 4.92804 4.93587 4.99100 5.02017 5.09509 5.17530 5.20708 5.25244 5.29327 5.34462 5.35248 5.53433 5.55602 5.74691 5.75869 5.78995 6.03561 6.16732 6.51958 6.64489 6.70785 7.20630 7.36027 8.83628 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.001886 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.007678 B =14839.305619 C =15782.495060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.061 3.939 16 O -0.348 6.348 17 C 0.466 3.534 18 O -0.524 6.524 19 C -0.070 4.070 20 H 0.120 0.880 21 C -0.145 4.145 22 C -0.056 4.056 23 C -0.095 4.095 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.099 4.099 27 C -0.114 4.114 28 C -0.130 4.130 29 C -0.115 4.115 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.030 0.970 36 H -0.001 1.001 37 H 0.268 0.732 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.136 0.864 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 -3.683 29.209 29.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.286 3.714 14 O -0.457 6.457 15 C -0.016 4.016 16 O -0.263 6.263 17 C 0.311 3.689 18 O -0.413 6.413 19 C -0.089 4.089 20 H 0.138 0.862 21 C -0.202 4.202 22 C -0.093 4.093 23 C -0.095 4.095 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.099 4.099 27 C -0.171 4.171 28 C -0.148 4.148 29 C -0.133 4.133 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.148 0.852 46 H 0.153 0.847 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.154 0.846 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.844 -3.346 29.026 29.470 hybrid contribution 0.646 0.035 -1.038 1.223 sum -3.198 -3.311 27.988 28.364 Atomic orbital electron populations 1.22175 0.94324 1.03782 1.01829 1.21863 0.95560 0.80997 1.04377 1.48208 1.63593 1.15231 1.05685 1.18783 0.95582 0.91647 0.79767 1.21682 0.97835 1.32348 1.06658 0.92717 1.25849 1.02398 0.94419 0.96389 1.70041 1.37786 1.33982 1.14775 0.85475 0.78991 0.79042 0.77354 1.18427 1.20324 1.20364 1.20558 0.78331 0.86649 0.85857 1.90677 1.47101 1.20195 1.87753 1.22822 1.04627 0.92085 0.82074 1.86588 1.78846 1.45608 1.15286 1.24401 0.73121 0.87095 0.84321 1.90634 1.43299 1.20717 1.86693 1.21107 1.01301 0.98445 0.88026 0.86244 1.21853 0.92020 1.02601 1.03775 1.20394 1.03865 0.96321 0.88747 1.19741 0.94264 0.98533 0.97003 1.21269 0.99067 0.96629 0.96895 1.21272 0.97510 0.99566 0.96417 1.20272 0.93609 0.97994 0.98024 1.20831 1.03216 0.98084 0.94941 1.21291 0.99424 0.97099 0.96944 1.21269 0.96912 0.99107 0.96039 0.88385 0.92444 0.93685 0.89999 0.88446 0.95253 0.98266 0.92354 0.86592 0.86117 0.92370 0.89210 0.91528 0.89983 0.90042 0.85166 0.84744 0.90496 0.90887 0.90962 0.84623 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 10.24 71.98 0.74 -3.26 16 2 C 0.09 2.83 5.93 86.38 0.51 3.34 16 3 N -0.59 -25.24 2.46 -826.16 -2.03 -27.27 16 4 C 0.26 14.17 5.16 85.64 0.44 14.61 16 5 C -0.55 -31.50 9.39 25.60 0.24 -31.26 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 9 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.50 21.45 7.75 87.66 0.68 22.13 16 14 O -0.58 -31.10 16.08 15.79 0.25 -30.85 16 15 C 0.06 1.90 4.50 71.24 0.32 2.22 16 16 O -0.35 -11.34 9.66 -45.09 -0.44 -11.78 16 17 C 0.47 12.38 7.26 71.24 0.52 12.89 16 18 O -0.52 -14.98 15.67 21.98 0.34 -14.64 16 19 C -0.07 -1.38 2.82 -11.54 -0.03 -1.41 16 20 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 21 C -0.15 -2.74 8.70 71.98 0.63 -2.11 16 22 C -0.06 -0.95 4.19 29.85 0.13 -0.82 16 23 C -0.10 -1.52 4.71 -19.86 -0.09 -1.61 16 24 C -0.12 -1.84 9.70 22.27 0.22 -1.63 16 25 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 26 C -0.10 -1.34 5.88 -19.87 -0.12 -1.46 16 27 C -0.11 -1.01 10.01 71.23 0.71 -0.30 16 28 C -0.13 -1.78 9.70 22.27 0.22 -1.56 16 29 C -0.12 -1.70 7.97 22.27 0.18 -1.52 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 34 H 0.10 2.30 6.44 -2.39 -0.02 2.28 16 35 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 36 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 37 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.12 3.15 7.40 -2.39 -0.02 3.13 16 39 H 0.12 3.14 7.18 -2.39 -0.02 3.12 16 40 H 0.06 1.32 8.11 -2.39 -0.02 1.31 16 41 H 0.09 1.42 6.27 -2.39 -0.01 1.40 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 44 H 0.08 1.41 7.90 -2.39 -0.02 1.39 16 45 H 0.13 1.68 8.06 -2.91 -0.02 1.65 16 46 H 0.13 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 49 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 50 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 51 H 0.13 1.62 8.04 -2.91 -0.02 1.59 16 Total: -1.00 -76.82 424.46 7.30 -69.52 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.90 Total: 16.17 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 5.96 Total: 7.59 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -1.74 Total: -82.91 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: 0.16 Total: -57.26 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -76.82 7.30 -69.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778880780.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.004 kcal (2) G-P(sol) polarization free energy of solvation -76.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds