Wall clock time and date at job start Wed Apr 1 2020 04:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.51107 * 2 1 4 4 C 1.53093 * 109.54736 * 120.12254 * 2 1 3 5 5 N 1.47010 * 109.28981 * 176.83675 * 4 2 1 6 6 C 1.46900 * 111.00400 * 177.59494 * 5 4 2 7 7 C 1.50696 * 109.46852 * 293.95194 * 6 5 4 8 8 C 1.38306 * 119.93011 * 269.72393 * 7 6 5 9 9 C 1.38101 * 120.06685 * 179.72828 * 8 7 6 10 10 C 1.38873 * 119.93181 * 0.54617 * 9 8 7 11 11 O 1.35746 * 120.07011 * 179.74955 * 10 9 8 12 12 C 1.34837 * 117.00268 * 174.44395 * 11 10 9 13 13 H 1.07996 * 119.99448 * 5.05530 * 12 11 10 14 14 C 1.38649 * 120.00150 * 185.05875 * 12 11 10 15 15 N 1.31567 * 120.00106 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00192 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47045 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47464 * 119.99586 * 16 14 12 19 19 H 1.48499 * 109.47340 * 240.00228 * 16 14 12 20 20 C 1.38879 * 119.86096 * 359.72801 * 10 9 8 21 21 C 1.38096 * 119.93342 * 0.02562 * 20 10 9 22 22 C 1.47038 * 110.74431 * 301.36865 * 5 4 2 23 23 C 1.53000 * 109.25466 * 58.49293 * 22 5 4 24 24 C 1.53087 * 109.54264 * 183.23068 * 23 22 5 25 25 C 1.53197 * 109.02672 * 183.06696 * 24 23 22 26 26 C 1.53078 * 109.16025 * 56.87386 * 25 24 23 27 27 O 1.42903 * 109.45456 * 302.39070 * 26 25 24 28 28 C 1.42924 * 114.07651 * 61.17212 * 27 26 25 29 29 O 1.42939 * 109.41728 * 303.26946 * 23 22 5 30 30 H 1.08990 * 109.47024 * 180.09551 * 1 2 3 31 31 H 1.08999 * 109.46459 * 300.09278 * 1 2 3 32 32 H 1.09003 * 109.47063 * 60.08967 * 1 2 3 33 33 H 1.09009 * 109.50192 * 296.77377 * 4 2 1 34 34 H 1.09001 * 109.50527 * 56.84994 * 4 2 1 35 35 H 1.08999 * 109.47269 * 53.95073 * 6 5 4 36 36 H 1.09004 * 109.46917 * 173.95096 * 6 5 4 37 37 H 1.07996 * 119.96377 * 0.02562 * 8 7 6 38 38 H 1.08007 * 120.03055 * 180.27628 * 9 8 7 39 39 H 0.96995 * 119.99979 * 179.97438 * 15 14 12 40 40 H 1.08006 * 120.03121 * 180.02562 * 20 10 9 41 41 H 1.08002 * 119.96838 * 180.02562 * 21 20 10 42 42 H 1.09000 * 109.50647 * 298.55479 * 22 5 4 43 43 H 1.09002 * 109.50506 * 178.42879 * 22 5 4 44 44 H 1.09005 * 109.54582 * 302.92481 * 24 23 22 45 45 H 1.08996 * 109.55130 * 63.19909 * 24 23 22 46 46 H 1.09006 * 109.51904 * 296.97068 * 25 24 23 47 47 H 1.09001 * 109.52812 * 176.78414 * 25 24 23 48 48 H 1.09002 * 109.47579 * 182.39515 * 26 25 24 49 49 H 1.08998 * 109.47985 * 62.38908 * 26 25 24 50 50 H 1.09005 * 109.48220 * 178.95176 * 28 27 26 51 51 H 1.08992 * 109.48498 * 58.90360 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0423 -0.7240 1.2479 5 7 3.5104 -0.7873 1.2043 6 6 4.0460 -1.4256 2.4141 7 6 3.7601 -0.5546 3.6102 8 6 4.6754 0.4070 3.9982 9 6 4.4136 1.2105 5.0904 10 6 3.2352 1.0446 5.8062 11 8 2.9775 1.8295 6.8834 12 6 1.7674 1.6955 7.4630 13 1 1.0857 0.9317 7.1191 14 6 1.3984 2.5383 8.5003 15 7 2.2292 3.4684 8.9194 16 14 -0.2776 2.3522 9.3037 17 1 -1.0171 1.2400 8.6544 18 1 -0.1039 2.0548 10.7483 19 1 -1.0447 3.6140 9.1468 20 6 2.3208 0.0744 5.4175 21 6 2.5859 -0.7226 4.3213 22 6 3.9659 -1.4867 -0.0062 23 6 3.4328 -0.7574 -1.2410 24 6 3.8354 -1.5251 -2.5028 25 6 3.3627 -0.7455 -3.7339 26 6 3.9571 0.6646 -3.6945 27 8 3.5677 1.3115 -2.4813 28 6 4.0232 0.6532 -1.2973 29 8 2.0077 -0.6761 -1.1665 30 1 -0.3633 -1.0276 0.0017 31 1 -0.3632 0.5153 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.7279 -0.1803 2.1388 34 1 1.6346 -1.7345 1.2754 35 1 3.5733 -2.3981 2.5515 36 1 5.1231 -1.5568 2.3093 37 1 5.5934 0.5327 3.4435 38 1 5.1268 1.9642 5.3903 39 1 1.9708 4.0582 9.6448 40 1 1.4032 -0.0567 5.9719 41 1 1.8750 -1.4771 4.0182 42 1 3.5912 -2.5102 0.0021 43 1 5.0556 -1.4975 -0.0320 44 1 4.9197 -1.6328 -2.5337 45 1 3.3699 -2.5106 -2.4943 46 1 2.2744 -0.6823 -3.7292 47 1 3.6949 -1.2558 -4.6380 48 1 3.5900 1.2377 -4.5460 49 1 5.0443 0.6021 -3.7403 50 1 3.7019 1.2169 -0.4214 51 1 5.1113 0.5917 -1.3112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796606464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:29 Heat of formation + Delta-G solvation = -87.393262 kcal Electronic energy + Delta-G solvation = -31571.969357 eV Core-core repulsion = 27437.040170 eV Total energy + Delta-G solvation = -4134.929187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84268 -39.15049 -38.20995 -36.88321 -35.27982 -34.18795 -32.35153 -32.22398 -30.82864 -30.20321 -29.34888 -26.85333 -26.20700 -25.42189 -25.17471 -23.16642 -22.45114 -21.93415 -20.97275 -20.25960 -19.61338 -17.99724 -17.01261 -16.95371 -16.46063 -16.11369 -15.78611 -15.35461 -15.19750 -14.98228 -14.59460 -14.54836 -14.29019 -13.97269 -13.75671 -13.56926 -13.52201 -13.22035 -12.87558 -12.74861 -12.66551 -12.64429 -12.35072 -12.19457 -11.90750 -11.79413 -11.68182 -11.51257 -11.32031 -11.26613 -11.16452 -10.84841 -10.70877 -10.63022 -10.62592 -10.44112 -10.36818 -9.85632 -9.34828 -9.24952 -8.85612 -8.35920 -8.17484 -7.19528 -6.46706 -4.05547 2.20034 2.24704 3.10644 3.12554 3.17967 3.45083 3.77943 3.80400 3.95232 4.45657 4.51907 4.53943 4.61262 4.67924 4.82581 4.92065 5.01354 5.08112 5.14851 5.15775 5.23086 5.26313 5.30452 5.31816 5.36031 5.39567 5.42271 5.53006 5.55812 5.61270 5.68266 5.70014 5.73209 5.77186 5.84569 5.89431 5.93072 5.99892 6.07152 6.14259 6.19778 6.40234 6.68466 6.86378 6.88541 6.96801 7.01017 7.08473 7.24170 7.25261 7.37234 7.42907 7.80978 7.98381 8.99068 9.69218 10.71355 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002357 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.408069 B =11875.015072 C =12275.119185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.071 0.929 4 C 0.023 3.977 5 N -0.530 5.530 6 C 0.114 3.886 7 C -0.181 4.181 8 C -0.052 4.052 9 C -0.194 4.194 10 C 0.156 3.844 11 O -0.178 6.178 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.862 5.862 16 Si 0.941 3.059 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.234 4.234 21 C -0.065 4.065 22 C 0.030 3.970 23 C 0.093 3.907 24 C -0.107 4.107 25 C -0.151 4.151 26 C 0.058 3.942 27 O -0.374 6.374 28 C 0.046 3.954 29 O -0.364 6.364 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.047 0.953 50 H 0.111 0.889 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 -10.232 -22.433 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.089 0.911 4 C -0.105 4.105 5 N -0.254 5.254 6 C -0.012 4.012 7 C -0.182 4.182 8 C -0.071 4.071 9 C -0.213 4.213 10 C 0.102 3.898 11 O -0.081 6.081 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.497 5.497 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.253 4.253 21 C -0.084 4.084 22 C -0.098 4.098 23 C 0.052 3.948 24 C -0.145 4.145 25 C -0.189 4.189 26 C -0.019 4.019 27 O -0.292 6.292 28 C -0.031 4.031 29 O -0.283 6.283 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.120 0.880 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.065 0.935 50 H 0.129 0.871 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.425 -9.309 -22.273 24.262 hybrid contribution -0.843 -1.199 0.743 1.643 sum 1.583 -10.508 -21.530 24.010 Atomic orbital electron populations 1.21719 0.92826 1.02633 1.02796 1.22194 0.94724 0.96171 0.83956 0.91146 1.22899 0.87730 0.99988 0.99926 1.62299 1.09113 1.52518 1.01509 1.20804 0.99283 0.93897 0.87211 1.19017 0.97382 1.02661 0.99135 1.20437 0.97837 0.93846 0.94961 1.20217 0.98089 1.04315 0.98687 1.19396 0.93204 0.89987 0.87166 1.83982 1.34809 1.53769 1.35533 1.21363 0.90973 1.18268 1.16128 0.89052 1.25292 0.99617 0.95050 0.96581 1.70050 1.35347 1.17783 1.26504 0.85653 0.80207 0.78600 0.79003 1.19123 1.20146 1.20109 1.21115 1.02324 1.00652 1.01239 1.20580 0.95515 0.97694 0.94624 1.22692 1.00799 0.96017 0.90318 1.22012 0.82582 0.95734 0.94427 1.21552 1.00908 0.99193 0.92836 1.22114 1.02795 0.96295 0.97650 1.22570 0.98135 0.93301 0.87845 1.87991 1.77480 1.50290 1.13473 1.23104 0.98032 0.93333 0.88663 1.87986 1.19184 1.78053 1.43118 0.92186 0.90673 0.91678 0.88471 0.94470 0.94888 0.90718 0.87132 0.86579 0.92053 0.85657 0.88033 0.93971 0.89843 0.90492 0.90768 0.90206 0.91064 0.89083 0.93514 0.87095 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.57 37.16 0.36 -1.17 16 2 C 0.09 1.08 3.03 -26.68 -0.08 1.00 16 3 H 0.07 0.95 6.45 -51.93 -0.33 0.62 16 4 C 0.02 0.29 4.55 -3.72 -0.02 0.27 16 5 N -0.53 -6.63 4.14 -235.79 -0.98 -7.61 16 6 C 0.11 1.50 5.12 -4.98 -0.03 1.47 16 7 C -0.18 -2.95 4.89 -104.58 -0.51 -3.47 16 8 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 9 C -0.19 -4.04 9.99 -39.40 -0.39 -4.43 16 10 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 11 O -0.18 -5.04 9.76 0.04 0.00 -5.04 16 12 C -0.39 -10.84 9.49 30.88 0.29 -10.55 16 13 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 14 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 15 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 16 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 C -0.23 -4.97 9.17 -39.40 -0.36 -5.33 16 21 C -0.07 -1.15 7.92 -39.61 -0.31 -1.47 16 22 C 0.03 0.32 4.35 -3.75 -0.02 0.30 16 23 C 0.09 0.98 0.71 -90.56 -0.06 0.92 16 24 C -0.11 -0.90 5.04 -26.58 -0.13 -1.03 16 25 C -0.15 -1.22 5.98 -26.59 -0.16 -1.38 16 26 C 0.06 0.51 6.84 37.20 0.25 0.76 16 27 O -0.37 -4.54 10.70 -42.68 -0.46 -4.99 16 28 C 0.05 0.51 5.16 37.17 0.19 0.71 16 29 O -0.36 -4.56 9.34 -42.68 -0.40 -4.96 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.41 6.00 -51.92 -0.31 1.10 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.12 2.36 8.06 -52.48 -0.42 1.93 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 40 H 0.13 2.69 5.64 -52.48 -0.30 2.39 16 41 H 0.10 1.56 8.00 -52.49 -0.42 1.14 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.78 7.83 -51.93 -0.41 0.37 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.11 1.44 6.09 -51.93 -0.32 1.12 16 51 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -30.77 395.46 -10.10 -40.87 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.24 Total: 5.05 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.72 Total: -20.25 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: -0.22 Total: -32.04 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.85 Total: -14.99 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.77 -10.10 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796606464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.521 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds