Wall clock time and date at job start Wed Apr 1 2020 04:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47423 * 2 1 4 4 C 1.53002 * 109.47148 * 119.99998 * 2 1 3 5 5 N 1.46902 * 109.47397 * 184.99740 * 4 2 1 6 6 C 1.47025 * 110.99322 * 46.32117 * 5 4 2 7 7 C 1.53099 * 109.25092 * 182.34807 * 6 5 4 8 8 O 1.43013 * 109.29681 * 303.21913 * 7 6 5 9 9 C 1.43010 * 113.73816 * 58.64490 * 8 7 6 10 10 C 1.47011 * 110.99879 * 169.99701 * 5 4 2 11 11 O 1.45201 * 109.47190 * 239.99508 * 2 1 3 12 12 C 1.34230 * 116.99535 * 90.00468 * 11 2 1 13 13 O 1.20829 * 120.00141 * 359.97438 * 12 11 2 14 14 C 1.50707 * 120.00003 * 179.97438 * 12 11 2 15 15 C 1.52996 * 109.46969 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.47358 * 305.36726 * 15 14 12 17 17 C 1.50691 * 109.47244 * 65.37213 * 15 14 12 18 18 H 1.07997 * 120.00607 * 34.61499 * 17 15 14 19 19 C 1.37883 * 120.00031 * 214.62089 * 17 15 14 20 20 N 1.31516 * 120.00175 * 186.44770 * 19 17 15 21 21 Si 1.86804 * 119.99869 * 6.44197 * 19 17 15 22 22 H 1.48491 * 109.46987 * 85.01049 * 21 19 17 23 23 H 1.48498 * 109.46953 * 205.01038 * 21 19 17 24 24 H 1.48500 * 109.46876 * 325.00698 * 21 19 17 25 25 C 1.50700 * 109.46813 * 185.36856 * 15 14 12 26 26 C 1.38235 * 120.00079 * 296.36189 * 25 15 14 27 27 C 1.38233 * 120.00014 * 179.78919 * 26 25 15 28 28 C 1.38236 * 120.00523 * 0.43834 * 27 26 25 29 29 C 1.38244 * 119.99354 * 359.81425 * 28 27 26 30 30 C 1.38234 * 120.00217 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47011 * 300.00164 * 1 2 3 32 32 H 1.08997 * 109.47166 * 60.00085 * 1 2 3 33 33 H 1.08997 * 109.47423 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47079 * 64.99757 * 4 2 1 35 35 H 1.09006 * 109.47117 * 304.99882 * 4 2 1 36 36 H 1.08995 * 109.47327 * 62.43603 * 6 5 4 37 37 H 1.09003 * 109.54404 * 302.30597 * 6 5 4 38 38 H 1.08997 * 109.50567 * 183.25533 * 7 6 5 39 39 H 1.09005 * 109.50277 * 63.17428 * 7 6 5 40 40 H 1.09002 * 109.50434 * 61.26842 * 9 8 7 41 41 H 1.09004 * 109.50750 * 181.35415 * 9 8 7 42 42 H 1.09005 * 109.50849 * 57.67522 * 10 5 4 43 43 H 1.09002 * 109.54395 * 297.56560 * 10 5 4 44 44 H 1.08997 * 109.47098 * 300.00253 * 14 12 11 45 45 H 1.09003 * 109.46724 * 59.99801 * 14 12 11 46 46 H 0.96999 * 119.99952 * 179.97438 * 20 19 17 47 47 H 1.07996 * 119.99964 * 359.97438 * 26 25 15 48 48 H 1.08008 * 120.00428 * 180.27507 * 27 26 25 49 49 H 1.07997 * 120.00521 * 179.83411 * 28 27 26 50 50 H 1.07992 * 119.99709 * 179.97438 * 29 28 27 51 51 H 1.07993 * 120.00050 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.6177 1.3112 6 6 3.9464 0.7591 1.0459 7 6 5.4764 0.8097 1.0622 8 8 5.9522 0.3199 2.3187 9 6 5.5404 -1.0188 2.6079 10 6 4.0110 -1.0878 2.6085 11 8 2.0140 -0.6846 -1.1855 12 6 2.2172 0.0639 -2.2810 13 8 1.9974 1.2517 -2.2505 14 6 2.7194 -0.5771 -3.5491 15 6 2.8634 0.4889 -4.6371 16 1 1.9171 1.0167 -4.7561 17 6 3.9385 1.4680 -4.2419 18 1 4.8045 1.1272 -3.6940 19 6 3.8165 2.7993 -4.5796 20 7 4.8094 3.6301 -4.3481 21 14 2.2410 3.4228 -5.3662 22 1 1.2537 3.7484 -4.3059 23 1 2.5338 4.6423 -6.1614 24 1 1.6834 2.3733 -6.2565 25 6 3.2383 -0.1701 -5.9395 26 6 4.4428 -0.8386 -6.0543 27 6 4.7847 -1.4467 -7.2476 28 6 3.9263 -1.3788 -8.3290 29 6 2.7240 -0.7058 -8.2158 30 6 2.3801 -0.1013 -7.0211 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.7516 -1.7715 1.2056 35 1 1.6054 -0.2617 2.1370 36 1 3.5521 1.4222 1.8159 37 1 3.5819 1.0775 0.0692 38 1 5.8080 1.8387 0.9235 39 1 5.8696 0.1890 0.2570 40 1 5.9349 -1.6932 1.8478 41 1 5.9190 -1.3126 3.5870 42 1 3.6932 -2.1176 2.7720 43 1 3.6184 -0.4550 3.4045 44 1 3.6885 -1.0401 -3.3631 45 1 2.0105 -1.3374 -3.8773 46 1 4.7237 4.5665 -4.5860 47 1 5.1153 -0.8882 -5.2108 48 1 5.7238 -1.9729 -7.3361 49 1 4.1946 -1.8516 -9.2621 50 1 2.0536 -0.6523 -9.0607 51 1 1.4411 0.4248 -6.9328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795983239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:33 Heat of formation + Delta-G solvation = -99.485129 kcal Electronic energy + Delta-G solvation = -31853.700867 eV Core-core repulsion = 27718.247337 eV Total energy + Delta-G solvation = -4135.453530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.22617 -39.34963 -38.57756 -36.76645 -35.34686 -34.13522 -32.21059 -31.69400 -31.14667 -30.22179 -29.10865 -28.07044 -26.23585 -24.71988 -24.07010 -22.94452 -21.98136 -21.50524 -20.70665 -19.87333 -19.18905 -17.22946 -17.03825 -16.76709 -16.21016 -16.01583 -15.68245 -15.35058 -15.11021 -14.87938 -14.80724 -14.50646 -14.28373 -14.03289 -13.89012 -13.23473 -13.11357 -12.92857 -12.73028 -12.52910 -12.45745 -12.34077 -12.19837 -12.04003 -11.82110 -11.75279 -11.55454 -11.39368 -11.13081 -10.82848 -10.68927 -10.58004 -10.41849 -10.37120 -10.12438 -9.95256 -9.69557 -9.65730 -9.51618 -9.18868 -8.46944 -8.42666 -8.21894 -7.85358 -6.05018 -4.02777 2.08669 2.12555 3.06996 3.21887 3.38290 3.42601 3.46714 3.64026 3.88989 4.48570 4.54044 4.60577 4.83522 4.92151 5.07795 5.09942 5.14884 5.17524 5.18229 5.27803 5.34496 5.42370 5.50901 5.51267 5.54775 5.59346 5.63351 5.67612 5.75250 5.84280 5.88452 5.90115 5.94137 5.99653 6.03408 6.06910 6.11040 6.23204 6.29757 6.52384 6.66422 6.79351 6.86217 6.87459 6.94023 7.10654 7.13477 7.14905 7.25930 7.52320 7.67249 7.78175 8.45456 8.62748 8.94200 9.59568 11.07376 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.003328 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.816629 B = 8410.205990 C = 8563.398442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.078 3.922 3 H 0.089 0.911 4 C 0.062 3.938 5 N -0.529 5.529 6 C 0.010 3.990 7 C 0.066 3.934 8 O -0.388 6.388 9 C 0.064 3.936 10 C 0.019 3.981 11 O -0.352 6.352 12 C 0.459 3.541 13 O -0.477 6.477 14 C -0.090 4.090 15 C 0.053 3.947 16 H 0.050 0.950 17 C -0.493 4.493 18 H 0.073 0.927 19 C 0.087 3.913 20 N -0.895 5.895 21 Si 0.870 3.130 22 H -0.273 1.273 23 H -0.295 1.295 24 H -0.260 1.260 25 C -0.039 4.039 26 C -0.100 4.100 27 C -0.127 4.127 28 C -0.148 4.148 29 C -0.126 4.126 30 C -0.135 4.135 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.040 0.960 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.263 0.737 47 H 0.120 0.880 48 H 0.111 0.889 49 H 0.108 0.892 50 H 0.108 0.892 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 -11.752 8.981 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.023 3.977 3 H 0.107 0.893 4 C -0.066 4.066 5 N -0.255 5.255 6 C -0.118 4.118 7 C -0.011 4.011 8 O -0.307 6.307 9 C -0.014 4.014 10 C -0.110 4.110 11 O -0.270 6.270 12 C 0.301 3.699 13 O -0.361 6.361 14 C -0.128 4.128 15 C 0.034 3.966 16 H 0.068 0.932 17 C -0.530 4.530 18 H 0.091 0.909 19 C -0.115 4.115 20 N -0.532 5.532 21 Si 0.698 3.302 22 H -0.199 1.199 23 H -0.222 1.222 24 H -0.185 1.185 25 C -0.039 4.039 26 C -0.118 4.118 27 C -0.145 4.145 28 C -0.166 4.166 29 C -0.145 4.145 30 C -0.153 4.153 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.138 0.862 48 H 0.129 0.871 49 H 0.126 0.874 50 H 0.126 0.874 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.599 -11.351 8.773 15.066 hybrid contribution -1.355 1.099 -0.016 1.745 sum -5.954 -10.252 8.757 14.739 Atomic orbital electron populations 1.22149 0.94503 1.02794 1.03056 1.22686 0.93863 0.97847 0.83344 0.89286 1.22268 0.87274 1.01973 0.95096 1.62212 1.10237 1.22485 1.30540 1.22950 0.97274 0.88798 1.02729 1.22680 0.92094 1.00613 0.85733 1.87967 1.74660 1.29510 1.38561 1.22620 0.92648 0.84685 1.01410 1.22787 0.96905 1.01153 0.90108 1.86629 1.77750 1.42512 1.20116 1.23886 0.74719 0.86415 0.84928 1.90684 1.45790 1.16100 1.83526 1.21461 1.01898 0.99434 0.89965 1.18185 0.98984 0.92587 0.86835 0.93235 1.20595 1.05123 0.91205 1.36106 0.90864 1.24879 0.95613 0.96726 0.94321 1.69891 1.31057 1.04390 1.47879 0.86970 0.85149 0.78345 0.79707 1.19877 1.22164 1.18486 1.20624 0.93319 0.92772 0.97234 1.20968 0.96378 0.97042 0.97407 1.21056 0.99024 1.00663 0.93741 1.20876 0.95413 1.02012 0.98304 1.20962 0.97031 0.99174 0.97291 1.21140 0.99946 1.00701 0.93557 0.91318 0.91464 0.91638 0.89403 0.93154 0.94182 0.88406 0.88030 0.91712 0.92160 0.88760 0.89722 0.94215 0.88589 0.90307 0.92760 0.86169 0.87119 0.87389 0.87355 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.55 37.16 0.35 -1.64 16 2 C 0.08 1.11 1.95 -26.73 -0.05 1.06 16 3 H 0.09 1.45 4.96 -51.93 -0.26 1.20 16 4 C 0.06 0.72 4.95 -3.82 -0.02 0.70 16 5 N -0.53 -6.94 4.83 -234.29 -1.13 -8.07 16 6 C 0.01 0.15 4.94 -3.70 -0.02 0.13 16 7 C 0.07 0.95 7.01 37.21 0.26 1.21 16 8 O -0.39 -5.46 10.83 -35.23 -0.38 -5.84 16 9 C 0.06 0.70 7.01 37.21 0.26 0.96 16 10 C 0.02 0.20 5.63 -3.71 -0.02 0.18 16 11 O -0.35 -5.89 9.83 -39.26 -0.39 -6.28 16 12 C 0.46 8.99 7.68 36.01 0.28 9.26 16 13 O -0.48 -10.98 14.22 -18.75 -0.27 -11.24 16 14 C -0.09 -1.68 5.05 -27.88 -0.14 -1.82 16 15 C 0.05 1.18 1.28 -92.93 -0.12 1.06 16 16 H 0.05 1.16 4.79 -51.93 -0.25 0.91 16 17 C -0.49 -13.06 6.94 -34.44 -0.24 -13.30 16 18 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 19 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 20 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 21 Si 0.87 22.09 27.04 -169.99 -4.60 17.49 16 22 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 24 H -0.26 -6.12 5.15 56.52 0.29 -5.83 16 25 C -0.04 -0.80 4.77 -104.62 -0.50 -1.30 16 26 C -0.10 -1.92 8.87 -39.58 -0.35 -2.27 16 27 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 28 C -0.15 -2.38 10.05 -39.58 -0.40 -2.78 16 29 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 30 C -0.14 -2.62 9.13 -39.58 -0.36 -2.98 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.69 5.95 -51.93 -0.31 1.38 16 38 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 1.72 7.80 -51.93 -0.41 1.32 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.12 2.28 7.77 -52.49 -0.41 1.87 16 48 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 49 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 50 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 51 H 0.11 2.11 6.95 -52.49 -0.36 1.75 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -32.00 404.98 -10.27 -42.27 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -8.42 Total: 6.10 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.96 Total: -14.20 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: -0.36 Total: -34.40 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.03 Total: -23.36 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.60 Total: 17.49 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.00 -10.27 -42.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795983239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.217 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds