Wall clock time and date at job start Wed Apr 1 2020 04:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.51107 * 2 1 4 4 C 1.53093 * 109.54736 * 120.12254 * 2 1 3 5 5 N 1.47010 * 109.28981 * 176.83675 * 4 2 1 6 6 C 1.46900 * 111.00400 * 177.59494 * 5 4 2 7 7 C 1.50696 * 109.46852 * 293.95194 * 6 5 4 8 8 C 1.38306 * 119.93011 * 269.72393 * 7 6 5 9 9 C 1.38101 * 120.06685 * 179.72828 * 8 7 6 10 10 C 1.38873 * 119.93181 * 0.54617 * 9 8 7 11 11 O 1.35746 * 120.07011 * 179.74955 * 10 9 8 12 12 C 1.34837 * 117.00268 * 174.44395 * 11 10 9 13 13 H 1.07996 * 119.99448 * 5.05530 * 12 11 10 14 14 C 1.38649 * 120.00150 * 185.05875 * 12 11 10 15 15 N 1.31567 * 120.00106 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00192 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47045 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47464 * 119.99586 * 16 14 12 19 19 H 1.48499 * 109.47340 * 240.00228 * 16 14 12 20 20 C 1.38879 * 119.86096 * 359.72801 * 10 9 8 21 21 C 1.38096 * 119.93342 * 0.02562 * 20 10 9 22 22 C 1.47038 * 110.74431 * 301.36865 * 5 4 2 23 23 C 1.53000 * 109.25466 * 58.49293 * 22 5 4 24 24 C 1.53087 * 109.54264 * 183.23068 * 23 22 5 25 25 C 1.53197 * 109.02672 * 183.06696 * 24 23 22 26 26 C 1.53078 * 109.16025 * 56.87386 * 25 24 23 27 27 O 1.42903 * 109.45456 * 302.39070 * 26 25 24 28 28 C 1.42924 * 114.07651 * 61.17212 * 27 26 25 29 29 O 1.42939 * 109.41728 * 303.26946 * 23 22 5 30 30 H 1.08990 * 109.47024 * 180.09551 * 1 2 3 31 31 H 1.08999 * 109.46459 * 300.09278 * 1 2 3 32 32 H 1.09003 * 109.47063 * 60.08967 * 1 2 3 33 33 H 1.09009 * 109.50192 * 296.77377 * 4 2 1 34 34 H 1.09001 * 109.50527 * 56.84994 * 4 2 1 35 35 H 1.08999 * 109.47269 * 53.95073 * 6 5 4 36 36 H 1.09004 * 109.46917 * 173.95096 * 6 5 4 37 37 H 1.07996 * 119.96377 * 0.02562 * 8 7 6 38 38 H 1.08007 * 120.03055 * 180.27628 * 9 8 7 39 39 H 0.96995 * 119.99979 * 179.97438 * 15 14 12 40 40 H 1.08006 * 120.03121 * 180.02562 * 20 10 9 41 41 H 1.08002 * 119.96838 * 180.02562 * 21 20 10 42 42 H 1.09000 * 109.50647 * 298.55479 * 22 5 4 43 43 H 1.09002 * 109.50506 * 178.42879 * 22 5 4 44 44 H 1.09005 * 109.54582 * 302.92481 * 24 23 22 45 45 H 1.08996 * 109.55130 * 63.19909 * 24 23 22 46 46 H 1.09006 * 109.51904 * 296.97068 * 25 24 23 47 47 H 1.09001 * 109.52812 * 176.78414 * 25 24 23 48 48 H 1.09002 * 109.47579 * 182.39515 * 26 25 24 49 49 H 1.08998 * 109.47985 * 62.38908 * 26 25 24 50 50 H 1.09005 * 109.48220 * 178.95176 * 28 27 26 51 51 H 1.08992 * 109.48498 * 58.90360 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0423 -0.7240 1.2479 5 7 3.5104 -0.7873 1.2043 6 6 4.0460 -1.4256 2.4141 7 6 3.7601 -0.5546 3.6102 8 6 4.6754 0.4070 3.9982 9 6 4.4136 1.2105 5.0904 10 6 3.2352 1.0446 5.8062 11 8 2.9775 1.8295 6.8834 12 6 1.7674 1.6955 7.4630 13 1 1.0857 0.9317 7.1191 14 6 1.3984 2.5383 8.5003 15 7 2.2292 3.4684 8.9194 16 14 -0.2776 2.3522 9.3037 17 1 -1.0171 1.2400 8.6544 18 1 -0.1039 2.0548 10.7483 19 1 -1.0447 3.6140 9.1468 20 6 2.3208 0.0744 5.4175 21 6 2.5859 -0.7226 4.3213 22 6 3.9659 -1.4867 -0.0062 23 6 3.4328 -0.7574 -1.2410 24 6 3.8354 -1.5251 -2.5028 25 6 3.3627 -0.7455 -3.7339 26 6 3.9571 0.6646 -3.6945 27 8 3.5677 1.3115 -2.4813 28 6 4.0232 0.6532 -1.2973 29 8 2.0077 -0.6761 -1.1665 30 1 -0.3633 -1.0276 0.0017 31 1 -0.3632 0.5153 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.7279 -0.1803 2.1388 34 1 1.6346 -1.7345 1.2754 35 1 3.5733 -2.3981 2.5515 36 1 5.1231 -1.5568 2.3093 37 1 5.5934 0.5327 3.4435 38 1 5.1268 1.9642 5.3903 39 1 1.9708 4.0582 9.6448 40 1 1.4032 -0.0567 5.9719 41 1 1.8750 -1.4771 4.0182 42 1 3.5912 -2.5102 0.0021 43 1 5.0556 -1.4975 -0.0320 44 1 4.9197 -1.6328 -2.5337 45 1 3.3699 -2.5106 -2.4943 46 1 2.2744 -0.6823 -3.7292 47 1 3.6949 -1.2558 -4.6380 48 1 3.5900 1.2377 -4.5460 49 1 5.0443 0.6021 -3.7403 50 1 3.7019 1.2169 -0.4214 51 1 5.1113 0.5917 -1.3112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796606464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:28 Heat of formation + Delta-G solvation = -106.746130 kcal Electronic energy + Delta-G solvation = -31572.808561 eV Core-core repulsion = 27437.040170 eV Total energy + Delta-G solvation = -4135.768391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.72124 -40.76790 -39.24500 -38.33296 -36.45499 -34.99317 -34.29374 -33.00288 -32.03261 -31.78170 -30.48868 -27.80960 -27.69457 -26.73911 -26.17350 -24.21435 -23.65775 -23.25640 -22.02884 -21.48786 -20.49337 -19.83222 -18.82087 -17.77860 -17.39516 -17.00778 -16.74893 -16.53865 -16.36388 -16.13408 -15.91987 -15.80567 -15.54432 -15.45809 -15.13215 -14.86660 -14.56421 -14.33723 -14.17830 -14.09386 -13.62570 -13.59213 -13.48899 -13.27438 -13.05771 -12.99049 -12.78473 -12.67957 -12.55448 -12.40934 -12.26926 -12.19499 -12.10250 -11.98884 -11.80000 -11.44839 -11.22847 -11.16397 -10.80959 -10.71115 -10.10707 -9.75077 -9.33673 -8.88367 -8.47289 -6.15198 0.61165 0.67755 1.34440 1.42559 1.52547 2.17119 2.60519 2.68880 2.97088 3.03078 3.26327 3.53773 3.68083 3.72259 3.77101 3.90335 4.01702 4.05287 4.07221 4.13845 4.19624 4.22478 4.33919 4.37127 4.42977 4.48880 4.58975 4.60825 4.63853 4.66793 4.69619 4.70778 4.81723 4.82581 4.84852 4.91250 4.98635 5.04466 5.08183 5.09549 5.15391 5.17605 5.26060 5.30996 5.38252 5.57925 5.72304 5.77973 5.98548 6.02451 6.03956 6.19491 6.24704 6.40970 6.97747 7.79289 8.76263 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002357 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.408069 B =11875.015072 C =12275.119185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.090 3.910 3 H 0.052 0.948 4 C 0.028 3.972 5 N -0.539 5.539 6 C 0.117 3.883 7 C -0.153 4.153 8 C -0.045 4.045 9 C -0.206 4.206 10 C 0.115 3.885 11 O -0.233 6.233 12 C -0.411 4.411 13 H 0.101 0.899 14 C -0.024 4.024 15 N -0.921 5.921 16 Si 1.018 2.982 17 H -0.251 1.251 18 H -0.268 1.268 19 H -0.269 1.269 20 C -0.242 4.242 21 C -0.061 4.061 22 C 0.034 3.966 23 C 0.088 3.912 24 C -0.105 4.105 25 C -0.147 4.147 26 C 0.051 3.949 27 O -0.403 6.403 28 C 0.047 3.953 29 O -0.375 6.375 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.147 0.853 38 H 0.111 0.889 39 H 0.272 0.728 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.048 0.952 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 -13.129 -25.373 28.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.032 3.968 3 H 0.070 0.930 4 C -0.101 4.101 5 N -0.263 5.263 6 C -0.010 4.010 7 C -0.154 4.154 8 C -0.064 4.064 9 C -0.225 4.225 10 C 0.064 3.936 11 O -0.140 6.140 12 C -0.487 4.487 13 H 0.118 0.882 14 C -0.221 4.221 15 N -0.560 5.560 16 Si 0.837 3.163 17 H -0.175 1.175 18 H -0.193 1.193 19 H -0.194 1.194 20 C -0.261 4.261 21 C -0.079 4.079 22 C -0.094 4.094 23 C 0.048 3.952 24 C -0.143 4.143 25 C -0.184 4.184 26 C -0.025 4.025 27 O -0.322 6.322 28 C -0.030 4.030 29 O -0.295 6.295 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.164 0.836 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.066 0.934 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.082 0.918 50 H 0.105 0.895 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.867 -12.251 -25.275 28.233 hybrid contribution -0.806 -0.447 1.281 1.578 sum 2.061 -12.698 -23.994 27.225 Atomic orbital electron populations 1.21704 0.91976 1.03066 1.02942 1.22108 0.95459 0.95176 0.84053 0.93006 1.22794 0.88240 0.99865 0.99168 1.62216 1.08757 1.53229 1.02125 1.20835 1.01092 0.93295 0.85730 1.19524 0.95660 1.01103 0.99104 1.20830 0.99289 0.92724 0.93519 1.20467 0.97233 1.05135 0.99644 1.19938 0.95122 0.90970 0.87535 1.83945 1.35566 1.56392 1.38114 1.21831 0.91427 1.18815 1.16610 0.88189 1.26578 1.04057 0.94469 0.97018 1.70194 1.38054 1.19674 1.28038 0.84541 0.74690 0.79119 0.77936 1.17477 1.19316 1.19395 1.21190 1.01625 1.00879 1.02419 1.20882 0.96584 0.97321 0.93141 1.22756 1.02052 0.95786 0.88826 1.22220 0.81520 0.95683 0.95774 1.21615 1.02348 0.98809 0.91514 1.22079 1.01408 0.96158 0.98792 1.22793 0.99285 0.93657 0.86746 1.87949 1.78111 1.51454 1.14669 1.23040 0.98782 0.93316 0.87816 1.87984 1.20658 1.77862 1.42987 0.91538 0.90525 0.91593 0.90435 0.93965 0.93538 0.88220 0.83574 0.87105 0.91876 0.86637 0.85119 0.93409 0.87646 0.88176 0.90421 0.92363 0.88585 0.88302 0.91801 0.89525 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.57 71.99 0.69 -2.19 16 2 C 0.09 2.13 3.03 30.63 0.09 2.22 16 3 H 0.05 1.41 6.45 -2.39 -0.02 1.40 16 4 C 0.03 0.65 4.55 86.31 0.39 1.04 16 5 N -0.54 -11.64 4.14 -899.92 -3.73 -15.37 16 6 C 0.12 2.52 5.12 85.56 0.44 2.96 16 7 C -0.15 -4.56 4.89 -19.83 -0.10 -4.65 16 8 C -0.05 -1.48 9.69 22.25 0.22 -1.27 16 9 C -0.21 -8.73 9.99 22.39 0.22 -8.50 16 10 C 0.11 5.72 6.65 22.58 0.15 5.87 16 11 O -0.23 -14.16 9.76 -22.77 -0.22 -14.38 16 12 C -0.41 -24.05 9.49 67.92 0.64 -23.41 16 13 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 14 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 15 N -0.92 -56.99 13.67 21.61 0.30 -56.69 16 16 Si 1.02 43.17 29.55 68.60 2.03 45.20 16 17 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 C -0.24 -10.45 9.17 22.39 0.21 -10.25 16 21 C -0.06 -2.04 7.92 22.25 0.18 -1.86 16 22 C 0.03 0.57 4.35 86.28 0.37 0.94 16 23 C 0.09 1.61 0.71 -10.76 -0.01 1.61 16 24 C -0.11 -1.38 5.04 30.69 0.15 -1.22 16 25 C -0.15 -1.96 5.98 30.69 0.18 -1.77 16 26 C 0.05 0.77 6.84 72.01 0.49 1.26 16 27 O -0.40 -9.24 10.70 -141.86 -1.52 -10.76 16 28 C 0.05 0.98 5.16 71.99 0.37 1.35 16 29 O -0.38 -8.74 9.34 -141.86 -1.33 -10.06 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 2.12 6.00 -2.38 -0.01 2.11 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.94 8.06 -2.39 -0.02 0.92 16 36 H 0.10 1.76 7.99 -2.39 -0.02 1.74 16 37 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.12 5.13 5.64 -2.91 -0.02 5.11 16 41 H 0.13 3.64 8.00 -2.91 -0.02 3.62 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.11 1.35 8.09 -2.39 -0.02 1.33 16 44 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 1.04 7.83 -2.38 -0.02 1.02 16 47 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.09 2.18 6.09 -2.38 -0.01 2.17 16 51 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -72.66 395.46 1.61 -71.05 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.91 Total: 29.80 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 5.17 Total: -38.78 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -3.43 Total: -72.06 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -3.07 Total: -35.20 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.66 1.61 -71.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796606464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.697 kcal (2) G-P(sol) polarization free energy of solvation -72.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds