Wall clock time and date at job start Wed Apr 1 2020 04:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.54726 * 2 1 4 4 C 1.53095 * 109.50983 * 120.11343 * 2 1 3 5 5 N 1.47011 * 109.29675 * 176.79568 * 4 2 1 6 6 C 1.46902 * 111.00152 * 177.61023 * 5 4 2 7 7 C 1.50697 * 109.47218 * 66.04460 * 6 5 4 8 8 C 1.38306 * 119.92775 * 90.00152 * 7 6 5 9 9 C 1.38103 * 120.06789 * 179.97438 * 8 7 6 10 10 C 1.38880 * 119.92898 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.06482 * 180.02562 * 10 9 8 12 12 C 1.34833 * 117.00300 * 5.53566 * 11 10 9 13 13 H 1.07997 * 119.99571 * 354.93885 * 12 11 10 14 14 C 1.38652 * 120.00010 * 174.66892 * 12 11 10 15 15 N 1.31559 * 120.00071 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99847 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46932 * 60.00019 * 16 14 12 18 18 H 1.48497 * 109.46941 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47151 * 299.99988 * 16 14 12 20 20 C 1.38879 * 119.86441 * 0.27433 * 10 9 8 21 21 C 1.38102 * 119.92630 * 359.40347 * 20 10 9 22 22 C 1.47038 * 110.74687 * 301.38042 * 5 4 2 23 23 C 1.53004 * 109.24272 * 58.50665 * 22 5 4 24 24 C 1.53106 * 109.49186 * 63.22612 * 23 22 5 25 25 C 1.53202 * 109.02882 * 176.95025 * 24 23 22 26 26 C 1.53104 * 109.13887 * 303.09360 * 25 24 23 27 27 O 1.42900 * 109.44490 * 57.63654 * 26 25 24 28 28 C 1.42925 * 114.09702 * 298.83269 * 27 26 25 29 29 O 1.42933 * 109.41494 * 303.24621 * 23 22 5 30 30 H 1.08997 * 109.47510 * 299.88270 * 1 2 3 31 31 H 1.08997 * 109.47105 * 59.88480 * 1 2 3 32 32 H 1.08998 * 109.46960 * 179.88207 * 1 2 3 33 33 H 1.09006 * 109.49711 * 56.85630 * 4 2 1 34 34 H 1.08993 * 109.53290 * 296.76514 * 4 2 1 35 35 H 1.09002 * 109.46729 * 306.04909 * 6 5 4 36 36 H 1.08995 * 109.47463 * 186.04997 * 6 5 4 37 37 H 1.07997 * 119.96766 * 359.97438 * 8 7 6 38 38 H 1.07994 * 120.03267 * 180.02562 * 9 8 7 39 39 H 0.97000 * 120.00090 * 180.02562 * 15 14 12 40 40 H 1.07995 * 120.03419 * 179.72744 * 20 10 9 41 41 H 1.08006 * 119.96252 * 180.31758 * 21 20 10 42 42 H 1.08997 * 109.50940 * 178.44429 * 22 5 4 43 43 H 1.09004 * 109.50772 * 298.57869 * 22 5 4 44 44 H 1.09005 * 109.54490 * 296.81148 * 24 23 22 45 45 H 1.09000 * 109.54670 * 57.08284 * 24 23 22 46 46 H 1.08998 * 109.52289 * 62.99293 * 25 24 23 47 47 H 1.08999 * 109.52597 * 183.19424 * 25 24 23 48 48 H 1.08994 * 109.47002 * 177.62585 * 26 25 24 49 49 H 1.09004 * 109.47352 * 297.64086 * 26 25 24 50 50 H 1.09001 * 109.47889 * 301.06023 * 28 27 26 51 51 H 1.08997 * 109.47741 * 181.01931 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7240 1.2483 5 7 3.5093 -0.7887 1.2053 6 6 4.0438 -1.4274 2.4154 7 6 3.6220 -2.8738 2.4481 8 6 4.4220 -3.8392 1.8644 9 6 4.0385 -5.1656 1.8932 10 6 2.8479 -5.5295 2.5087 11 8 2.4685 -6.8325 2.5390 12 6 3.3447 -7.7366 2.0563 13 1 4.2630 -7.4054 1.5946 14 6 3.0691 -9.0917 2.1578 15 7 1.9531 -9.4953 2.7256 16 14 4.2827 -10.3442 1.4884 17 1 5.5864 -10.1902 2.1825 18 1 3.7582 -11.7141 1.7196 19 1 4.4683 -10.1240 0.0317 20 6 2.0437 -4.5569 3.0884 21 6 2.4360 -3.2330 3.0621 22 6 3.9646 -1.4888 -0.0050 23 6 3.4328 -0.7588 -1.2400 24 6 4.0236 0.6527 -1.2930 25 6 3.5450 1.3468 -2.5721 26 6 3.9473 0.5006 -3.7830 27 8 3.3889 -0.8085 -3.6552 28 6 3.8369 -1.5239 -2.5018 29 8 2.0077 -0.6764 -1.1662 30 1 -0.3634 0.5120 0.8910 31 1 -0.3633 0.5156 -0.8889 32 1 -0.3633 -1.0277 -0.0021 33 1 1.6332 -1.7344 1.2756 34 1 1.7269 -0.1805 2.1392 35 1 3.6572 -0.9162 3.2970 36 1 5.1320 -1.3664 2.4080 37 1 5.3476 -3.5556 1.3856 38 1 4.6639 -5.9191 1.4376 39 1 1.7605 -10.4434 2.7969 40 1 1.1152 -4.8362 3.5639 41 1 1.8136 -2.4768 3.5173 42 1 5.0542 -1.5010 -0.0303 43 1 3.5886 -2.5119 0.0032 44 1 3.6908 1.2202 -0.4238 45 1 5.1119 0.5926 -1.2960 46 1 2.4605 1.4522 -2.5454 47 1 4.0060 2.3317 -2.6465 48 1 3.5727 0.9681 -4.6935 49 1 5.0339 0.4292 -3.8315 50 1 4.9219 -1.6236 -2.5346 51 1 3.3809 -2.5138 -2.4883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796606468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:37 Heat of formation + Delta-G solvation = -86.767448 kcal Electronic energy + Delta-G solvation = -32144.837188 eV Core-core repulsion = 28009.935138 eV Total energy + Delta-G solvation = -4134.902050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.84714 -39.24902 -38.23549 -36.98697 -35.10177 -33.73836 -32.52284 -32.34254 -30.69960 -30.30408 -29.24530 -26.74602 -26.36073 -25.36258 -25.20705 -23.06024 -22.39840 -21.82053 -21.26387 -20.30141 -19.34510 -18.04512 -17.05559 -16.83694 -16.39112 -16.19873 -15.47593 -15.40094 -15.22058 -14.96879 -14.60531 -14.52998 -14.42210 -14.15776 -13.66963 -13.52555 -13.21590 -13.09188 -12.87956 -12.75602 -12.69629 -12.59197 -12.33178 -12.11570 -11.95941 -11.80616 -11.56892 -11.38667 -11.27902 -11.20727 -11.11205 -10.87178 -10.82092 -10.70966 -10.65900 -10.48285 -10.28884 -9.49976 -9.45941 -9.40214 -8.87577 -8.27970 -8.24727 -7.25354 -6.49999 -4.09224 2.13136 2.20025 3.10089 3.10756 3.13956 3.45057 3.82439 3.92387 3.96913 4.50169 4.55978 4.62689 4.69056 4.76929 4.88091 5.01132 5.03972 5.10518 5.16221 5.19718 5.21367 5.27558 5.30846 5.38520 5.42374 5.45433 5.52863 5.55322 5.62923 5.68345 5.72533 5.76219 5.78676 5.78839 5.92953 5.95321 6.03319 6.06690 6.10871 6.14242 6.20343 6.32548 6.61855 6.81217 6.91588 6.97192 7.02117 7.06478 7.18679 7.28825 7.31431 7.37528 7.74688 7.94464 8.95270 9.64288 10.67720 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.002863 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.370509 B = 9775.996742 C =10688.583140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.062 0.938 4 C 0.018 3.982 5 N -0.525 5.525 6 C 0.109 3.891 7 C -0.225 4.225 8 C -0.059 4.059 9 C -0.235 4.235 10 C 0.157 3.843 11 O -0.176 6.176 12 C -0.393 4.393 13 H 0.091 0.909 14 C 0.040 3.960 15 N -0.861 5.861 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.269 1.269 20 C -0.194 4.194 21 C -0.062 4.062 22 C 0.028 3.972 23 C 0.092 3.908 24 C -0.137 4.137 25 C -0.153 4.153 26 C 0.059 3.941 27 O -0.370 6.370 28 C 0.076 3.924 29 O -0.358 6.358 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.271 0.729 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.091 0.909 49 H 0.047 0.953 50 H 0.065 0.935 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 21.305 -7.037 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.080 0.920 4 C -0.111 4.111 5 N -0.247 5.247 6 C -0.018 4.018 7 C -0.227 4.227 8 C -0.078 4.078 9 C -0.254 4.254 10 C 0.103 3.897 11 O -0.079 6.079 12 C -0.470 4.470 13 H 0.109 0.891 14 C -0.164 4.164 15 N -0.496 5.496 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.194 1.194 20 C -0.213 4.213 21 C -0.081 4.081 22 C -0.101 4.101 23 C 0.052 3.948 24 C -0.175 4.175 25 C -0.190 4.190 26 C -0.018 4.018 27 O -0.288 6.288 28 C -0.001 4.001 29 O -0.277 6.277 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.065 0.935 50 H 0.083 0.917 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.680 21.297 -7.196 22.779 hybrid contribution 0.739 -1.331 0.259 1.544 sum 4.419 19.966 -6.938 21.594 Atomic orbital electron populations 1.21729 0.93038 1.03200 1.02192 1.22145 0.94570 0.95524 0.84793 0.91965 1.22862 0.88542 1.01156 0.98504 1.62708 1.08871 1.50958 1.02203 1.20948 0.99508 0.89449 0.91881 1.19877 0.98512 0.95789 1.08562 1.20593 0.97609 0.92360 0.97238 1.21148 0.99687 0.96463 1.08098 1.19392 0.92048 0.86000 0.92246 1.83979 1.41687 1.10837 1.71360 1.21279 1.01568 0.85547 1.38565 0.89121 1.25299 0.97481 0.96890 0.96751 1.70027 1.23019 1.16424 1.40099 0.85782 0.79423 0.78933 0.79329 1.19471 1.20202 1.19420 1.20207 1.01869 0.91772 1.07464 1.20481 0.95360 0.94595 0.97644 1.22675 1.00428 0.97458 0.89536 1.22091 0.82260 0.95329 0.95138 1.22058 1.00617 0.96253 0.98525 1.22139 1.02677 0.98904 0.95321 1.22579 0.97252 0.83745 0.98207 1.87996 1.69765 1.27546 1.43534 1.22549 0.98693 0.95716 0.83153 1.88081 1.19367 1.77980 1.42257 0.91163 0.91842 0.91634 0.92466 0.90276 0.90721 0.90722 0.87832 0.85622 0.91878 0.86630 0.87424 0.90239 0.92095 0.89917 0.91280 0.90707 0.91261 0.89127 0.93485 0.91653 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.57 37.16 0.36 -1.12 16 2 C 0.09 1.02 3.03 -26.68 -0.08 0.94 16 3 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 4 C 0.02 0.22 4.41 -3.71 -0.02 0.20 16 5 N -0.52 -6.41 4.37 -235.80 -1.03 -7.44 16 6 C 0.11 1.39 5.58 -4.98 -0.03 1.36 16 7 C -0.23 -3.60 4.02 -104.58 -0.42 -4.03 16 8 C -0.06 -1.03 7.91 -39.61 -0.31 -1.34 16 9 C -0.23 -4.98 9.17 -39.39 -0.36 -5.34 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 O -0.18 -4.99 9.76 0.04 0.00 -4.99 16 12 C -0.39 -10.93 9.49 30.89 0.29 -10.64 16 13 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 14 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 15 N -0.86 -25.17 13.67 55.48 0.76 -24.41 16 16 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 20 C -0.19 -4.04 9.99 -39.39 -0.39 -4.43 16 21 C -0.06 -1.06 8.02 -39.61 -0.32 -1.38 16 22 C 0.03 0.35 3.55 -3.75 -0.01 0.33 16 23 C 0.09 1.10 0.71 -90.56 -0.06 1.03 16 24 C -0.14 -1.37 4.40 -26.57 -0.12 -1.48 16 25 C -0.15 -1.39 5.98 -26.57 -0.16 -1.55 16 26 C 0.06 0.55 6.84 37.21 0.25 0.81 16 27 O -0.37 -4.70 10.70 -42.56 -0.46 -5.15 16 28 C 0.08 0.90 5.81 37.16 0.22 1.12 16 29 O -0.36 -4.91 9.34 -42.56 -0.40 -5.31 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.85 6.33 -51.93 -0.33 0.52 16 34 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 35 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 36 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.10 1.55 8.02 -52.49 -0.42 1.13 16 38 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 41 H 0.11 1.57 8.03 -52.48 -0.42 1.15 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.94 6.21 -51.93 -0.32 0.61 16 44 H 0.08 0.87 6.07 -51.93 -0.32 0.55 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.78 7.83 -51.93 -0.41 0.38 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -30.89 391.12 -9.94 -40.83 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -8.16 Total: 6.23 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -1.52 Total: -21.01 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: -0.27 Total: -31.85 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.85 Total: -15.46 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.89 -9.94 -40.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796606468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.938 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds