Wall clock time and date at job start Wed Apr 1 2020 04:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47423 * 2 1 4 4 C 1.53002 * 109.47148 * 119.99998 * 2 1 3 5 5 N 1.46902 * 109.47397 * 184.99740 * 4 2 1 6 6 C 1.47025 * 110.99322 * 46.32117 * 5 4 2 7 7 C 1.53099 * 109.25092 * 182.34807 * 6 5 4 8 8 O 1.43013 * 109.29681 * 303.21913 * 7 6 5 9 9 C 1.43010 * 113.73816 * 58.64490 * 8 7 6 10 10 C 1.47011 * 110.99879 * 169.99701 * 5 4 2 11 11 O 1.45201 * 109.47190 * 239.99508 * 2 1 3 12 12 C 1.34230 * 116.99535 * 90.00468 * 11 2 1 13 13 O 1.20829 * 120.00141 * 359.97438 * 12 11 2 14 14 C 1.50707 * 120.00003 * 179.97438 * 12 11 2 15 15 C 1.52996 * 109.46969 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.47358 * 305.36726 * 15 14 12 17 17 C 1.50691 * 109.47244 * 65.37213 * 15 14 12 18 18 H 1.07997 * 120.00607 * 34.61499 * 17 15 14 19 19 C 1.37883 * 120.00031 * 214.62089 * 17 15 14 20 20 N 1.31516 * 120.00175 * 186.44770 * 19 17 15 21 21 Si 1.86804 * 119.99869 * 6.44197 * 19 17 15 22 22 H 1.48491 * 109.46987 * 85.01049 * 21 19 17 23 23 H 1.48498 * 109.46953 * 205.01038 * 21 19 17 24 24 H 1.48500 * 109.46876 * 325.00698 * 21 19 17 25 25 C 1.50700 * 109.46813 * 185.36856 * 15 14 12 26 26 C 1.38235 * 120.00079 * 296.36189 * 25 15 14 27 27 C 1.38233 * 120.00014 * 179.78919 * 26 25 15 28 28 C 1.38236 * 120.00523 * 0.43834 * 27 26 25 29 29 C 1.38244 * 119.99354 * 359.81425 * 28 27 26 30 30 C 1.38234 * 120.00217 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47011 * 300.00164 * 1 2 3 32 32 H 1.08997 * 109.47166 * 60.00085 * 1 2 3 33 33 H 1.08997 * 109.47423 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47079 * 64.99757 * 4 2 1 35 35 H 1.09006 * 109.47117 * 304.99882 * 4 2 1 36 36 H 1.08995 * 109.47327 * 62.43603 * 6 5 4 37 37 H 1.09003 * 109.54404 * 302.30597 * 6 5 4 38 38 H 1.08997 * 109.50567 * 183.25533 * 7 6 5 39 39 H 1.09005 * 109.50277 * 63.17428 * 7 6 5 40 40 H 1.09002 * 109.50434 * 61.26842 * 9 8 7 41 41 H 1.09004 * 109.50750 * 181.35415 * 9 8 7 42 42 H 1.09005 * 109.50849 * 57.67522 * 10 5 4 43 43 H 1.09002 * 109.54395 * 297.56560 * 10 5 4 44 44 H 1.08997 * 109.47098 * 300.00253 * 14 12 11 45 45 H 1.09003 * 109.46724 * 59.99801 * 14 12 11 46 46 H 0.96999 * 119.99952 * 179.97438 * 20 19 17 47 47 H 1.07996 * 119.99964 * 359.97438 * 26 25 15 48 48 H 1.08008 * 120.00428 * 180.27507 * 27 26 25 49 49 H 1.07997 * 120.00521 * 179.83411 * 28 27 26 50 50 H 1.07992 * 119.99709 * 179.97438 * 29 28 27 51 51 H 1.07993 * 120.00050 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.6177 1.3112 6 6 3.9464 0.7591 1.0459 7 6 5.4764 0.8097 1.0622 8 8 5.9522 0.3199 2.3187 9 6 5.5404 -1.0188 2.6079 10 6 4.0110 -1.0878 2.6085 11 8 2.0140 -0.6846 -1.1855 12 6 2.2172 0.0639 -2.2810 13 8 1.9974 1.2517 -2.2505 14 6 2.7194 -0.5771 -3.5491 15 6 2.8634 0.4889 -4.6371 16 1 1.9171 1.0167 -4.7561 17 6 3.9385 1.4680 -4.2419 18 1 4.8045 1.1272 -3.6940 19 6 3.8165 2.7993 -4.5796 20 7 4.8094 3.6301 -4.3481 21 14 2.2410 3.4228 -5.3662 22 1 1.2537 3.7484 -4.3059 23 1 2.5338 4.6423 -6.1614 24 1 1.6834 2.3733 -6.2565 25 6 3.2383 -0.1701 -5.9395 26 6 4.4428 -0.8386 -6.0543 27 6 4.7847 -1.4467 -7.2476 28 6 3.9263 -1.3788 -8.3290 29 6 2.7240 -0.7058 -8.2158 30 6 2.3801 -0.1013 -7.0211 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.7516 -1.7715 1.2056 35 1 1.6054 -0.2617 2.1370 36 1 3.5521 1.4222 1.8159 37 1 3.5819 1.0775 0.0692 38 1 5.8080 1.8387 0.9235 39 1 5.8696 0.1890 0.2570 40 1 5.9349 -1.6932 1.8478 41 1 5.9190 -1.3126 3.5870 42 1 3.6932 -2.1176 2.7720 43 1 3.6184 -0.4550 3.4045 44 1 3.6885 -1.0401 -3.3631 45 1 2.0105 -1.3374 -3.8773 46 1 4.7237 4.5665 -4.5860 47 1 5.1153 -0.8882 -5.2108 48 1 5.7238 -1.9729 -7.3361 49 1 4.1946 -1.8516 -9.2621 50 1 2.0536 -0.6523 -9.0607 51 1 1.4411 0.4248 -6.9328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795983239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:32 Heat of formation + Delta-G solvation = -119.188749 kcal Electronic energy + Delta-G solvation = -31854.555280 eV Core-core repulsion = 27718.247337 eV Total energy + Delta-G solvation = -4136.307943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60376 -40.53226 -39.98758 -38.08304 -36.59064 -35.86048 -33.81526 -33.22197 -32.18839 -31.60469 -30.55420 -29.07473 -28.09164 -25.78302 -25.13718 -24.61219 -23.37233 -22.76548 -21.86630 -21.11341 -20.77738 -19.05918 -18.70540 -17.85416 -17.51738 -17.26223 -17.00177 -16.77185 -16.38171 -16.07990 -15.94744 -15.85887 -15.73831 -15.43185 -15.19975 -14.78669 -14.50316 -14.28420 -14.21589 -13.98480 -13.83535 -13.53841 -13.40572 -13.27064 -13.14425 -12.98154 -12.91986 -12.75094 -12.58938 -12.40897 -12.13577 -11.93397 -11.83629 -11.75221 -11.54049 -11.46748 -11.43520 -11.20511 -11.03951 -10.71651 -10.60781 -9.61478 -9.42326 -9.32087 -8.24237 -6.21604 0.68646 0.72565 1.30642 1.37245 1.39623 1.51342 1.87456 2.39081 2.64668 2.87317 3.06534 3.23347 3.55467 3.81605 3.89414 3.96922 4.01995 4.06038 4.09441 4.10411 4.20278 4.26615 4.29754 4.31673 4.39697 4.45721 4.48391 4.56315 4.58565 4.64302 4.67993 4.69903 4.72230 4.83793 4.85130 4.85492 4.87470 4.96594 5.04432 5.12432 5.15836 5.35621 5.39459 5.63055 5.66037 5.77351 5.81620 5.82324 5.94773 6.01505 6.10309 6.31612 6.35863 6.77466 7.09875 7.42432 8.92051 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.003328 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.816629 B = 8410.205990 C = 8563.398442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 H 0.061 0.939 4 C 0.067 3.933 5 N -0.546 5.546 6 C 0.020 3.980 7 C 0.069 3.931 8 O -0.401 6.401 9 C 0.055 3.945 10 C 0.021 3.979 11 O -0.346 6.346 12 C 0.462 3.538 13 O -0.520 6.520 14 C -0.087 4.087 15 C 0.056 3.944 16 H 0.037 0.963 17 C -0.471 4.471 18 H 0.036 0.964 19 C 0.029 3.971 20 N -0.947 5.947 21 Si 0.918 3.082 22 H -0.285 1.285 23 H -0.298 1.298 24 H -0.230 1.230 25 C -0.063 4.063 26 C -0.118 4.118 27 C -0.125 4.125 28 C -0.139 4.139 29 C -0.124 4.124 30 C -0.152 4.152 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.047 0.953 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.259 0.741 47 H 0.109 0.891 48 H 0.139 0.861 49 H 0.147 0.853 50 H 0.141 0.859 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 -14.981 8.488 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.079 0.921 4 C -0.060 4.060 5 N -0.271 5.271 6 C -0.108 4.108 7 C -0.008 4.008 8 O -0.320 6.320 9 C -0.021 4.021 10 C -0.106 4.106 11 O -0.264 6.264 12 C 0.306 3.694 13 O -0.408 6.408 14 C -0.125 4.125 15 C 0.037 3.963 16 H 0.055 0.945 17 C -0.508 4.508 18 H 0.055 0.945 19 C -0.168 4.168 20 N -0.588 5.588 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.225 1.225 24 H -0.153 1.153 25 C -0.064 4.064 26 C -0.136 4.136 27 C -0.143 4.143 28 C -0.157 4.157 29 C -0.142 4.142 30 C -0.170 4.170 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.130 0.870 43 H 0.065 0.935 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.068 0.932 47 H 0.127 0.873 48 H 0.156 0.844 49 H 0.164 0.836 50 H 0.159 0.841 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.126 -14.644 8.283 17.905 hybrid contribution -0.833 1.916 0.202 2.099 sum -6.959 -12.728 8.485 16.805 Atomic orbital electron populations 1.22122 0.92424 1.04148 1.03139 1.23007 0.95570 0.96738 0.83243 0.92099 1.22324 0.86497 1.02903 0.94263 1.62222 1.11300 1.21068 1.32540 1.22706 0.96969 0.90235 1.00936 1.22529 0.92288 1.00113 0.85900 1.87946 1.74972 1.31345 1.37697 1.22918 0.93351 0.82999 1.02843 1.22873 0.96306 1.02656 0.88784 1.86585 1.77412 1.42123 1.20256 1.24018 0.73765 0.85870 0.85782 1.90670 1.47887 1.17874 1.84343 1.21400 1.03132 0.99060 0.88885 1.18051 0.96454 0.92657 0.89124 0.94501 1.20762 1.04542 0.91859 1.33656 0.94530 1.25566 0.98070 0.97340 0.95807 1.70029 1.33196 1.04519 1.51089 0.86202 0.81906 0.78378 0.79098 1.21102 1.22517 1.15328 1.20388 0.94681 0.94802 0.96484 1.21012 0.95974 0.98140 0.98523 1.21394 1.00280 0.99770 0.92878 1.21349 0.94415 1.00594 0.99303 1.21339 0.97836 0.97881 0.97137 1.21261 0.99946 1.01565 0.94198 0.88871 0.93786 0.89547 0.87457 0.90724 0.93791 0.91900 0.88666 0.93273 0.92557 0.85742 0.86992 0.93511 0.88103 0.86916 0.93216 0.87307 0.84353 0.83559 0.84149 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.55 71.98 0.69 -2.94 16 2 C 0.07 1.97 1.95 30.59 0.06 2.03 16 3 H 0.06 2.10 4.96 -2.39 -0.01 2.09 16 4 C 0.07 1.44 4.95 86.30 0.43 1.87 16 5 N -0.55 -13.81 4.83 -895.16 -4.32 -18.13 16 6 C 0.02 0.61 4.94 86.31 0.43 1.03 16 7 C 0.07 2.13 7.01 72.02 0.50 2.63 16 8 O -0.40 -11.27 10.83 -148.98 -1.61 -12.89 16 9 C 0.06 1.13 7.01 72.01 0.50 1.63 16 10 C 0.02 0.40 5.63 86.31 0.49 0.88 16 11 O -0.35 -11.66 9.83 -51.42 -0.51 -12.17 16 12 C 0.46 18.69 7.68 71.24 0.55 19.24 16 13 O -0.52 -25.27 14.22 21.95 0.31 -24.96 16 14 C -0.09 -3.31 5.05 29.85 0.15 -3.16 16 15 C 0.06 2.54 1.28 -12.29 -0.02 2.52 16 16 H 0.04 1.75 4.79 -2.39 -0.01 1.74 16 17 C -0.47 -26.21 6.94 25.60 0.18 -26.03 16 18 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 19 C 0.03 1.74 5.47 84.66 0.46 2.20 16 20 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 21 Si 0.92 47.07 27.04 68.60 1.85 48.93 16 22 H -0.28 -14.99 7.11 99.48 0.71 -14.29 16 23 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 24 H -0.23 -10.54 5.15 99.48 0.51 -10.03 16 25 C -0.06 -2.56 4.77 -19.86 -0.09 -2.66 16 26 C -0.12 -4.47 8.87 22.27 0.20 -4.27 16 27 C -0.13 -3.87 10.05 22.27 0.22 -3.64 16 28 C -0.14 -3.86 10.05 22.27 0.22 -3.64 16 29 C -0.12 -3.73 10.05 22.27 0.22 -3.50 16 30 C -0.15 -5.56 9.13 22.27 0.20 -5.36 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.28 8.08 -2.38 -0.02 1.26 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 2.37 5.95 -2.39 -0.01 2.35 16 38 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 3.71 7.80 -2.39 -0.02 3.69 16 45 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 46 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 47 H 0.11 4.23 7.77 -2.91 -0.02 4.21 16 48 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 49 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 50 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 51 H 0.11 3.99 6.95 -2.91 -0.02 3.97 16 Total: -1.00 -74.70 404.98 2.13 -72.57 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.71 Total: 28.27 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 5.40 Total: -21.15 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -4.02 Total: -78.61 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -1.81 Total: -50.01 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.85 Total: 48.93 kcal Total: -74.70 2.13 -72.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795983239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.618 kcal (2) G-P(sol) polarization free energy of solvation -74.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds