Wall clock time and date at job start Wed Apr 1 2020 04:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.54726 * 2 1 4 4 C 1.53095 * 109.50983 * 120.11343 * 2 1 3 5 5 N 1.47011 * 109.29675 * 176.79568 * 4 2 1 6 6 C 1.46902 * 111.00152 * 177.61023 * 5 4 2 7 7 C 1.50697 * 109.47218 * 66.04460 * 6 5 4 8 8 C 1.38306 * 119.92775 * 90.00152 * 7 6 5 9 9 C 1.38103 * 120.06789 * 179.97438 * 8 7 6 10 10 C 1.38880 * 119.92898 * 0.02562 * 9 8 7 11 11 O 1.35750 * 120.06482 * 180.02562 * 10 9 8 12 12 C 1.34833 * 117.00300 * 5.53566 * 11 10 9 13 13 H 1.07997 * 119.99571 * 354.93885 * 12 11 10 14 14 C 1.38652 * 120.00010 * 174.66892 * 12 11 10 15 15 N 1.31559 * 120.00071 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99847 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46932 * 60.00019 * 16 14 12 18 18 H 1.48497 * 109.46941 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47151 * 299.99988 * 16 14 12 20 20 C 1.38879 * 119.86441 * 0.27433 * 10 9 8 21 21 C 1.38102 * 119.92630 * 359.40347 * 20 10 9 22 22 C 1.47038 * 110.74687 * 301.38042 * 5 4 2 23 23 C 1.53004 * 109.24272 * 58.50665 * 22 5 4 24 24 C 1.53106 * 109.49186 * 63.22612 * 23 22 5 25 25 C 1.53202 * 109.02882 * 176.95025 * 24 23 22 26 26 C 1.53104 * 109.13887 * 303.09360 * 25 24 23 27 27 O 1.42900 * 109.44490 * 57.63654 * 26 25 24 28 28 C 1.42925 * 114.09702 * 298.83269 * 27 26 25 29 29 O 1.42933 * 109.41494 * 303.24621 * 23 22 5 30 30 H 1.08997 * 109.47510 * 299.88270 * 1 2 3 31 31 H 1.08997 * 109.47105 * 59.88480 * 1 2 3 32 32 H 1.08998 * 109.46960 * 179.88207 * 1 2 3 33 33 H 1.09006 * 109.49711 * 56.85630 * 4 2 1 34 34 H 1.08993 * 109.53290 * 296.76514 * 4 2 1 35 35 H 1.09002 * 109.46729 * 306.04909 * 6 5 4 36 36 H 1.08995 * 109.47463 * 186.04997 * 6 5 4 37 37 H 1.07997 * 119.96766 * 359.97438 * 8 7 6 38 38 H 1.07994 * 120.03267 * 180.02562 * 9 8 7 39 39 H 0.97000 * 120.00090 * 180.02562 * 15 14 12 40 40 H 1.07995 * 120.03419 * 179.72744 * 20 10 9 41 41 H 1.08006 * 119.96252 * 180.31758 * 21 20 10 42 42 H 1.08997 * 109.50940 * 178.44429 * 22 5 4 43 43 H 1.09004 * 109.50772 * 298.57869 * 22 5 4 44 44 H 1.09005 * 109.54490 * 296.81148 * 24 23 22 45 45 H 1.09000 * 109.54670 * 57.08284 * 24 23 22 46 46 H 1.08998 * 109.52289 * 62.99293 * 25 24 23 47 47 H 1.08999 * 109.52597 * 183.19424 * 25 24 23 48 48 H 1.08994 * 109.47002 * 177.62585 * 26 25 24 49 49 H 1.09004 * 109.47352 * 297.64086 * 26 25 24 50 50 H 1.09001 * 109.47889 * 301.06023 * 28 27 26 51 51 H 1.08997 * 109.47741 * 181.01931 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7240 1.2483 5 7 3.5093 -0.7887 1.2053 6 6 4.0438 -1.4274 2.4154 7 6 3.6220 -2.8738 2.4481 8 6 4.4220 -3.8392 1.8644 9 6 4.0385 -5.1656 1.8932 10 6 2.8479 -5.5295 2.5087 11 8 2.4685 -6.8325 2.5390 12 6 3.3447 -7.7366 2.0563 13 1 4.2630 -7.4054 1.5946 14 6 3.0691 -9.0917 2.1578 15 7 1.9531 -9.4953 2.7256 16 14 4.2827 -10.3442 1.4884 17 1 5.5864 -10.1902 2.1825 18 1 3.7582 -11.7141 1.7196 19 1 4.4683 -10.1240 0.0317 20 6 2.0437 -4.5569 3.0884 21 6 2.4360 -3.2330 3.0621 22 6 3.9646 -1.4888 -0.0050 23 6 3.4328 -0.7588 -1.2400 24 6 4.0236 0.6527 -1.2930 25 6 3.5450 1.3468 -2.5721 26 6 3.9473 0.5006 -3.7830 27 8 3.3889 -0.8085 -3.6552 28 6 3.8369 -1.5239 -2.5018 29 8 2.0077 -0.6764 -1.1662 30 1 -0.3634 0.5120 0.8910 31 1 -0.3633 0.5156 -0.8889 32 1 -0.3633 -1.0277 -0.0021 33 1 1.6332 -1.7344 1.2756 34 1 1.7269 -0.1805 2.1392 35 1 3.6572 -0.9162 3.2970 36 1 5.1320 -1.3664 2.4080 37 1 5.3476 -3.5556 1.3856 38 1 4.6639 -5.9191 1.4376 39 1 1.7605 -10.4434 2.7969 40 1 1.1152 -4.8362 3.5639 41 1 1.8136 -2.4768 3.5173 42 1 5.0542 -1.5010 -0.0303 43 1 3.5886 -2.5119 0.0032 44 1 3.6908 1.2202 -0.4238 45 1 5.1119 0.5926 -1.2960 46 1 2.4605 1.4522 -2.5454 47 1 4.0060 2.3317 -2.6465 48 1 3.5727 0.9681 -4.6935 49 1 5.0339 0.4292 -3.8315 50 1 4.9219 -1.6236 -2.5346 51 1 3.3809 -2.5138 -2.4883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796606468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:36 Heat of formation + Delta-G solvation = -106.913620 kcal Electronic energy + Delta-G solvation = -32145.710792 eV Core-core repulsion = 28009.935138 eV Total energy + Delta-G solvation = -4135.775654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.82092 -40.80554 -39.37311 -38.38386 -36.36475 -34.61503 -34.31030 -33.32265 -31.92183 -31.81753 -30.44968 -27.90045 -27.60975 -26.89597 -26.18867 -24.10102 -23.73847 -23.04762 -22.35568 -21.56234 -20.26799 -19.87479 -18.85598 -17.73316 -17.34867 -17.14854 -16.67571 -16.49449 -16.32389 -16.15622 -16.07777 -15.78284 -15.70249 -15.50702 -15.19828 -14.95160 -14.54764 -14.26794 -14.05276 -13.88386 -13.68423 -13.65142 -13.52021 -13.27933 -12.96477 -12.90358 -12.83002 -12.69790 -12.50971 -12.43182 -12.38083 -12.18942 -12.14809 -11.99093 -11.75601 -11.57264 -11.21919 -11.13187 -10.81501 -10.41476 -10.33321 -9.80839 -9.37859 -8.94702 -8.50603 -6.19347 0.54222 0.62492 1.32103 1.42846 1.48609 2.14900 2.57695 2.72957 2.92307 3.07584 3.17207 3.47723 3.69778 3.78758 3.81861 3.91661 4.00974 4.04573 4.08828 4.14452 4.19852 4.26662 4.32871 4.37556 4.43238 4.48497 4.53393 4.55302 4.65816 4.71850 4.72253 4.75632 4.81516 4.84269 4.89756 4.94093 4.98840 5.06471 5.08256 5.10507 5.13923 5.22496 5.24801 5.33598 5.37617 5.51063 5.66538 5.68099 5.97859 5.98747 6.01770 6.17960 6.22990 6.41185 6.93796 7.74250 8.72446 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.002863 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.370509 B = 9775.996742 C =10688.583140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.076 0.924 4 C 0.017 3.983 5 N -0.511 5.511 6 C 0.110 3.890 7 C -0.195 4.195 8 C -0.054 4.054 9 C -0.245 4.245 10 C 0.116 3.884 11 O -0.233 6.233 12 C -0.415 4.415 13 H 0.101 0.899 14 C -0.022 4.022 15 N -0.921 5.921 16 Si 1.018 2.982 17 H -0.256 1.256 18 H -0.271 1.271 19 H -0.257 1.257 20 C -0.209 4.209 21 C -0.054 4.054 22 C 0.029 3.971 23 C 0.090 3.910 24 C -0.130 4.130 25 C -0.148 4.148 26 C 0.052 3.948 27 O -0.397 6.397 28 C 0.073 3.927 29 O -0.385 6.385 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.273 0.727 40 H 0.108 0.892 41 H 0.143 0.857 42 H 0.099 0.901 43 H 0.027 0.973 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.057 0.943 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 25.198 -7.460 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.094 0.906 4 C -0.111 4.111 5 N -0.233 5.233 6 C -0.017 4.017 7 C -0.197 4.197 8 C -0.073 4.073 9 C -0.264 4.264 10 C 0.065 3.935 11 O -0.140 6.140 12 C -0.491 4.491 13 H 0.118 0.882 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.837 3.163 17 H -0.180 1.180 18 H -0.195 1.195 19 H -0.182 1.182 20 C -0.229 4.229 21 C -0.073 4.073 22 C -0.100 4.100 23 C 0.050 3.950 24 C -0.167 4.167 25 C -0.185 4.185 26 C -0.024 4.024 27 O -0.316 6.316 28 C -0.004 4.004 29 O -0.305 6.305 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.126 0.874 41 H 0.161 0.839 42 H 0.117 0.883 43 H 0.046 0.954 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.076 0.924 47 H 0.112 0.888 48 H 0.120 0.880 49 H 0.083 0.917 50 H 0.105 0.895 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.283 25.267 -7.624 27.129 hybrid contribution -0.078 -2.119 0.357 2.150 sum 6.204 23.148 -7.268 25.043 Atomic orbital electron populations 1.21748 0.92431 1.02254 1.03506 1.22261 0.95137 0.95798 0.83876 0.90611 1.22919 0.88409 0.99856 0.99902 1.62757 1.08773 1.49954 1.01797 1.21146 1.01052 0.86474 0.93016 1.20460 0.96780 0.97875 1.04594 1.20958 0.98937 0.90814 0.96595 1.21252 0.98838 0.98217 1.08077 1.19944 0.94057 0.85252 0.94251 1.83942 1.43238 1.12659 1.74140 1.21775 1.02103 0.86304 1.38956 0.88180 1.26605 0.99581 0.98834 0.96956 1.70178 1.25727 1.16872 1.43116 0.84663 0.76919 0.75709 0.79037 1.18008 1.19539 1.18166 1.20456 1.01620 0.93073 1.07706 1.20878 0.96043 0.93500 0.96832 1.22689 1.01452 0.95693 0.90140 1.22172 0.81587 0.96629 0.94587 1.22011 1.01326 0.94557 0.98839 1.22102 1.01743 0.99931 0.94736 1.22812 0.98291 0.82376 0.98940 1.87958 1.70659 1.29193 1.43777 1.22568 0.99706 0.94811 0.83317 1.88070 1.20649 1.78491 1.43256 0.88821 0.91603 0.93653 0.95475 0.88058 0.88487 0.88554 0.84418 0.86579 0.91784 0.87386 0.83949 0.88300 0.95443 0.90016 0.89749 0.92437 0.88847 0.88041 0.91730 0.89485 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.57 71.98 0.69 -2.01 16 2 C 0.09 1.83 3.03 30.62 0.09 1.92 16 3 H 0.08 1.41 6.43 -2.38 -0.02 1.39 16 4 C 0.02 0.38 4.41 86.31 0.38 0.76 16 5 N -0.51 -10.44 4.37 -899.92 -3.93 -14.37 16 6 C 0.11 2.26 5.58 85.56 0.48 2.74 16 7 C -0.19 -5.69 4.02 -19.84 -0.08 -5.77 16 8 C -0.05 -1.80 7.91 22.25 0.18 -1.63 16 9 C -0.24 -10.63 9.17 22.39 0.21 -10.42 16 10 C 0.12 5.82 6.65 22.58 0.15 5.97 16 11 O -0.23 -14.30 9.76 -22.77 -0.22 -14.52 16 12 C -0.42 -24.53 9.49 67.92 0.64 -23.88 16 13 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 14 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 15 N -0.92 -57.27 13.67 21.61 0.30 -56.97 16 16 Si 1.02 43.21 29.55 68.60 2.03 45.24 16 17 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 20 C -0.21 -9.02 9.99 22.39 0.22 -8.80 16 21 C -0.05 -1.77 8.02 22.25 0.18 -1.59 16 22 C 0.03 0.64 3.55 86.28 0.31 0.95 16 23 C 0.09 1.96 0.71 -10.76 -0.01 1.95 16 24 C -0.13 -2.12 4.40 30.70 0.13 -1.99 16 25 C -0.15 -2.23 5.98 30.70 0.18 -2.05 16 26 C 0.05 0.84 6.84 72.02 0.49 1.34 16 27 O -0.40 -9.64 10.70 -141.98 -1.52 -11.16 16 28 C 0.07 1.65 5.81 71.98 0.42 2.07 16 29 O -0.38 -10.18 9.34 -141.98 -1.33 -11.50 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.03 0.76 6.33 -2.38 -0.02 0.75 16 34 H 0.10 1.76 8.12 -2.39 -0.02 1.74 16 35 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 36 H 0.10 1.70 8.08 -2.39 -0.02 1.68 16 37 H 0.14 3.62 8.02 -2.91 -0.02 3.60 16 38 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.14 3.68 8.03 -2.91 -0.02 3.66 16 42 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.03 0.80 6.21 -2.39 -0.01 0.79 16 44 H 0.08 1.37 6.07 -2.38 -0.01 1.36 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 46 H 0.06 1.08 7.83 -2.39 -0.02 1.06 16 47 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -74.43 391.12 1.37 -73.05 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 0.92 Total: 31.49 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 5.13 Total: -41.25 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -3.64 Total: -71.34 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -3.07 Total: -37.19 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -74.43 1.37 -73.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796606468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.860 kcal (2) G-P(sol) polarization free energy of solvation -74.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds