Wall clock time and date at job start Wed Apr 1 2020 04:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47534 * 2 1 4 4 O 1.42900 * 109.47046 * 240.00182 * 2 1 3 5 5 C 1.53007 * 109.47182 * 120.00356 * 2 1 3 6 6 C 1.53003 * 109.46933 * 186.76622 * 5 2 1 7 7 H 1.09001 * 109.58635 * 60.66942 * 6 5 2 8 8 C 1.53189 * 109.70510 * 300.31212 * 6 5 2 9 9 C 1.53044 * 109.31409 * 185.50865 * 8 6 5 10 10 C 1.53352 * 109.60364 * 61.37330 * 9 8 6 11 11 C 1.53193 * 109.15108 * 298.71107 * 10 9 8 12 12 N 1.46925 * 109.58512 * 180.94904 * 6 5 2 13 13 C 1.34780 * 120.63000 * 353.56428 * 12 6 5 14 14 O 1.21282 * 119.99836 * 354.62118 * 13 12 6 15 15 C 1.50698 * 119.99984 * 174.62335 * 13 12 6 16 16 C 1.50699 * 109.47231 * 179.97438 * 15 13 12 17 17 C 1.38313 * 119.96641 * 269.72123 * 16 15 13 18 18 C 1.38284 * 120.14061 * 179.76381 * 17 16 15 19 19 C 1.38119 * 120.06772 * 0.51228 * 18 17 16 20 20 C 1.38857 * 119.92889 * 359.74422 * 19 18 17 21 21 O 1.35753 * 120.07068 * 179.97438 * 20 19 18 22 22 C 1.34828 * 116.99848 * 354.47727 * 21 20 19 23 23 H 1.08000 * 120.00235 * 5.04412 * 22 21 20 24 24 C 1.38655 * 120.00035 * 185.05524 * 22 21 20 25 25 N 1.31563 * 119.99894 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00049 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47262 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47365 * 119.99832 * 26 24 22 29 29 H 1.48497 * 109.47230 * 239.99707 * 26 24 22 30 30 C 1.38084 * 119.96428 * 89.99839 * 16 15 13 31 31 H 1.08998 * 109.47501 * 59.99403 * 1 2 3 32 32 H 1.09000 * 109.47534 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46985 * 300.00105 * 1 2 3 34 34 H 0.96696 * 113.99740 * 59.99833 * 4 2 1 35 35 H 1.09002 * 109.46890 * 66.76801 * 5 2 1 36 36 H 1.08996 * 109.47033 * 306.76739 * 5 2 1 37 37 H 1.09006 * 109.49911 * 305.45567 * 8 6 5 38 38 H 1.08995 * 109.49991 * 65.52218 * 8 6 5 39 39 H 1.08996 * 109.46351 * 181.38350 * 9 8 6 40 40 H 1.08999 * 109.46071 * 301.36053 * 9 8 6 41 41 H 1.09007 * 109.68442 * 178.74868 * 10 9 8 42 42 H 1.09000 * 109.47869 * 58.55109 * 10 9 8 43 43 H 1.09002 * 109.58758 * 294.72228 * 11 10 9 44 44 H 1.09003 * 109.58728 * 174.44006 * 11 10 9 45 45 H 1.09003 * 109.46758 * 299.99815 * 15 13 12 46 46 H 1.08998 * 109.47391 * 59.99767 * 15 13 12 47 47 H 1.07999 * 119.93467 * 0.02562 * 17 16 15 48 48 H 1.08000 * 119.96889 * 180.25513 * 18 17 16 49 49 H 1.08000 * 120.03916 * 179.71907 * 19 18 17 50 50 H 0.96995 * 119.99706 * 180.02562 * 25 24 22 51 51 H 1.07999 * 120.03378 * 359.95309 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7214 1.2492 6 6 3.5605 -0.5758 1.3371 7 1 3.8231 0.4797 1.4077 8 6 4.2105 -1.1844 0.0906 9 6 5.7325 -1.1584 0.2494 10 6 6.1374 -2.0006 1.4653 11 6 5.5066 -1.3997 2.7254 12 7 4.0556 -1.2869 2.5237 13 6 3.1951 -1.8259 3.4100 14 8 2.0026 -1.6436 3.2852 15 6 3.7148 -2.6551 4.5560 16 6 2.5577 -3.1358 5.3934 17 6 2.1113 -2.3733 6.4575 18 6 1.0468 -2.8086 7.2253 19 6 0.4326 -4.0119 6.9380 20 6 0.8819 -4.7822 5.8736 21 8 0.2807 -5.9657 5.5889 22 6 -0.6702 -6.3907 6.4451 23 1 -0.9800 -5.7594 7.2648 24 6 -1.2503 -7.6383 6.2733 25 7 -0.8731 -8.4072 5.2745 26 14 -2.5672 -8.2274 7.4598 27 1 -2.8093 -7.1841 8.4884 28 1 -3.8244 -8.4890 6.7140 29 1 -2.1145 -9.4778 8.1208 30 6 1.9480 -4.3397 5.1010 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.7209 -0.2701 -1.9979 35 1 1.7789 -1.7780 1.1907 36 1 1.5812 -0.2823 2.1351 37 1 3.8748 -2.2147 -0.0286 38 1 3.9260 -0.6052 -0.7878 39 1 6.1982 -1.5685 -0.6467 40 1 6.0650 -0.1304 0.3936 41 1 7.2227 -2.0011 1.5667 42 1 5.7834 -3.0230 1.3335 43 1 5.9279 -0.4113 2.9092 44 1 5.7076 -2.0470 3.5791 45 1 4.2618 -3.5130 4.1649 46 1 4.3804 -2.0491 5.1705 47 1 2.5924 -1.4340 6.6868 48 1 0.6979 -2.2091 8.0531 49 1 -0.3958 -4.3536 7.5408 50 1 -1.2791 -9.2798 5.1542 51 1 2.2994 -4.9364 4.2722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791160114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:49 Heat of formation + Delta-G solvation = -107.560207 kcal Electronic energy + Delta-G solvation = -31271.361317 eV Core-core repulsion = 27135.557625 eV Total energy + Delta-G solvation = -4135.803692 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.70790 -40.69688 -39.01405 -38.20170 -37.82815 -34.52344 -34.23769 -33.75043 -32.98634 -31.56424 -30.86914 -28.73711 -27.80658 -27.23396 -25.40550 -23.92365 -23.25488 -22.66292 -21.85077 -21.67482 -20.04319 -19.40872 -18.72872 -18.31310 -17.75036 -17.06474 -16.83557 -16.55423 -16.27038 -16.05157 -15.57001 -15.52747 -15.43125 -15.17649 -14.98193 -14.76850 -14.51914 -14.41431 -14.23020 -14.01965 -13.90481 -13.58958 -13.46888 -13.23828 -12.97848 -12.82414 -12.72397 -12.52054 -12.46291 -12.33493 -12.24259 -12.17238 -12.09014 -11.91077 -11.80326 -11.52116 -11.26743 -11.20331 -10.82439 -10.65060 -10.09627 -9.60660 -9.48884 -8.98006 -8.47978 -6.16790 0.51981 0.75537 1.32755 1.41885 1.51937 1.68424 2.06292 2.16803 2.82776 3.15497 3.40365 3.44898 3.58739 3.80543 3.90756 4.01935 4.03563 4.08595 4.10834 4.17412 4.22664 4.30280 4.31338 4.37897 4.40563 4.53961 4.59070 4.60374 4.63258 4.72716 4.73034 4.81903 4.87814 4.98898 5.04167 5.06568 5.12161 5.13720 5.16926 5.22848 5.29919 5.32906 5.34243 5.44833 5.57391 5.64839 5.72457 5.75267 5.78776 6.02172 6.22832 6.48742 6.96394 6.96458 7.29719 7.78632 8.75991 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.002623 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.047184 B =10670.841909 C =11452.305158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.101 3.899 3 H 0.076 0.924 4 O -0.573 6.573 5 C -0.101 4.101 6 C 0.151 3.849 7 H 0.086 0.914 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.137 4.137 11 C 0.099 3.901 12 N -0.611 5.611 13 C 0.511 3.489 14 O -0.563 6.563 15 C -0.092 4.092 16 C -0.022 4.022 17 C -0.178 4.178 18 C -0.072 4.072 19 C -0.247 4.247 20 C 0.113 3.887 21 O -0.237 6.237 22 C -0.414 4.414 23 H 0.101 0.899 24 C -0.025 4.025 25 N -0.923 5.923 26 Si 1.021 2.979 27 H -0.251 1.251 28 H -0.269 1.269 29 H -0.265 1.265 30 C -0.194 4.194 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.387 0.613 35 H 0.030 0.970 36 H 0.087 0.913 37 H 0.030 0.970 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.141 0.859 47 H 0.148 0.852 48 H 0.146 0.854 49 H 0.118 0.882 50 H 0.272 0.728 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.542 21.882 -8.382 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.042 3.958 3 H 0.094 0.906 4 O -0.381 6.381 5 C -0.138 4.138 6 C 0.048 3.952 7 H 0.104 0.896 8 C -0.158 4.158 9 C -0.156 4.156 10 C -0.175 4.175 11 C -0.023 4.023 12 N -0.345 5.345 13 C 0.300 3.700 14 O -0.442 6.442 15 C -0.132 4.132 16 C -0.022 4.022 17 C -0.197 4.197 18 C -0.090 4.090 19 C -0.266 4.266 20 C 0.063 3.937 21 O -0.144 6.144 22 C -0.490 4.490 23 H 0.118 0.882 24 C -0.222 4.222 25 N -0.561 5.561 26 Si 0.840 3.160 27 H -0.174 1.174 28 H -0.194 1.194 29 H -0.190 1.190 30 C -0.214 4.214 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.236 0.764 35 H 0.049 0.951 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.120 0.880 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.119 0.881 45 H 0.129 0.871 46 H 0.159 0.841 47 H 0.166 0.834 48 H 0.164 0.836 49 H 0.135 0.865 50 H 0.081 0.919 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.195 21.250 -8.270 27.402 hybrid contribution -1.423 -0.809 -0.176 1.646 sum 13.772 20.441 -8.446 26.055 Atomic orbital electron populations 1.22435 0.96800 1.01551 1.03061 1.21922 0.92658 0.95705 0.85523 0.90575 1.86654 1.75942 1.58843 1.16687 1.22102 0.95207 1.00132 0.96375 1.21333 0.93210 0.95941 0.84697 0.89604 1.22058 0.95433 1.00548 0.97764 1.21625 0.94750 1.00991 0.98240 1.22011 1.01821 0.98971 0.94671 1.22083 0.77601 1.03230 0.99347 1.48313 1.07642 1.55351 1.23168 1.20869 0.86144 0.79369 0.83567 1.90750 1.17873 1.60669 1.74891 1.20758 0.96520 1.00993 0.94889 1.19165 0.95901 0.91963 0.95188 1.20944 0.99960 1.01199 0.97555 1.21133 0.94806 0.93968 0.99063 1.21282 1.05185 0.98605 1.01510 1.19854 0.92477 0.86859 0.94476 1.83939 1.49158 1.32618 1.48652 1.21875 1.15377 1.02241 1.09477 0.88204 1.26640 1.01228 0.94666 0.99687 1.70208 1.43663 1.10904 1.31369 0.84502 0.75872 0.78769 0.76849 1.17442 1.19379 1.19034 1.20175 0.98807 0.99868 1.02513 0.90156 0.94508 0.92026 0.76368 0.95073 0.89489 0.95134 0.88003 0.91389 0.90305 0.88219 0.93408 0.88807 0.88126 0.87130 0.84112 0.83441 0.83593 0.86469 0.91874 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.77 9.53 71.98 0.69 -3.08 16 2 C 0.10 2.01 3.45 30.59 0.11 2.12 16 3 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 4 O -0.57 -10.72 9.93 -148.98 -1.48 -12.20 16 5 C -0.10 -2.74 3.00 30.60 0.09 -2.65 16 6 C 0.15 3.19 3.01 44.97 0.14 3.32 16 7 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 8 C -0.12 -2.30 4.27 30.67 0.13 -2.17 16 9 C -0.12 -1.56 5.89 30.73 0.18 -1.38 16 10 C -0.14 -1.72 6.11 30.78 0.19 -1.53 16 11 C 0.10 1.27 6.34 86.36 0.55 1.82 16 12 N -0.61 -13.17 2.97 -795.02 -2.36 -15.53 16 13 C 0.51 14.84 7.53 87.66 0.66 15.50 16 14 O -0.56 -21.63 11.58 -3.04 -0.04 -21.67 16 15 C -0.09 -2.36 4.18 29.10 0.12 -2.23 16 16 C -0.02 -0.79 4.37 -19.88 -0.09 -0.87 16 17 C -0.18 -5.99 9.70 22.30 0.22 -5.78 16 18 C -0.07 -2.67 10.04 22.25 0.22 -2.45 16 19 C -0.25 -11.65 9.17 22.39 0.21 -11.45 16 20 C 0.11 6.15 6.65 22.58 0.15 6.30 16 21 O -0.24 -15.27 9.76 -22.76 -0.22 -15.50 16 22 C -0.41 -25.48 9.49 67.92 0.64 -24.84 16 23 H 0.10 5.68 5.20 -2.91 -0.02 5.66 16 24 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 25 N -0.92 -59.12 13.67 21.61 0.30 -58.82 16 26 Si 1.02 44.80 29.55 68.60 2.03 46.83 16 27 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 30 C -0.19 -9.18 9.65 22.39 0.22 -8.96 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.39 3.73 9.08 -74.06 -0.67 3.06 16 35 H 0.03 1.13 7.28 -2.39 -0.02 1.11 16 36 H 0.09 2.75 6.18 -2.39 -0.01 2.73 16 37 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.10 1.81 5.77 -2.39 -0.01 1.79 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.10 1.03 5.93 -2.39 -0.01 1.02 16 45 H 0.11 2.56 7.86 -2.39 -0.02 2.54 16 46 H 0.14 2.33 7.66 -2.39 -0.02 2.31 16 47 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 48 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 49 H 0.12 5.59 5.64 -2.91 -0.02 5.58 16 50 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 51 H 0.10 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -85.82 399.30 3.37 -82.45 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.26 Total: 33.80 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 4.88 Total: -39.36 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -2.07 Total: -74.36 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -1.74 Total: -49.36 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -85.82 3.37 -82.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791160114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.111 kcal (2) G-P(sol) polarization free energy of solvation -85.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds