Wall clock time and date at job start Wed Apr 1 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35994 * 116.99891 * 2 1 4 4 C 1.38558 * 120.07552 * 0.02606 * 3 2 1 5 5 C 1.38242 * 120.00012 * 179.70745 * 4 3 2 6 6 C 1.38260 * 120.14366 * 0.53833 * 5 4 3 7 7 C 1.50700 * 119.92364 * 179.72616 * 6 5 4 8 8 N 1.46903 * 109.47313 * 269.72895 * 7 6 5 9 9 C 1.48563 * 110.99848 * 290.12908 * 8 7 6 10 10 C 1.54375 * 104.59304 * 200.95984 * 9 8 7 11 11 H 1.09006 * 118.15734 * 244.14754 * 10 9 8 12 12 C 1.52994 * 118.13113 * 87.23005 * 10 9 8 13 13 C 1.53000 * 60.54715 * 268.32888 * 12 10 9 14 14 C 1.52997 * 119.52827 * 248.25683 * 13 12 10 15 15 O 1.42898 * 109.47319 * 250.23413 * 14 13 12 16 16 C 1.52143 * 110.66726 * 174.64323 * 8 7 6 17 17 C 1.38238 * 120.14549 * 359.45711 * 6 5 4 18 18 C 1.38569 * 120.00122 * 0.27526 * 17 6 5 19 19 O 1.35990 * 120.07476 * 179.97438 * 18 17 6 20 20 C 1.42900 * 116.99824 * 359.97438 * 19 18 17 21 21 C 1.53005 * 109.47150 * 180.02562 * 20 19 18 22 22 C 1.50695 * 109.47401 * 179.97438 * 21 20 19 23 23 H 1.08003 * 119.99868 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00091 * 179.97438 * 22 21 20 25 25 N 1.31509 * 119.99850 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99815 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47397 * 60.00031 * 26 24 22 28 28 H 1.48504 * 109.46916 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47194 * 299.99814 * 26 24 22 30 30 H 1.09007 * 109.47113 * 300.00128 * 1 2 3 31 31 H 1.08999 * 109.47193 * 59.99548 * 1 2 3 32 32 H 1.08993 * 109.47267 * 180.02562 * 1 2 3 33 33 H 1.07998 * 120.00197 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.93363 * 180.29251 * 5 4 3 35 35 H 1.09001 * 109.46410 * 149.73285 * 7 6 5 36 36 H 1.08995 * 109.47274 * 29.73188 * 7 6 5 37 37 H 1.09003 * 110.40883 * 82.18370 * 9 8 7 38 38 H 1.08993 * 110.41103 * 319.74037 * 9 8 7 39 39 H 1.08997 * 117.44777 * 160.68471 * 12 10 9 40 40 H 1.08997 * 117.40667 * 15.99276 * 12 10 9 41 41 H 1.09002 * 109.47153 * 130.23106 * 14 13 12 42 42 H 1.09001 * 109.46832 * 10.23297 * 14 13 12 43 43 H 0.96701 * 113.99881 * 180.02562 * 15 14 13 44 44 H 1.08997 * 110.22589 * 41.38189 * 16 8 7 45 45 H 1.09001 * 112.21310 * 277.81909 * 16 8 7 46 46 H 1.08001 * 119.99915 * 180.29130 * 17 6 5 47 47 H 1.09004 * 109.47089 * 299.99765 * 20 19 18 48 48 H 1.09000 * 109.47661 * 60.00383 * 20 19 18 49 49 H 1.09004 * 109.46715 * 299.99727 * 21 20 19 50 50 H 1.09003 * 109.47241 * 59.99460 * 21 20 19 51 51 H 0.97002 * 119.99706 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3747 0.0005 5 6 1.9225 3.6057 0.0067 6 6 3.3031 3.6797 0.0010 7 6 3.9838 5.0243 0.0015 8 7 4.2050 5.4617 -1.3834 9 6 5.2437 4.6305 -2.0447 10 6 5.7440 5.4964 -3.2208 11 1 5.5741 5.1343 -4.2348 12 6 6.8774 6.4890 -2.9547 13 6 5.4253 6.9495 -2.8128 14 6 4.8537 7.9596 -3.8097 15 8 4.6501 9.2129 -3.1541 16 6 4.7709 6.8735 -1.4167 17 6 4.0604 2.5232 0.0005 18 6 3.4360 1.2862 0.0000 19 8 4.1795 0.1475 -0.0010 20 6 5.6003 0.3005 -0.0020 21 6 6.2618 -1.0791 -0.0036 22 6 7.7601 -0.9179 -0.0053 23 1 8.1969 0.0699 -0.0048 24 6 8.5733 -2.0313 -0.0065 25 7 8.0414 -3.2340 -0.0066 26 14 10.4306 -1.8313 -0.0078 27 1 10.8488 -1.0829 1.2047 28 1 11.0726 -3.1704 -0.0095 29 1 10.8469 -1.0818 -1.2203 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 0.2147 2.3197 0.0006 34 1 1.3344 4.5115 0.0119 35 1 4.9420 4.9461 0.5152 36 1 3.3540 5.7502 0.5156 37 1 4.8089 3.7018 -2.4144 38 1 6.0596 4.4205 -1.3532 39 1 7.4382 6.8537 -3.8153 40 1 7.4546 6.3580 -2.0394 41 1 3.9024 7.5921 -4.1944 42 1 5.5532 8.0909 -4.6353 43 1 4.2882 9.9025 -3.7274 44 1 5.5226 6.9967 -0.6371 45 1 3.9935 7.6314 -1.3195 46 1 5.1387 2.5839 0.0009 47 1 5.9059 0.8506 -0.8920 48 1 5.9073 0.8499 0.8880 49 1 5.9562 -1.6296 0.8862 50 1 5.9548 -1.6282 -0.8938 51 1 8.6135 -4.0173 -0.0078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783733705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:49 Heat of formation + Delta-G solvation = -83.696922 kcal Electronic energy + Delta-G solvation = -30513.503679 eV Core-core repulsion = 26378.734777 eV Total energy + Delta-G solvation = -4134.768902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63001 -40.93310 -39.47770 -38.38185 -37.28350 -35.57555 -35.23576 -32.54270 -31.57503 -30.81757 -29.87772 -28.60480 -27.21811 -26.94299 -26.72634 -24.03446 -23.78764 -22.49622 -21.85869 -21.61180 -20.11729 -19.41135 -18.63580 -18.14723 -17.70925 -17.55177 -17.24141 -17.03510 -16.55202 -16.34559 -16.23983 -15.69238 -15.54881 -15.47569 -15.19598 -15.08588 -14.56218 -14.32300 -14.19914 -14.09073 -13.96298 -13.50399 -13.42326 -13.10915 -13.09374 -12.87827 -12.64968 -12.61467 -12.52795 -12.23133 -12.21471 -11.99624 -11.94387 -11.77878 -11.60174 -11.58165 -11.42871 -11.28832 -11.09371 -10.62742 -10.53993 -9.69819 -9.47245 -8.72022 -8.27230 -6.41653 0.28617 0.45716 1.39228 1.43771 1.51752 2.25997 2.41978 2.48399 2.50263 2.60407 3.06711 3.09417 3.21907 3.50859 3.69465 3.79322 3.88068 3.94559 4.04992 4.10348 4.19157 4.21173 4.23049 4.25344 4.38385 4.39560 4.42822 4.44610 4.48758 4.56832 4.57669 4.66795 4.71352 4.73904 4.76221 4.81256 4.83361 4.93569 5.04946 5.08467 5.17702 5.19047 5.27965 5.30447 5.44474 5.55630 5.64676 5.70190 5.79957 5.92301 6.04324 6.24148 6.70499 6.73518 6.95692 7.28408 8.85964 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.006962 B = 0.003179 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4020.892886 B = 8804.692956 C =12333.389241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.075 3.925 4 C -0.165 4.165 5 C -0.095 4.095 6 C -0.077 4.077 7 C 0.089 3.911 8 N -0.505 5.505 9 C 0.059 3.941 10 C -0.155 4.155 11 H 0.126 0.874 12 C -0.140 4.140 13 C -0.142 4.142 14 C 0.128 3.872 15 O -0.586 6.586 16 C 0.074 3.926 17 C -0.171 4.171 18 C 0.071 3.929 19 O -0.335 6.335 20 C 0.087 3.913 21 C 0.031 3.969 22 C -0.546 4.546 23 H 0.070 0.930 24 C 0.002 3.998 25 N -0.931 5.931 26 Si 0.977 3.023 27 H -0.263 1.263 28 H -0.281 1.281 29 H -0.262 1.262 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.041 0.959 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.398 0.602 44 H 0.046 0.954 45 H 0.099 0.901 46 H 0.125 0.875 47 H 0.056 0.944 48 H 0.056 0.944 49 H -0.005 1.005 50 H -0.004 1.004 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.095 25.459 -5.612 29.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.030 3.970 4 C -0.183 4.183 5 C -0.114 4.114 6 C -0.078 4.078 7 C -0.039 4.039 8 N -0.230 5.230 9 C -0.069 4.069 10 C -0.174 4.174 11 H 0.144 0.856 12 C -0.177 4.177 13 C -0.143 4.143 14 C 0.050 3.950 15 O -0.394 6.394 16 C -0.052 4.052 17 C -0.190 4.190 18 C 0.025 3.975 19 O -0.250 6.250 20 C 0.013 3.987 21 C -0.006 4.006 22 C -0.584 4.584 23 H 0.088 0.912 24 C -0.197 4.197 25 N -0.570 5.570 26 Si 0.799 3.201 27 H -0.188 1.188 28 H -0.207 1.207 29 H -0.187 1.187 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.182 0.818 34 H 0.174 0.826 35 H 0.059 0.941 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.138 0.862 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.248 0.752 44 H 0.065 0.935 45 H 0.117 0.883 46 H 0.142 0.858 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.014 0.986 50 H 0.014 0.986 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.349 24.505 -5.357 28.415 hybrid contribution 1.465 -0.379 0.010 1.514 sum -11.883 24.127 -5.347 27.421 Atomic orbital electron populations 1.23346 0.76452 1.05271 1.02501 1.86187 1.23499 1.26714 1.89228 1.18629 0.88992 0.86271 1.03144 1.21320 1.01001 0.90379 1.05598 1.20981 0.93284 0.97714 0.99408 1.19516 0.94051 0.93436 1.00775 1.21151 0.99395 0.93299 0.90038 1.66577 1.39741 1.01827 1.14810 1.22584 0.92955 0.96542 0.94775 1.23526 1.03724 0.90341 0.99819 0.85637 1.23335 0.90297 1.00134 1.03928 1.22489 0.98294 0.96082 0.97385 1.21345 0.99055 0.82668 0.91909 1.86412 1.87875 1.22375 1.42785 1.23113 0.98091 0.90083 0.93892 1.21028 1.00253 0.90859 1.06899 1.18829 0.89392 0.86613 1.02618 1.86179 1.20248 1.29793 1.88820 1.22809 0.75958 0.99960 0.99988 1.18927 0.94800 0.91083 0.95768 1.21341 0.90982 0.93694 1.52392 0.91151 1.26060 1.04994 0.94546 0.94058 1.70126 1.37778 0.98665 1.50462 0.85334 0.77623 0.77607 0.79488 1.18788 1.20660 1.18704 0.91124 0.91231 0.87224 0.81797 0.82590 0.94064 0.87538 0.91069 0.94290 0.86197 0.89386 0.92686 0.92068 0.75153 0.93521 0.88272 0.85751 0.92573 0.92610 0.98614 0.98581 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.49 16 2 O -0.34 -11.67 10.28 -79.61 -0.82 -12.49 16 3 C 0.08 2.52 6.70 22.57 0.15 2.67 16 4 C -0.16 -3.99 9.04 22.35 0.20 -3.79 16 5 C -0.10 -2.14 9.69 22.28 0.22 -1.92 16 6 C -0.08 -1.99 5.10 -19.86 -0.10 -2.10 16 7 C 0.09 1.90 5.00 85.56 0.43 2.33 16 8 N -0.51 -11.06 5.43 -875.69 -4.75 -15.81 16 9 C 0.06 1.42 5.29 86.45 0.46 1.88 16 10 C -0.16 -3.05 7.03 -9.90 -0.07 -3.11 16 11 H 0.13 2.25 8.14 -2.38 -0.02 2.23 16 12 C -0.14 -2.38 9.81 30.59 0.30 -2.08 16 13 C -0.14 -2.50 2.69 -51.29 -0.14 -2.64 16 14 C 0.13 1.74 7.34 71.98 0.53 2.27 16 15 O -0.59 -7.92 12.94 -148.98 -1.93 -9.84 16 16 C 0.07 1.43 6.16 85.73 0.53 1.96 16 17 C -0.17 -5.60 7.71 22.35 0.17 -5.43 16 18 C 0.07 2.75 6.70 22.57 0.15 2.90 16 19 O -0.34 -15.82 9.92 -79.57 -0.79 -16.61 16 20 C 0.09 4.11 4.68 71.98 0.34 4.44 16 21 C 0.03 1.81 5.34 29.85 0.16 1.97 16 22 C -0.55 -31.79 9.11 25.60 0.23 -31.55 16 23 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 24 C 0.00 0.12 5.46 84.66 0.46 0.58 16 25 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 26 Si 0.98 44.24 29.54 68.60 2.03 46.26 16 27 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 29 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 30 H 0.07 1.13 7.66 -2.38 -0.02 1.12 16 31 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 32 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.16 2.76 6.30 -2.91 -0.02 2.74 16 34 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.04 0.92 7.82 -2.39 -0.02 0.90 16 36 H 0.11 1.81 8.07 -2.39 -0.02 1.79 16 37 H 0.07 1.98 7.81 -2.39 -0.02 1.96 16 38 H 0.04 1.00 7.82 -2.39 -0.02 0.98 16 39 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.65 8.04 -2.39 -0.02 0.63 16 43 H 0.40 1.63 9.12 -74.06 -0.68 0.95 16 44 H 0.05 0.91 8.03 -2.39 -0.02 0.89 16 45 H 0.10 1.85 7.55 -2.39 -0.02 1.83 16 46 H 0.12 4.14 6.29 -2.91 -0.02 4.12 16 47 H 0.06 2.49 7.67 -2.38 -0.02 2.47 16 48 H 0.06 2.47 7.66 -2.39 -0.02 2.46 16 49 H 0.00 -0.29 8.14 -2.38 -0.02 -0.30 16 50 H 0.00 -0.27 8.14 -2.39 -0.02 -0.28 16 51 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -76.46 413.99 -0.59 -77.05 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.25 Total: 19.36 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 5.13 Total: -30.14 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -4.47 Total: -73.58 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -3.54 Total: -38.94 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -76.46 -0.59 -77.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783733705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.647 kcal (2) G-P(sol) polarization free energy of solvation -76.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds