Wall clock time and date at job start Wed Apr 1 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00224 * 2 1 4 4 O 1.20824 * 119.99995 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00169 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47327 * 180.02562 * 5 3 2 7 7 N 1.46908 * 109.47171 * 180.02562 * 6 5 3 8 8 C 1.46906 * 110.99857 * 169.99786 * 7 6 5 9 9 C 1.50695 * 109.47162 * 288.32176 * 8 7 6 10 10 C 1.38631 * 119.74985 * 275.05240 * 9 8 7 11 11 C 1.37624 * 120.24532 * 180.30211 * 10 9 8 12 12 C 1.40714 * 119.74802 * 359.42989 * 11 10 9 13 13 C 1.41387 * 120.24700 * 180.29666 * 12 11 10 14 14 H 1.08007 * 120.00026 * 29.43918 * 13 12 11 15 15 C 1.39944 * 120.00399 * 209.44007 * 13 12 11 16 16 N 1.30829 * 119.99609 * 10.77582 * 15 13 12 17 17 Si 1.86800 * 120.00320 * 190.78200 * 15 13 12 18 18 H 1.48500 * 109.46930 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47051 * 119.99492 * 17 15 13 20 20 H 1.48502 * 109.46877 * 239.99559 * 17 15 13 21 21 C 1.40716 * 119.50900 * 0.27167 * 12 11 10 22 22 C 1.37626 * 119.74652 * 0.02562 * 21 12 11 23 23 C 1.46895 * 110.99715 * 293.95180 * 7 6 5 24 24 C 1.53179 * 109.54391 * 286.51751 * 23 7 6 25 25 C 1.53097 * 109.15959 * 183.15609 * 24 23 7 26 26 O 1.42900 * 109.41556 * 57.60831 * 25 24 23 27 27 C 1.42901 * 114.10156 * 298.83776 * 26 25 24 28 28 C 1.53091 * 109.40994 * 61.15819 * 27 26 25 29 29 H 1.08998 * 109.47027 * 59.99672 * 1 2 3 30 30 H 1.08996 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47026 * 299.99705 * 1 2 3 32 32 H 1.09001 * 109.46842 * 59.99926 * 5 3 2 33 33 H 1.08999 * 109.47202 * 300.00282 * 5 3 2 34 34 H 1.09001 * 109.47375 * 60.00062 * 6 5 3 35 35 H 1.08999 * 109.47054 * 300.00182 * 6 5 3 36 36 H 1.08997 * 109.46860 * 168.32028 * 8 7 6 37 37 H 1.09000 * 109.47054 * 48.32197 * 8 7 6 38 38 H 1.07994 * 119.87775 * 0.02562 * 10 9 8 39 39 H 1.08007 * 120.12172 * 179.69751 * 11 10 9 40 40 H 0.96995 * 119.99687 * 180.02562 * 16 15 13 41 41 H 1.07998 * 120.12723 * 180.02562 * 21 12 11 42 42 H 1.08001 * 119.87185 * 179.97438 * 22 21 12 43 43 H 1.08994 * 109.54645 * 46.78660 * 23 7 6 44 44 H 1.09001 * 109.52205 * 303.05545 * 24 23 7 45 45 H 1.08996 * 109.52075 * 63.25066 * 24 23 7 46 46 H 1.08995 * 109.47843 * 297.62362 * 25 24 23 47 47 H 1.09010 * 109.47648 * 177.59108 * 25 24 23 48 48 H 1.09003 * 109.48005 * 301.17888 * 27 26 25 49 49 H 1.08994 * 109.48919 * 181.14691 * 27 26 25 50 50 H 1.09006 * 109.52118 * 182.48494 * 28 27 26 51 51 H 1.09000 * 109.52165 * 62.30282 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7419 0.0011 7 7 5.4673 2.8188 0.0011 8 6 5.9223 4.1952 -0.2367 9 6 5.6655 4.5680 -1.6740 10 6 6.5925 4.2313 -2.6482 11 6 6.3712 4.5722 -3.9631 12 6 5.1930 5.2545 -4.3187 13 6 4.9520 5.6043 -5.6672 14 1 5.3557 4.9962 -6.4633 15 6 4.1904 6.7385 -5.9706 16 7 3.8798 7.5894 -5.0267 17 14 3.6173 7.0374 -7.7232 18 1 4.0977 5.9360 -8.5957 19 1 2.1334 7.0852 -7.7574 20 1 4.1655 8.3289 -8.2098 21 6 4.2562 5.5855 -3.3223 22 6 4.5012 5.2401 -2.0128 23 6 6.0221 2.2898 1.2541 24 6 5.7700 3.2885 2.3880 25 6 6.4199 2.7656 3.6718 26 8 7.8170 2.5643 3.4490 27 6 8.1134 1.6051 2.4320 28 6 7.5316 2.0813 1.0984 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9564 0.7804 -0.8892 33 1 3.9557 0.7808 0.8908 34 1 3.6102 3.2359 0.8911 35 1 3.6108 3.2363 -0.8889 36 1 6.9898 4.2660 -0.0281 37 1 5.3782 4.8759 0.4181 38 1 7.4938 3.7035 -2.3737 39 1 7.0971 4.3132 -4.7197 40 1 3.3516 8.3753 -5.2369 41 1 3.3484 6.1087 -3.5841 42 1 3.7837 5.4935 -1.2464 43 1 5.5452 1.3389 1.4913 44 1 6.2044 4.2534 2.1267 45 1 4.6969 3.4008 2.5425 46 1 5.9569 1.8203 3.9546 47 1 6.2804 3.4927 4.4719 48 1 7.6726 0.6446 2.6987 49 1 9.1939 1.4960 2.3389 50 1 7.7183 1.3304 0.3307 51 1 8.0015 3.0219 0.8111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784162145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:55 Heat of formation + Delta-G solvation = -131.235603 kcal Electronic energy + Delta-G solvation = -31247.869125 eV Core-core repulsion = 27111.038791 eV Total energy + Delta-G solvation = -4136.830334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.63254 -40.87466 -39.48256 -38.16394 -37.48912 -35.56962 -33.64759 -32.93365 -31.98521 -31.20926 -30.87999 -28.85184 -27.92275 -25.70455 -25.44782 -24.45070 -23.16350 -22.75021 -21.99527 -21.57258 -20.04917 -19.18728 -18.74588 -17.83952 -17.64798 -17.32001 -17.16619 -16.96141 -16.53011 -15.95608 -15.81537 -15.64543 -15.49093 -15.26717 -15.10408 -14.81057 -14.36980 -14.26456 -14.05178 -13.97789 -13.79222 -13.46249 -13.30220 -13.14826 -12.97950 -12.89816 -12.79742 -12.68570 -12.48330 -12.30365 -12.10973 -11.97182 -11.84704 -11.77720 -11.70975 -11.58955 -11.35545 -11.20785 -11.11617 -10.98861 -10.51626 -9.34745 -9.18904 -9.06701 -8.57396 -6.33910 0.94944 1.13415 1.18270 1.36325 1.47556 1.51346 1.69982 2.21252 2.71146 3.00789 3.11201 3.65259 3.77747 3.80782 3.90627 3.95066 4.04744 4.11470 4.22663 4.27014 4.29139 4.30419 4.36800 4.40049 4.47023 4.53142 4.60681 4.63958 4.67450 4.69644 4.76014 4.83866 4.84862 4.88675 4.97446 5.03134 5.06660 5.16235 5.18665 5.25513 5.34676 5.36677 5.39554 5.49806 5.74390 5.97126 6.05624 6.13488 6.23391 6.32708 6.34102 6.43188 6.68941 6.73961 6.97627 7.06731 8.39502 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.003188 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.791842 B = 8779.451221 C =11185.257152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.543 6.543 5 C -0.101 4.101 6 C 0.069 3.931 7 N -0.521 5.521 8 C 0.128 3.872 9 C -0.183 4.183 10 C -0.070 4.070 11 C -0.236 4.236 12 C 0.079 3.921 13 C -0.504 4.504 14 H 0.073 0.927 15 C 0.030 3.970 16 N -0.839 5.839 17 Si 0.983 3.017 18 H -0.257 1.257 19 H -0.267 1.267 20 H -0.266 1.266 21 C -0.181 4.181 22 C -0.100 4.100 23 C 0.078 3.922 24 C -0.189 4.189 25 C 0.068 3.932 26 O -0.405 6.405 27 C 0.062 3.938 28 C -0.144 4.144 29 H 0.053 0.947 30 H 0.135 0.865 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.037 0.963 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.027 0.973 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.284 0.716 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.097 0.903 48 H 0.068 0.932 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 -15.574 15.667 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.307 3.693 4 O -0.433 6.433 5 C -0.138 4.138 6 C -0.060 4.060 7 N -0.244 5.244 8 C 0.002 3.998 9 C -0.185 4.185 10 C -0.088 4.088 11 C -0.255 4.255 12 C 0.077 3.923 13 C -0.534 4.534 14 H 0.091 0.909 15 C -0.183 4.183 16 N -0.466 5.466 17 Si 0.804 3.196 18 H -0.181 1.181 19 H -0.192 1.192 20 H -0.191 1.191 21 C -0.201 4.201 22 C -0.119 4.119 23 C -0.030 4.030 24 C -0.229 4.229 25 C -0.009 4.009 26 O -0.324 6.324 27 C -0.014 4.014 28 C -0.182 4.182 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.046 0.954 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.115 0.885 48 H 0.086 0.914 49 H 0.122 0.878 50 H 0.107 0.893 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.402 -15.269 15.418 21.703 hybrid contribution -1.377 1.358 -0.638 2.037 sum -0.975 -13.911 14.780 20.321 Atomic orbital electron populations 1.23532 0.75032 1.05726 1.02268 1.86492 1.24825 1.32646 1.83782 1.24171 0.92907 0.81102 0.71102 1.90693 1.68235 1.37622 1.46795 1.21361 0.85599 0.98941 1.07893 1.21731 0.88248 0.94800 1.01183 1.62157 1.07228 1.21301 1.33689 1.20639 0.99922 0.87727 0.91542 1.19304 0.96839 1.07028 0.95306 1.20602 0.98259 0.97932 0.92043 1.21244 0.98020 1.09936 0.96307 1.17939 0.90523 0.90021 0.93852 1.19839 1.30689 1.09771 0.93131 0.90894 1.26735 0.93484 0.94452 1.03596 1.69883 1.30437 1.09904 1.36378 0.85154 0.78536 0.79043 0.76912 1.18083 1.19207 1.19076 1.21217 0.99978 1.05654 0.93261 1.20708 0.96880 0.99239 0.95061 1.21981 0.96133 0.98135 0.86775 1.22885 1.01521 1.00703 0.97765 1.22555 0.81104 1.01160 0.96082 1.87909 1.24454 1.62773 1.57278 1.22714 1.01624 0.91337 0.85772 1.22238 0.94170 1.02825 0.98934 0.92777 0.84687 0.91866 0.86005 0.84827 0.94496 0.92351 0.89896 0.95437 0.86397 0.88555 0.90589 0.89007 0.89179 0.88005 0.92098 0.91030 0.91481 0.88517 0.91374 0.87755 0.89297 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -7.90 10.56 -51.36 -0.54 -8.44 16 3 C 0.46 12.08 7.96 71.23 0.57 12.65 16 4 O -0.54 -18.42 15.73 21.97 0.35 -18.08 16 5 C -0.10 -2.18 5.77 29.85 0.17 -2.01 16 6 C 0.07 1.94 3.98 86.30 0.34 2.28 16 7 N -0.52 -13.84 4.38 -874.83 -3.83 -17.68 16 8 C 0.13 4.11 3.71 85.55 0.32 4.43 16 9 C -0.18 -7.63 4.96 -19.68 -0.10 -7.73 16 10 C -0.07 -3.00 9.69 22.22 0.22 -2.79 16 11 C -0.24 -11.72 9.80 22.73 0.22 -11.50 16 12 C 0.08 4.40 5.54 -21.29 -0.12 4.28 16 13 C -0.50 -28.32 9.06 23.46 0.21 -28.11 16 14 H 0.07 3.96 7.87 -2.91 -0.02 3.94 16 15 C 0.03 1.58 5.25 85.26 0.45 2.03 16 16 N -0.84 -46.28 10.89 21.83 0.24 -46.05 16 17 Si 0.98 40.20 29.57 68.60 2.03 42.23 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 21 C -0.18 -10.00 8.66 22.73 0.20 -9.80 16 22 C -0.10 -4.78 8.18 22.22 0.18 -4.59 16 23 C 0.08 1.52 2.15 45.04 0.10 1.62 16 24 C -0.19 -3.73 4.71 30.69 0.14 -3.58 16 25 C 0.07 1.12 6.84 72.01 0.49 1.62 16 26 O -0.40 -8.09 10.76 -148.98 -1.60 -9.70 16 27 C 0.06 0.95 6.84 72.01 0.49 1.45 16 28 C -0.14 -2.64 5.49 30.68 0.17 -2.47 16 29 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 30 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.13 1.97 6.32 -2.39 -0.02 1.96 16 34 H 0.04 1.05 6.61 -2.39 -0.02 1.03 16 35 H 0.06 2.16 6.01 -2.39 -0.01 2.14 16 36 H 0.08 2.49 6.05 -2.39 -0.01 2.47 16 37 H 0.03 0.90 6.98 -2.39 -0.02 0.88 16 38 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 40 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 41 H 0.09 5.42 6.28 -2.91 -0.02 5.40 16 42 H 0.09 4.08 8.00 -2.91 -0.02 4.05 16 43 H 0.10 1.57 6.00 -2.39 -0.01 1.56 16 44 H 0.06 1.44 6.48 -2.39 -0.02 1.42 16 45 H 0.07 1.42 6.86 -2.39 -0.02 1.40 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 49 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 51 H 0.06 1.30 6.32 -2.39 -0.02 1.28 16 Total: -1.00 -68.60 399.83 2.81 -65.79 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.93 Total: 32.49 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 5.25 Total: -40.57 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -3.60 Total: -63.72 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.80 Total: -36.22 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -68.60 2.81 -65.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784162145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.446 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds