Wall clock time and date at job start Wed Apr 1 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00224 * 2 1 4 4 O 1.20824 * 119.99995 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00169 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47327 * 180.02562 * 5 3 2 7 7 N 1.46908 * 109.47171 * 180.02562 * 6 5 3 8 8 C 1.46906 * 110.99857 * 169.99786 * 7 6 5 9 9 C 1.50695 * 109.47162 * 288.32176 * 8 7 6 10 10 C 1.38631 * 119.74985 * 275.05240 * 9 8 7 11 11 C 1.37624 * 120.24532 * 180.30211 * 10 9 8 12 12 C 1.40714 * 119.74802 * 359.42989 * 11 10 9 13 13 C 1.41387 * 120.24700 * 180.29666 * 12 11 10 14 14 H 1.08007 * 120.00026 * 29.43918 * 13 12 11 15 15 C 1.39944 * 120.00399 * 209.44007 * 13 12 11 16 16 N 1.30829 * 119.99609 * 10.77582 * 15 13 12 17 17 Si 1.86800 * 120.00320 * 190.78200 * 15 13 12 18 18 H 1.48500 * 109.46930 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47051 * 119.99492 * 17 15 13 20 20 H 1.48502 * 109.46877 * 239.99559 * 17 15 13 21 21 C 1.40716 * 119.50900 * 0.27167 * 12 11 10 22 22 C 1.37626 * 119.74652 * 0.02562 * 21 12 11 23 23 C 1.46895 * 110.99715 * 293.95180 * 7 6 5 24 24 C 1.53179 * 109.54391 * 286.51751 * 23 7 6 25 25 C 1.53097 * 109.15959 * 183.15609 * 24 23 7 26 26 O 1.42900 * 109.41556 * 57.60831 * 25 24 23 27 27 C 1.42901 * 114.10156 * 298.83776 * 26 25 24 28 28 C 1.53091 * 109.40994 * 61.15819 * 27 26 25 29 29 H 1.08998 * 109.47027 * 59.99672 * 1 2 3 30 30 H 1.08996 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47026 * 299.99705 * 1 2 3 32 32 H 1.09001 * 109.46842 * 59.99926 * 5 3 2 33 33 H 1.08999 * 109.47202 * 300.00282 * 5 3 2 34 34 H 1.09001 * 109.47375 * 60.00062 * 6 5 3 35 35 H 1.08999 * 109.47054 * 300.00182 * 6 5 3 36 36 H 1.08997 * 109.46860 * 168.32028 * 8 7 6 37 37 H 1.09000 * 109.47054 * 48.32197 * 8 7 6 38 38 H 1.07994 * 119.87775 * 0.02562 * 10 9 8 39 39 H 1.08007 * 120.12172 * 179.69751 * 11 10 9 40 40 H 0.96995 * 119.99687 * 180.02562 * 16 15 13 41 41 H 1.07998 * 120.12723 * 180.02562 * 21 12 11 42 42 H 1.08001 * 119.87185 * 179.97438 * 22 21 12 43 43 H 1.08994 * 109.54645 * 46.78660 * 23 7 6 44 44 H 1.09001 * 109.52205 * 303.05545 * 24 23 7 45 45 H 1.08996 * 109.52075 * 63.25066 * 24 23 7 46 46 H 1.08995 * 109.47843 * 297.62362 * 25 24 23 47 47 H 1.09010 * 109.47648 * 177.59108 * 25 24 23 48 48 H 1.09003 * 109.48005 * 301.17888 * 27 26 25 49 49 H 1.08994 * 109.48919 * 181.14691 * 27 26 25 50 50 H 1.09006 * 109.52118 * 182.48494 * 28 27 26 51 51 H 1.09000 * 109.52165 * 62.30282 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7419 0.0011 7 7 5.4673 2.8188 0.0011 8 6 5.9223 4.1952 -0.2367 9 6 5.6655 4.5680 -1.6740 10 6 6.5925 4.2313 -2.6482 11 6 6.3712 4.5722 -3.9631 12 6 5.1930 5.2545 -4.3187 13 6 4.9520 5.6043 -5.6672 14 1 5.3557 4.9962 -6.4633 15 6 4.1904 6.7385 -5.9706 16 7 3.8798 7.5894 -5.0267 17 14 3.6173 7.0374 -7.7232 18 1 4.0977 5.9360 -8.5957 19 1 2.1334 7.0852 -7.7574 20 1 4.1655 8.3289 -8.2098 21 6 4.2562 5.5855 -3.3223 22 6 4.5012 5.2401 -2.0128 23 6 6.0221 2.2898 1.2541 24 6 5.7700 3.2885 2.3880 25 6 6.4199 2.7656 3.6718 26 8 7.8170 2.5643 3.4490 27 6 8.1134 1.6051 2.4320 28 6 7.5316 2.0813 1.0984 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7804 -0.8892 33 1 3.9557 0.7808 0.8908 34 1 3.6102 3.2359 0.8911 35 1 3.6108 3.2363 -0.8889 36 1 6.9898 4.2660 -0.0281 37 1 5.3782 4.8759 0.4181 38 1 7.4938 3.7035 -2.3737 39 1 7.0971 4.3132 -4.7197 40 1 3.3516 8.3753 -5.2369 41 1 3.3484 6.1087 -3.5841 42 1 3.7837 5.4935 -1.2464 43 1 5.5452 1.3389 1.4913 44 1 6.2044 4.2534 2.1267 45 1 4.6969 3.4008 2.5425 46 1 5.9569 1.8203 3.9546 47 1 6.2804 3.4927 4.4719 48 1 7.6726 0.6446 2.6987 49 1 9.1939 1.4960 2.3389 50 1 7.7183 1.3304 0.3307 51 1 8.0015 3.0219 0.8111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784162145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:56 Heat of formation + Delta-G solvation = -114.431415 kcal Electronic energy + Delta-G solvation = -31247.140440 eV Core-core repulsion = 27111.038791 eV Total energy + Delta-G solvation = -4136.101650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.58415 -39.89838 -37.96654 -36.91000 -36.39168 -33.73146 -32.66693 -31.44590 -31.20592 -29.55237 -29.21287 -27.83482 -26.45631 -24.76999 -23.84376 -23.64130 -22.02708 -20.99784 -20.73334 -20.13617 -18.91859 -17.69489 -17.24069 -16.85495 -16.63957 -16.38165 -16.16826 -15.52868 -15.13720 -14.93001 -14.82571 -14.31907 -14.11106 -13.96582 -13.79268 -13.47806 -13.42866 -12.97083 -12.83908 -12.46622 -12.37702 -12.31749 -11.99553 -11.93112 -11.76369 -11.65360 -11.46719 -11.20535 -11.03458 -10.95785 -10.91020 -10.83396 -10.71057 -10.50672 -10.44867 -10.31030 -10.20614 -9.71640 -9.52378 -9.32353 -9.15719 -8.01900 -7.40064 -7.20149 -6.67064 -4.33163 2.18772 2.58851 2.77676 3.09359 3.11510 3.15201 3.18296 3.74553 3.97387 4.12544 4.60610 4.68175 4.76715 4.77148 4.85949 4.92701 4.96035 5.01664 5.07290 5.08474 5.15895 5.30837 5.35372 5.39962 5.47211 5.54703 5.58330 5.66355 5.76163 5.80182 5.86845 5.95852 5.97410 6.11742 6.15703 6.26385 6.32015 6.36758 6.42333 6.44380 6.97251 7.05824 7.12784 7.21882 7.35095 7.37295 7.43010 7.66639 7.71390 7.90834 8.10493 8.16410 8.35142 8.69007 8.94769 9.01495 10.27568 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.003188 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.791842 B = 8779.451221 C =11185.257152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.503 6.503 5 C -0.109 4.109 6 C 0.064 3.936 7 N -0.521 5.521 8 C 0.119 3.881 9 C -0.202 4.202 10 C -0.071 4.071 11 C -0.224 4.224 12 C 0.112 3.888 13 C -0.465 4.465 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.803 5.803 17 Si 0.908 3.092 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.275 1.275 21 C -0.156 4.156 22 C -0.097 4.097 23 C 0.077 3.923 24 C -0.193 4.193 25 C 0.067 3.933 26 O -0.385 6.385 27 C 0.062 3.938 28 C -0.147 4.147 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.038 0.962 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.029 0.971 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.278 0.722 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.090 0.910 48 H 0.048 0.952 49 H 0.094 0.906 50 H 0.082 0.918 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -13.150 14.119 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.303 3.697 4 O -0.389 6.389 5 C -0.147 4.147 6 C -0.064 4.064 7 N -0.244 5.244 8 C -0.006 4.006 9 C -0.204 4.204 10 C -0.090 4.090 11 C -0.243 4.243 12 C 0.110 3.890 13 C -0.495 4.495 14 H 0.094 0.906 15 C -0.143 4.143 16 N -0.429 5.429 17 Si 0.733 3.267 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.201 1.201 21 C -0.176 4.176 22 C -0.116 4.116 23 C -0.032 4.032 24 C -0.232 4.232 25 C -0.010 4.010 26 O -0.304 6.304 27 C -0.015 4.015 28 C -0.185 4.185 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.134 0.866 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.066 0.934 49 H 0.112 0.888 50 H 0.100 0.900 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.389 -12.810 13.851 18.871 hybrid contribution -1.152 0.710 -0.342 1.396 sum -1.541 -12.101 13.509 18.201 Atomic orbital electron populations 1.23239 0.76552 1.03458 1.02621 1.86501 1.23326 1.33807 1.84394 1.23867 0.92303 0.81223 0.72258 1.90700 1.67276 1.36239 1.44728 1.21410 0.86569 1.00746 1.06011 1.21891 0.88162 0.93117 1.03222 1.62278 1.07464 1.23286 1.31334 1.20790 0.99037 0.86059 0.94754 1.18867 0.98678 1.09887 0.92929 1.20289 0.97170 0.98458 0.93035 1.21029 0.98507 1.09992 0.94796 1.17630 0.89377 0.88627 0.93397 1.19606 1.28511 1.08529 0.92896 0.90615 1.25874 0.93965 0.95256 0.99181 1.69805 1.29633 1.09296 1.34199 0.86261 0.78993 0.78966 0.82457 1.18525 1.19866 1.20058 1.21310 1.00332 1.04120 0.91823 1.20562 0.95762 0.99266 0.96027 1.21839 0.95545 0.97401 0.88364 1.22939 1.01538 1.01701 0.97037 1.22485 0.81741 0.99994 0.96807 1.87923 1.23618 1.62046 1.56772 1.22606 1.00772 0.91031 0.87113 1.22255 0.95005 1.03451 0.97750 0.91754 0.88266 0.92074 0.86622 0.88284 0.94359 0.88266 0.91202 0.95265 0.89533 0.89160 0.91131 0.86572 0.89889 0.90338 0.90189 0.91012 0.93470 0.89191 0.93389 0.88833 0.89962 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.31 10.56 -39.24 -0.41 -4.72 16 3 C 0.46 6.26 7.96 36.00 0.29 6.54 16 4 O -0.50 -8.43 15.73 -18.75 -0.29 -8.73 16 5 C -0.11 -1.31 5.77 -27.89 -0.16 -1.47 16 6 C 0.06 0.93 3.98 -3.82 -0.02 0.92 16 7 N -0.52 -7.43 4.38 -227.86 -1.00 -8.43 16 8 C 0.12 1.98 3.71 -4.97 -0.02 1.97 16 9 C -0.20 -4.22 4.96 -104.33 -0.52 -4.74 16 10 C -0.07 -1.54 9.69 -39.66 -0.38 -1.93 16 11 C -0.22 -5.46 9.80 -38.87 -0.38 -5.84 16 12 C 0.11 2.99 5.54 -106.83 -0.59 2.40 16 13 C -0.47 -12.49 9.06 -37.75 -0.34 -12.83 16 14 H 0.08 1.96 7.87 -52.48 -0.41 1.55 16 15 C 0.07 1.88 5.25 -17.34 -0.09 1.78 16 16 N -0.80 -21.18 10.89 55.55 0.61 -20.57 16 17 Si 0.91 19.08 29.57 -169.99 -5.03 14.05 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 C -0.16 -4.08 8.66 -38.87 -0.34 -4.42 16 22 C -0.10 -2.24 8.18 -39.66 -0.32 -2.57 16 23 C 0.08 0.88 2.15 -67.53 -0.14 0.73 16 24 C -0.19 -2.13 4.71 -26.59 -0.13 -2.25 16 25 C 0.07 0.66 6.84 37.21 0.25 0.91 16 26 O -0.38 -4.42 10.76 -35.23 -0.38 -4.80 16 27 C 0.06 0.59 6.84 37.20 0.25 0.84 16 28 C -0.15 -1.58 5.49 -26.59 -0.15 -1.73 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.10 0.94 6.32 -51.93 -0.33 0.61 16 34 H 0.04 0.56 6.61 -51.93 -0.34 0.22 16 35 H 0.10 1.80 6.01 -51.93 -0.31 1.49 16 36 H 0.07 1.12 6.05 -51.93 -0.31 0.80 16 37 H 0.03 0.49 6.98 -51.93 -0.36 0.13 16 38 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 40 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 41 H 0.12 3.19 6.28 -52.49 -0.33 2.86 16 42 H 0.08 1.80 8.00 -52.49 -0.42 1.38 16 43 H 0.08 0.79 6.00 -51.93 -0.31 0.48 16 44 H 0.08 1.00 6.48 -51.93 -0.34 0.67 16 45 H 0.07 0.79 6.86 -51.93 -0.36 0.43 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.08 0.94 6.32 -51.93 -0.33 0.62 16 LS Contribution 399.83 15.07 6.03 6.03 Total: -1.00 -29.82 399.83 -10.14 -39.96 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.94 Total: 7.48 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -1.72 Total: -20.27 kcal Atomic # 7 Polarization: -28.61 SS G_CDS: -0.39 Total: -29.00 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.09 Total: -18.25 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.82 -10.14 -39.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784162145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.467 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds