Wall clock time and date at job start Wed Apr 1 2020 04:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47534 * 2 1 4 4 O 1.42900 * 109.47046 * 240.00182 * 2 1 3 5 5 C 1.53007 * 109.47182 * 120.00356 * 2 1 3 6 6 C 1.53003 * 109.46933 * 186.76622 * 5 2 1 7 7 H 1.09001 * 109.58635 * 60.66942 * 6 5 2 8 8 C 1.53189 * 109.70510 * 300.31212 * 6 5 2 9 9 C 1.53044 * 109.31409 * 185.50865 * 8 6 5 10 10 C 1.53352 * 109.60364 * 61.37330 * 9 8 6 11 11 C 1.53193 * 109.15108 * 298.71107 * 10 9 8 12 12 N 1.46925 * 109.58512 * 180.94904 * 6 5 2 13 13 C 1.34780 * 120.63000 * 353.56428 * 12 6 5 14 14 O 1.21282 * 119.99836 * 354.62118 * 13 12 6 15 15 C 1.50698 * 119.99984 * 174.62335 * 13 12 6 16 16 C 1.50699 * 109.47231 * 179.97438 * 15 13 12 17 17 C 1.38313 * 119.96641 * 269.72123 * 16 15 13 18 18 C 1.38284 * 120.14061 * 179.76381 * 17 16 15 19 19 C 1.38119 * 120.06772 * 0.51228 * 18 17 16 20 20 C 1.38857 * 119.92889 * 359.74422 * 19 18 17 21 21 O 1.35753 * 120.07068 * 179.97438 * 20 19 18 22 22 C 1.34828 * 116.99848 * 354.47727 * 21 20 19 23 23 H 1.08000 * 120.00235 * 5.04412 * 22 21 20 24 24 C 1.38655 * 120.00035 * 185.05524 * 22 21 20 25 25 N 1.31563 * 119.99894 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00049 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47262 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47365 * 119.99832 * 26 24 22 29 29 H 1.48497 * 109.47230 * 239.99707 * 26 24 22 30 30 C 1.38084 * 119.96428 * 89.99839 * 16 15 13 31 31 H 1.08998 * 109.47501 * 59.99403 * 1 2 3 32 32 H 1.09000 * 109.47534 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46985 * 300.00105 * 1 2 3 34 34 H 0.96696 * 113.99740 * 59.99833 * 4 2 1 35 35 H 1.09002 * 109.46890 * 66.76801 * 5 2 1 36 36 H 1.08996 * 109.47033 * 306.76739 * 5 2 1 37 37 H 1.09006 * 109.49911 * 305.45567 * 8 6 5 38 38 H 1.08995 * 109.49991 * 65.52218 * 8 6 5 39 39 H 1.08996 * 109.46351 * 181.38350 * 9 8 6 40 40 H 1.08999 * 109.46071 * 301.36053 * 9 8 6 41 41 H 1.09007 * 109.68442 * 178.74868 * 10 9 8 42 42 H 1.09000 * 109.47869 * 58.55109 * 10 9 8 43 43 H 1.09002 * 109.58758 * 294.72228 * 11 10 9 44 44 H 1.09003 * 109.58728 * 174.44006 * 11 10 9 45 45 H 1.09003 * 109.46758 * 299.99815 * 15 13 12 46 46 H 1.08998 * 109.47391 * 59.99767 * 15 13 12 47 47 H 1.07999 * 119.93467 * 0.02562 * 17 16 15 48 48 H 1.08000 * 119.96889 * 180.25513 * 18 17 16 49 49 H 1.08000 * 120.03916 * 179.71907 * 19 18 17 50 50 H 0.96995 * 119.99706 * 180.02562 * 25 24 22 51 51 H 1.07999 * 120.03378 * 359.95309 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7214 1.2492 6 6 3.5605 -0.5758 1.3371 7 1 3.8231 0.4797 1.4077 8 6 4.2105 -1.1844 0.0906 9 6 5.7325 -1.1584 0.2494 10 6 6.1374 -2.0006 1.4653 11 6 5.5066 -1.3997 2.7254 12 7 4.0556 -1.2869 2.5237 13 6 3.1951 -1.8259 3.4100 14 8 2.0026 -1.6436 3.2852 15 6 3.7148 -2.6551 4.5560 16 6 2.5577 -3.1358 5.3934 17 6 2.1113 -2.3733 6.4575 18 6 1.0468 -2.8086 7.2253 19 6 0.4326 -4.0119 6.9380 20 6 0.8819 -4.7822 5.8736 21 8 0.2807 -5.9657 5.5889 22 6 -0.6702 -6.3907 6.4451 23 1 -0.9800 -5.7594 7.2648 24 6 -1.2503 -7.6383 6.2733 25 7 -0.8731 -8.4072 5.2745 26 14 -2.5672 -8.2274 7.4598 27 1 -2.8093 -7.1841 8.4884 28 1 -3.8244 -8.4890 6.7140 29 1 -2.1145 -9.4778 8.1208 30 6 1.9480 -4.3397 5.1010 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.7209 -0.2701 -1.9979 35 1 1.7789 -1.7780 1.1907 36 1 1.5812 -0.2823 2.1351 37 1 3.8748 -2.2147 -0.0286 38 1 3.9260 -0.6052 -0.7878 39 1 6.1982 -1.5685 -0.6467 40 1 6.0650 -0.1304 0.3936 41 1 7.2227 -2.0011 1.5667 42 1 5.7834 -3.0230 1.3335 43 1 5.9279 -0.4113 2.9092 44 1 5.7076 -2.0470 3.5791 45 1 4.2618 -3.5130 4.1649 46 1 4.3804 -2.0491 5.1705 47 1 2.5924 -1.4340 6.6868 48 1 0.6979 -2.2091 8.0531 49 1 -0.3958 -4.3536 7.5408 50 1 -1.2791 -9.2798 5.1542 51 1 2.2994 -4.9364 4.2722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791160114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:50 Heat of formation + Delta-G solvation = -84.365610 kcal Electronic energy + Delta-G solvation = -31270.355524 eV Core-core repulsion = 27135.557625 eV Total energy + Delta-G solvation = -4134.797898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.65429 -38.96085 -37.90374 -37.12799 -36.33009 -33.42177 -32.87980 -32.24867 -31.63294 -30.72967 -29.12432 -27.50867 -26.69271 -25.20276 -24.54875 -22.95278 -21.64810 -21.28826 -20.97038 -20.47945 -18.94830 -17.56157 -17.47152 -16.88365 -16.77356 -16.06389 -15.50366 -14.97318 -14.82103 -14.70823 -14.45676 -14.31018 -14.27886 -14.01981 -13.64295 -13.57179 -13.41771 -13.22564 -13.06192 -12.58552 -12.51882 -12.35737 -12.28799 -11.91133 -11.78572 -11.64517 -11.48999 -11.36305 -11.19950 -11.09442 -11.06983 -10.78462 -10.74095 -10.67300 -10.54666 -10.44516 -10.37908 -9.87155 -9.26451 -8.92770 -8.77330 -8.54954 -7.97415 -7.14075 -6.37886 -3.96751 2.17126 2.46818 2.80980 3.02455 3.17060 3.17778 3.23452 4.02178 4.18892 4.42005 4.59879 4.66656 4.70268 4.84087 4.89591 4.98226 5.00313 5.09938 5.14363 5.16801 5.18216 5.26785 5.31128 5.40261 5.52551 5.53755 5.56062 5.66954 5.73184 5.75495 5.80348 5.81979 5.83858 5.92101 6.00716 6.04596 6.09216 6.25081 6.25941 6.35198 6.41524 6.44429 6.72292 6.74968 6.99608 7.14758 7.35155 7.43733 7.45572 7.51866 7.54061 7.90774 8.07520 8.38980 9.08041 9.79860 10.80577 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.002623 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.047184 B =10670.841909 C =11452.305158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.094 3.906 3 H 0.048 0.952 4 O -0.560 6.560 5 C -0.107 4.107 6 C 0.153 3.847 7 H 0.062 0.938 8 C -0.128 4.128 9 C -0.122 4.122 10 C -0.138 4.138 11 C 0.108 3.892 12 N -0.617 5.617 13 C 0.518 3.482 14 O -0.513 6.513 15 C -0.095 4.095 16 C -0.031 4.031 17 C -0.196 4.196 18 C -0.075 4.075 19 C -0.231 4.231 20 C 0.155 3.845 21 O -0.181 6.181 22 C -0.389 4.389 23 H 0.092 0.908 24 C 0.038 3.962 25 N -0.864 5.864 26 Si 0.940 3.060 27 H -0.267 1.267 28 H -0.276 1.276 29 H -0.276 1.276 30 C -0.174 4.174 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.367 0.633 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.126 0.874 50 H 0.268 0.732 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.065 18.143 -9.260 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.035 3.965 3 H 0.066 0.934 4 O -0.366 6.366 5 C -0.144 4.144 6 C 0.050 3.950 7 H 0.080 0.920 8 C -0.166 4.166 9 C -0.159 4.159 10 C -0.176 4.176 11 C -0.016 4.016 12 N -0.353 5.353 13 C 0.306 3.694 14 O -0.388 6.388 15 C -0.135 4.135 16 C -0.031 4.031 17 C -0.215 4.215 18 C -0.093 4.093 19 C -0.251 4.251 20 C 0.102 3.898 21 O -0.084 6.084 22 C -0.466 4.466 23 H 0.109 0.891 24 C -0.166 4.166 25 N -0.500 5.500 26 Si 0.765 3.235 27 H -0.191 1.191 28 H -0.202 1.202 29 H -0.202 1.202 30 C -0.193 4.193 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.213 0.787 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.120 0.880 48 H 0.124 0.876 49 H 0.143 0.857 50 H 0.078 0.922 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.646 17.449 -9.127 23.403 hybrid contribution -0.863 0.082 0.192 0.888 sum 11.783 17.531 -8.936 22.935 Atomic orbital electron populations 1.22434 0.96383 1.03169 1.01967 1.22062 0.93056 0.95021 0.86405 0.93406 1.86701 1.75878 1.58176 1.15839 1.22352 0.93382 1.03184 0.95499 1.21228 0.94668 0.94717 0.84392 0.91988 1.22157 0.93633 1.02767 0.98051 1.21625 0.96858 0.99698 0.97745 1.22000 1.00272 1.00300 0.95024 1.21721 0.80039 1.01244 0.98551 1.48241 1.06306 1.56694 1.24059 1.20714 0.86459 0.79303 0.82884 1.90734 1.15817 1.58713 1.73518 1.20665 0.97900 0.99884 0.95050 1.18666 0.95534 0.93928 0.94999 1.20329 1.01408 1.00419 0.99377 1.20666 0.95201 0.95314 0.98130 1.21164 1.04733 0.97175 1.01993 1.19272 0.91012 0.87116 0.92384 1.83980 1.47412 1.30174 1.46885 1.21360 1.14887 1.01377 1.08970 0.89109 1.25272 0.98685 0.94984 0.97645 1.70056 1.41208 1.10084 1.28642 0.85660 0.79544 0.78968 0.79324 1.19140 1.20206 1.20206 1.19940 0.98592 0.98026 1.02771 0.92867 0.91557 0.91537 0.78663 0.90174 0.87296 0.91623 0.88690 0.91964 0.92306 0.90934 0.91287 0.91567 0.89497 0.88466 0.88673 0.88043 0.87566 0.85680 0.92194 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.53 37.15 0.35 -1.51 16 2 C 0.09 0.96 3.45 -26.73 -0.09 0.87 16 3 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 4 O -0.56 -5.43 9.93 -35.23 -0.35 -5.78 16 5 C -0.11 -1.41 3.00 -26.73 -0.08 -1.49 16 6 C 0.15 1.72 3.01 -67.60 -0.20 1.52 16 7 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 8 C -0.13 -1.30 4.27 -26.61 -0.11 -1.42 16 9 C -0.12 -0.98 5.89 -26.53 -0.16 -1.14 16 10 C -0.14 -1.08 6.11 -26.45 -0.16 -1.24 16 11 C 0.11 0.90 6.34 -3.71 -0.02 0.88 16 12 N -0.62 -7.25 2.97 -165.22 -0.49 -7.74 16 13 C 0.52 7.76 7.53 -10.99 -0.08 7.67 16 14 O -0.51 -9.58 11.58 5.56 0.06 -9.51 16 15 C -0.10 -1.33 4.18 -29.04 -0.12 -1.45 16 16 C -0.03 -0.57 4.37 -104.65 -0.46 -1.03 16 17 C -0.20 -3.61 9.70 -39.54 -0.38 -3.99 16 18 C -0.07 -1.46 10.04 -39.61 -0.40 -1.86 16 19 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 20 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 21 O -0.18 -5.37 9.76 0.04 0.00 -5.37 16 22 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 23 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 24 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 25 N -0.86 -26.03 13.67 55.48 0.76 -25.27 16 26 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 27 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 28 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 29 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 30 C -0.17 -3.90 9.65 -39.39 -0.38 -4.28 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.37 2.07 9.08 45.56 0.41 2.49 16 35 H 0.08 1.33 7.28 -51.93 -0.38 0.96 16 36 H 0.11 1.64 6.18 -51.93 -0.32 1.32 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.93 5.77 -51.93 -0.30 0.63 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.64 5.93 -51.93 -0.31 0.33 16 45 H 0.10 1.22 7.86 -51.93 -0.41 0.81 16 46 H 0.10 1.04 7.66 -51.93 -0.40 0.65 16 47 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 48 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 49 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 50 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -34.54 399.30 -9.07 -43.60 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.32 Total: 8.41 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -2.72 Total: -20.45 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.27 Total: -33.01 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.28 Total: -20.66 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.54 -9.07 -43.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791160114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.761 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds