Wall clock time and date at job start Wed Apr 1 2020 04:44:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 H 1.08996 * 109.51107 * 2 1
4 4 C 1.53093 * 109.54736 * 120.12254 * 2 1 3
5 5 N 1.47010 * 109.28981 * 176.83675 * 4 2 1
6 6 C 1.46900 * 111.00400 * 177.59494 * 5 4 2
7 7 C 1.50696 * 109.46852 * 293.95194 * 6 5 4
8 8 C 1.38306 * 119.93011 * 269.72393 * 7 6 5
9 9 C 1.38101 * 120.06685 * 179.72828 * 8 7 6
10 10 C 1.38873 * 119.93181 * 0.54617 * 9 8 7
11 11 O 1.35746 * 120.07011 * 179.74955 * 10 9 8
12 12 C 1.34837 * 117.00268 * 174.44395 * 11 10 9
13 13 H 1.07996 * 119.99448 * 5.05530 * 12 11 10
14 14 C 1.38649 * 120.00150 * 185.05875 * 12 11 10
15 15 N 1.31567 * 120.00106 * 359.97438 * 14 12 11
16 16 Si 1.86794 * 120.00192 * 180.02562 * 14 12 11
17 17 H 1.48503 * 109.47045 * 359.97438 * 16 14 12
18 18 H 1.48505 * 109.47464 * 119.99586 * 16 14 12
19 19 H 1.48499 * 109.47340 * 240.00228 * 16 14 12
20 20 C 1.38879 * 119.86096 * 359.72801 * 10 9 8
21 21 C 1.38096 * 119.93342 * 0.02562 * 20 10 9
22 22 C 1.47038 * 110.74431 * 301.36865 * 5 4 2
23 23 C 1.53000 * 109.25466 * 58.49293 * 22 5 4
24 24 C 1.53087 * 109.54264 * 183.23068 * 23 22 5
25 25 C 1.53197 * 109.02672 * 183.06696 * 24 23 22
26 26 C 1.53078 * 109.16025 * 56.87386 * 25 24 23
27 27 O 1.42903 * 109.45456 * 302.39070 * 26 25 24
28 28 C 1.42924 * 114.07651 * 61.17212 * 27 26 25
29 29 O 1.42939 * 109.41728 * 303.26946 * 23 22 5
30 30 H 1.08990 * 109.47024 * 180.09551 * 1 2 3
31 31 H 1.08999 * 109.46459 * 300.09278 * 1 2 3
32 32 H 1.09003 * 109.47063 * 60.08967 * 1 2 3
33 33 H 1.09009 * 109.50192 * 296.77377 * 4 2 1
34 34 H 1.09001 * 109.50527 * 56.84994 * 4 2 1
35 35 H 1.08999 * 109.47269 * 53.95073 * 6 5 4
36 36 H 1.09004 * 109.46917 * 173.95096 * 6 5 4
37 37 H 1.07996 * 119.96377 * 0.02562 * 8 7 6
38 38 H 1.08007 * 120.03055 * 180.27628 * 9 8 7
39 39 H 0.96995 * 119.99979 * 179.97438 * 15 14 12
40 40 H 1.08006 * 120.03121 * 180.02562 * 20 10 9
41 41 H 1.08002 * 119.96838 * 180.02562 * 21 20 10
42 42 H 1.09000 * 109.50647 * 298.55479 * 22 5 4
43 43 H 1.09002 * 109.50506 * 178.42879 * 22 5 4
44 44 H 1.09005 * 109.54582 * 302.92481 * 24 23 22
45 45 H 1.08996 * 109.55130 * 63.19909 * 24 23 22
46 46 H 1.09006 * 109.51904 * 296.97068 * 25 24 23
47 47 H 1.09001 * 109.52812 * 176.78414 * 25 24 23
48 48 H 1.09002 * 109.47579 * 182.39515 * 26 25 24
49 49 H 1.08998 * 109.47985 * 62.38908 * 26 25 24
50 50 H 1.09005 * 109.48220 * 178.95176 * 28 27 26
51 51 H 1.08992 * 109.48498 * 58.90360 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8941 1.0274 0.0000
4 6 2.0423 -0.7240 1.2479
5 7 3.5104 -0.7873 1.2043
6 6 4.0460 -1.4256 2.4141
7 6 3.7601 -0.5546 3.6102
8 6 4.6754 0.4070 3.9982
9 6 4.4136 1.2105 5.0904
10 6 3.2352 1.0446 5.8062
11 8 2.9775 1.8295 6.8834
12 6 1.7674 1.6955 7.4630
13 1 1.0857 0.9317 7.1191
14 6 1.3984 2.5383 8.5003
15 7 2.2292 3.4684 8.9194
16 14 -0.2776 2.3522 9.3037
17 1 -1.0171 1.2400 8.6544
18 1 -0.1039 2.0548 10.7483
19 1 -1.0447 3.6140 9.1468
20 6 2.3208 0.0744 5.4175
21 6 2.5859 -0.7226 4.3213
22 6 3.9659 -1.4867 -0.0062
23 6 3.4328 -0.7574 -1.2410
24 6 3.8354 -1.5251 -2.5028
25 6 3.3627 -0.7455 -3.7339
26 6 3.9571 0.6646 -3.6945
27 8 3.5677 1.3115 -2.4813
28 6 4.0232 0.6532 -1.2973
29 8 2.0077 -0.6761 -1.1665
30 1 -0.3633 -1.0276 0.0017
31 1 -0.3632 0.5153 0.8892
32 1 -0.3633 0.5125 -0.8908
33 1 1.7279 -0.1803 2.1388
34 1 1.6346 -1.7345 1.2754
35 1 3.5733 -2.3981 2.5515
36 1 5.1231 -1.5568 2.3093
37 1 5.5934 0.5327 3.4435
38 1 5.1268 1.9642 5.3903
39 1 1.9708 4.0582 9.6448
40 1 1.4032 -0.0567 5.9719
41 1 1.8750 -1.4771 4.0182
42 1 3.5912 -2.5102 0.0021
43 1 5.0556 -1.4975 -0.0320
44 1 4.9197 -1.6328 -2.5337
45 1 3.3699 -2.5106 -2.4943
46 1 2.2744 -0.6823 -3.7292
47 1 3.6949 -1.2558 -4.6380
48 1 3.5900 1.2377 -4.5460
49 1 5.0443 0.6021 -3.7403
50 1 3.7019 1.2169 -0.4214
51 1 5.1113 0.5917 -1.3112
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000796606464.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:44:28
Heat of formation + Delta-G solvation = -106.746130 kcal
Electronic energy + Delta-G solvation = -31572.808561 eV
Core-core repulsion = 27437.040170 eV
Total energy + Delta-G solvation = -4135.768391 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.193 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.72124 -40.76790 -39.24500 -38.33296 -36.45499 -34.99317 -34.29374 -33.00288
-32.03261 -31.78170 -30.48868 -27.80960 -27.69457 -26.73911 -26.17350 -24.21435
-23.65775 -23.25640 -22.02884 -21.48786 -20.49337 -19.83222 -18.82087 -17.77860
-17.39516 -17.00778 -16.74893 -16.53865 -16.36388 -16.13408 -15.91987 -15.80567
-15.54432 -15.45809 -15.13215 -14.86660 -14.56421 -14.33723 -14.17830 -14.09386
-13.62570 -13.59213 -13.48899 -13.27438 -13.05771 -12.99049 -12.78473 -12.67957
-12.55448 -12.40934 -12.26926 -12.19499 -12.10250 -11.98884 -11.80000 -11.44839
-11.22847 -11.16397 -10.80959 -10.71115 -10.10707 -9.75077 -9.33673 -8.88367
-8.47289 -6.15198 0.61165 0.67755 1.34440 1.42559 1.52547 2.17119
2.60519 2.68880 2.97088 3.03078 3.26327 3.53773 3.68083 3.72259
3.77101 3.90335 4.01702 4.05287 4.07221 4.13845 4.19624 4.22478
4.33919 4.37127 4.42977 4.48880 4.58975 4.60825 4.63853 4.66793
4.69619 4.70778 4.81723 4.82581 4.84852 4.91250 4.98635 5.04466
5.08183 5.09549 5.15391 5.17605 5.26060 5.30996 5.38252 5.57925
5.72304 5.77973 5.98548 6.02451 6.03956 6.19491 6.24704 6.40970
6.97747 7.79289 8.76263
Molecular weight = 347.19amu
Principal moments of inertia in cm(-1)
A = 0.018256 B = 0.002357 C = 0.002280
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1533.408069 B =11875.015072 C =12275.119185
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.090 3.910
3 H 0.052 0.948
4 C 0.028 3.972
5 N -0.539 5.539
6 C 0.117 3.883
7 C -0.153 4.153
8 C -0.045 4.045
9 C -0.206 4.206
10 C 0.115 3.885
11 O -0.233 6.233
12 C -0.411 4.411
13 H 0.101 0.899
14 C -0.024 4.024
15 N -0.921 5.921
16 Si 1.018 2.982
17 H -0.251 1.251
18 H -0.268 1.268
19 H -0.269 1.269
20 C -0.242 4.242
21 C -0.061 4.061
22 C 0.034 3.966
23 C 0.088 3.912
24 C -0.105 4.105
25 C -0.147 4.147
26 C 0.051 3.949
27 O -0.403 6.403
28 C 0.047 3.953
29 O -0.375 6.375
30 H 0.066 0.934
31 H 0.076 0.924
32 H 0.065 0.935
33 H 0.077 0.923
34 H 0.042 0.958
35 H 0.046 0.954
36 H 0.100 0.900
37 H 0.147 0.853
38 H 0.111 0.889
39 H 0.272 0.728
40 H 0.116 0.884
41 H 0.131 0.869
42 H 0.048 0.952
43 H 0.105 0.895
44 H 0.100 0.900
45 H 0.077 0.923
46 H 0.058 0.942
47 H 0.096 0.904
48 H 0.099 0.901
49 H 0.064 0.936
50 H 0.087 0.913
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.762 -13.129 -25.373 28.702
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.032 3.968
3 H 0.070 0.930
4 C -0.101 4.101
5 N -0.263 5.263
6 C -0.010 4.010
7 C -0.154 4.154
8 C -0.064 4.064
9 C -0.225 4.225
10 C 0.064 3.936
11 O -0.140 6.140
12 C -0.487 4.487
13 H 0.118 0.882
14 C -0.221 4.221
15 N -0.560 5.560
16 Si 0.837 3.163
17 H -0.175 1.175
18 H -0.193 1.193
19 H -0.194 1.194
20 C -0.261 4.261
21 C -0.079 4.079
22 C -0.094 4.094
23 C 0.048 3.952
24 C -0.143 4.143
25 C -0.184 4.184
26 C -0.025 4.025
27 O -0.322 6.322
28 C -0.030 4.030
29 O -0.295 6.295
30 H 0.085 0.915
31 H 0.095 0.905
32 H 0.084 0.916
33 H 0.096 0.904
34 H 0.060 0.940
35 H 0.065 0.935
36 H 0.118 0.882
37 H 0.164 0.836
38 H 0.129 0.871
39 H 0.081 0.919
40 H 0.134 0.866
41 H 0.149 0.851
42 H 0.066 0.934
43 H 0.124 0.876
44 H 0.118 0.882
45 H 0.096 0.904
46 H 0.076 0.924
47 H 0.114 0.886
48 H 0.117 0.883
49 H 0.082 0.918
50 H 0.105 0.895
51 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 2.867 -12.251 -25.275 28.233
hybrid contribution -0.806 -0.447 1.281 1.578
sum 2.061 -12.698 -23.994 27.225
Atomic orbital electron populations
1.21704 0.91976 1.03066 1.02942 1.22108 0.95459 0.95176 0.84053
0.93006 1.22794 0.88240 0.99865 0.99168 1.62216 1.08757 1.53229
1.02125 1.20835 1.01092 0.93295 0.85730 1.19524 0.95660 1.01103
0.99104 1.20830 0.99289 0.92724 0.93519 1.20467 0.97233 1.05135
0.99644 1.19938 0.95122 0.90970 0.87535 1.83945 1.35566 1.56392
1.38114 1.21831 0.91427 1.18815 1.16610 0.88189 1.26578 1.04057
0.94469 0.97018 1.70194 1.38054 1.19674 1.28038 0.84541 0.74690
0.79119 0.77936 1.17477 1.19316 1.19395 1.21190 1.01625 1.00879
1.02419 1.20882 0.96584 0.97321 0.93141 1.22756 1.02052 0.95786
0.88826 1.22220 0.81520 0.95683 0.95774 1.21615 1.02348 0.98809
0.91514 1.22079 1.01408 0.96158 0.98792 1.22793 0.99285 0.93657
0.86746 1.87949 1.78111 1.51454 1.14669 1.23040 0.98782 0.93316
0.87816 1.87984 1.20658 1.77862 1.42987 0.91538 0.90525 0.91593
0.90435 0.93965 0.93538 0.88220 0.83574 0.87105 0.91876 0.86637
0.85119 0.93409 0.87646 0.88176 0.90421 0.92363 0.88585 0.88302
0.91801 0.89525 0.91082
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.88 9.57 71.99 0.69 -2.19 16
2 C 0.09 2.13 3.03 30.63 0.09 2.22 16
3 H 0.05 1.41 6.45 -2.39 -0.02 1.40 16
4 C 0.03 0.65 4.55 86.31 0.39 1.04 16
5 N -0.54 -11.64 4.14 -899.92 -3.73 -15.37 16
6 C 0.12 2.52 5.12 85.56 0.44 2.96 16
7 C -0.15 -4.56 4.89 -19.83 -0.10 -4.65 16
8 C -0.05 -1.48 9.69 22.25 0.22 -1.27 16
9 C -0.21 -8.73 9.99 22.39 0.22 -8.50 16
10 C 0.11 5.72 6.65 22.58 0.15 5.87 16
11 O -0.23 -14.16 9.76 -22.77 -0.22 -14.38 16
12 C -0.41 -24.05 9.49 67.92 0.64 -23.41 16
13 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16
14 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16
15 N -0.92 -56.99 13.67 21.61 0.30 -56.69 16
16 Si 1.02 43.17 29.55 68.60 2.03 45.20 16
17 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16
18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16
19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16
20 C -0.24 -10.45 9.17 22.39 0.21 -10.25 16
21 C -0.06 -2.04 7.92 22.25 0.18 -1.86 16
22 C 0.03 0.57 4.35 86.28 0.37 0.94 16
23 C 0.09 1.61 0.71 -10.76 -0.01 1.61 16
24 C -0.11 -1.38 5.04 30.69 0.15 -1.22 16
25 C -0.15 -1.96 5.98 30.69 0.18 -1.77 16
26 C 0.05 0.77 6.84 72.01 0.49 1.26 16
27 O -0.40 -9.24 10.70 -141.86 -1.52 -10.76 16
28 C 0.05 0.98 5.16 71.99 0.37 1.35 16
29 O -0.38 -8.74 9.34 -141.86 -1.33 -10.06 16
30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
33 H 0.08 2.12 6.00 -2.38 -0.01 2.11 16
34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16
35 H 0.05 0.94 8.06 -2.39 -0.02 0.92 16
36 H 0.10 1.76 7.99 -2.39 -0.02 1.74 16
37 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16
38 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16
39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16
40 H 0.12 5.13 5.64 -2.91 -0.02 5.11 16
41 H 0.13 3.64 8.00 -2.91 -0.02 3.62 16
42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16
43 H 0.11 1.35 8.09 -2.39 -0.02 1.33 16
44 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16
45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16
46 H 0.06 1.04 7.83 -2.38 -0.02 1.02 16
47 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16
48 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16
49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
50 H 0.09 2.18 6.09 -2.38 -0.01 2.17 16
51 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16
Total: -1.00 -72.66 395.46 1.61 -71.05
By element:
Atomic # 1 Polarization: 28.88 SS G_CDS: 0.91 Total: 29.80 kcal
Atomic # 6 Polarization: -43.94 SS G_CDS: 5.17 Total: -38.78 kcal
Atomic # 7 Polarization: -68.63 SS G_CDS: -3.43 Total: -72.06 kcal
Atomic # 8 Polarization: -32.14 SS G_CDS: -3.07 Total: -35.20 kcal
Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal
Total: -72.66 1.61 -71.05 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000796606464.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.697 kcal
(2) G-P(sol) polarization free energy of solvation -72.657 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.354 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.049 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds