Wall clock time and date at job start Wed Apr 1 2020 04:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.50810 * 2 1 4 4 C 1.53092 * 109.50715 * 239.91092 * 2 1 3 5 5 N 1.47021 * 109.25818 * 183.17090 * 4 2 1 6 6 C 1.46899 * 110.99710 * 182.39239 * 5 4 2 7 7 C 1.52994 * 109.47402 * 76.09214 * 6 5 4 8 8 O 1.45201 * 109.47055 * 65.09405 * 7 6 5 9 9 C 1.34233 * 116.99940 * 180.02562 * 8 7 6 10 10 O 1.20828 * 119.99826 * 0.02562 * 9 8 7 11 11 C 1.50694 * 119.99918 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.47093 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46649 * 304.99408 * 12 11 9 14 14 C 1.50695 * 109.47165 * 64.99696 * 12 11 9 15 15 H 1.08002 * 120.00352 * 25.58786 * 14 12 11 16 16 C 1.37879 * 119.99964 * 205.58486 * 14 12 11 17 17 N 1.31514 * 119.99600 * 5.28853 * 16 14 12 18 18 Si 1.86804 * 120.00001 * 185.28101 * 16 14 12 19 19 H 1.48502 * 109.46774 * 90.00496 * 18 16 14 20 20 H 1.48502 * 109.46880 * 210.00360 * 18 16 14 21 21 H 1.48488 * 109.47042 * 330.00347 * 18 16 14 22 22 C 1.50701 * 109.46921 * 184.99658 * 12 11 9 23 23 C 1.38232 * 120.00331 * 303.66913 * 22 12 11 24 24 C 1.38238 * 119.99911 * 179.79034 * 23 22 12 25 25 C 1.38231 * 120.00053 * 0.44093 * 24 23 22 26 26 C 1.38234 * 120.00150 * 359.81031 * 25 24 23 27 27 C 1.38240 * 120.00047 * 359.97438 * 26 25 24 28 28 C 1.47008 * 110.74929 * 58.61734 * 5 4 2 29 29 C 1.53103 * 109.26067 * 301.38185 * 28 5 4 30 30 O 1.43012 * 109.25410 * 56.85052 * 29 28 5 31 31 H 1.08994 * 109.47108 * 180.09150 * 1 2 3 32 32 H 1.09006 * 109.47563 * 300.08938 * 1 2 3 33 33 H 1.08998 * 109.47231 * 60.09103 * 1 2 3 34 34 H 1.09000 * 109.50522 * 63.23824 * 4 2 1 35 35 H 1.09002 * 109.50713 * 303.10382 * 4 2 1 36 36 H 1.09002 * 109.47426 * 316.08589 * 6 5 4 37 37 H 1.09005 * 109.46586 * 196.09206 * 6 5 4 38 38 H 1.08996 * 109.47202 * 305.09726 * 7 6 5 39 39 H 1.09001 * 109.47665 * 185.09803 * 7 6 5 40 40 H 1.09002 * 109.47595 * 60.00098 * 11 9 8 41 41 H 1.08999 * 109.47030 * 299.99850 * 11 9 8 42 42 H 0.97009 * 119.99479 * 179.97438 * 17 16 14 43 43 H 1.07999 * 120.00021 * 359.97438 * 23 22 12 44 44 H 1.07997 * 119.99731 * 180.27086 * 24 23 22 45 45 H 1.07999 * 120.00152 * 179.83475 * 25 24 23 46 46 H 1.07999 * 120.00171 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.00314 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.51405 * 61.31827 * 28 5 4 49 49 H 1.09005 * 109.50686 * 181.44964 * 28 5 4 50 50 H 1.08996 * 109.50161 * 296.91675 * 29 28 5 51 51 H 1.08995 * 109.54101 * 176.80888 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0411 -0.7235 -1.2486 5 7 3.5093 -0.7870 -1.2052 6 6 4.0446 -1.4250 -2.4153 7 6 3.9807 -0.4384 -3.5829 8 8 4.8653 0.6822 -3.3185 9 6 4.9256 1.6446 -4.2524 10 8 4.2609 1.5537 -5.2572 11 6 5.8224 2.8382 -4.0475 12 6 5.7046 3.7769 -5.2500 13 1 5.9190 3.2242 -6.1647 14 6 4.3065 4.3353 -5.3163 15 1 3.7108 4.4079 -4.4183 16 6 3.7878 4.7536 -6.5234 17 7 4.4713 4.5700 -7.6318 18 14 2.1140 5.5808 -6.5843 19 1 2.2814 7.0484 -6.4304 20 1 1.4656 5.2905 -7.8883 21 1 1.2647 5.0613 -5.4826 22 6 6.6906 4.9072 -5.1033 23 6 6.6645 5.7051 -3.9748 24 6 7.5717 6.7391 -3.8383 25 6 8.4991 6.9810 -4.8345 26 6 8.5218 6.1863 -5.9654 27 6 7.6175 5.1495 -6.0999 28 6 3.9648 -1.4868 0.0048 29 6 3.4343 -0.7557 1.2409 30 8 2.0084 -0.6760 1.1660 31 1 -0.3633 -1.0276 0.0016 32 1 -0.3634 0.5152 0.8892 33 1 -0.3633 0.5124 -0.8908 34 1 1.7266 -0.1791 -2.1390 35 1 1.6338 -1.7341 -1.2761 36 1 3.4517 -2.3082 -2.6531 37 1 5.0803 -1.7182 -2.2436 38 1 2.9591 -0.0758 -3.6967 39 1 4.2927 -0.9392 -4.4994 40 1 6.8550 2.5039 -3.9469 41 1 5.5220 3.3673 -3.1432 42 1 4.1062 4.8639 -8.4811 43 1 5.9373 5.5187 -3.1984 44 1 7.5542 7.3597 -2.9547 45 1 9.2061 7.7905 -4.7291 46 1 9.2461 6.3755 -6.7439 47 1 7.6349 4.5289 -6.9836 48 1 3.5882 -2.5096 -0.0026 49 1 5.0545 -1.4997 0.0293 50 1 3.8537 0.2497 1.2769 51 1 3.7216 -1.3022 2.1391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800222955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:26 Heat of formation + Delta-G solvation = -105.947482 kcal Electronic energy + Delta-G solvation = -30901.725968 eV Core-core repulsion = 26765.992209 eV Total energy + Delta-G solvation = -4135.733759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.00575 -39.50021 -38.33100 -36.54450 -35.36334 -34.00227 -32.99245 -31.54638 -30.65240 -29.99498 -28.93587 -27.97539 -26.10029 -25.48951 -23.23175 -22.81145 -21.80774 -21.54020 -20.68305 -20.33780 -19.20986 -17.00895 -16.82489 -16.57288 -16.52942 -15.89428 -15.70056 -15.44559 -15.26423 -15.08488 -14.61096 -14.37239 -14.17864 -14.05215 -13.82098 -13.23595 -12.87301 -12.75576 -12.67619 -12.47720 -12.38300 -12.36198 -12.05648 -11.98244 -11.80506 -11.64467 -11.58968 -11.35083 -11.04316 -10.90413 -10.73724 -10.64255 -10.60207 -10.25550 -10.06855 -10.01691 -9.77850 -9.52270 -9.40518 -9.10044 -8.53902 -8.38499 -8.02988 -7.62572 -5.97662 -3.97648 2.30211 2.34956 3.21434 3.34608 3.35178 3.40854 3.43372 3.49606 3.62230 4.47994 4.56163 4.72446 4.73532 4.75978 4.92259 4.97844 5.09230 5.12129 5.23392 5.26252 5.35205 5.39049 5.39700 5.45609 5.56871 5.58688 5.67618 5.71436 5.73135 5.75573 5.85041 5.86114 5.91114 5.96885 6.09343 6.15641 6.28854 6.42423 6.52685 6.69321 6.75846 6.78594 6.91799 7.01449 7.02013 7.22661 7.32797 7.42242 7.53242 7.84954 7.93475 8.02806 8.31293 8.77109 9.01048 9.63663 11.11962 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.002845 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.758351 B = 9840.146119 C =10776.141489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 H 0.070 0.930 4 C 0.021 3.979 5 N -0.529 5.529 6 C 0.058 3.942 7 C 0.073 3.927 8 O -0.358 6.358 9 C 0.454 3.546 10 O -0.472 6.472 11 C -0.094 4.094 12 C 0.077 3.923 13 H 0.070 0.930 14 C -0.495 4.495 15 H 0.052 0.948 16 C 0.076 3.924 17 N -0.880 5.880 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.022 4.022 23 C -0.118 4.118 24 C -0.132 4.132 25 C -0.154 4.154 26 C -0.129 4.129 27 C -0.112 4.112 28 C 0.020 3.980 29 C 0.065 3.935 30 O -0.386 6.386 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.260 0.740 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.116 0.884 48 H 0.039 0.961 49 H 0.088 0.912 50 H 0.062 0.938 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 -10.468 13.772 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 H 0.088 0.912 4 C -0.107 4.107 5 N -0.254 5.254 6 C -0.070 4.070 7 C -0.002 4.002 8 O -0.277 6.277 9 C 0.295 3.705 10 O -0.355 6.355 11 C -0.131 4.131 12 C 0.058 3.942 13 H 0.088 0.912 14 C -0.532 4.532 15 H 0.071 0.929 16 C -0.127 4.127 17 N -0.517 5.517 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.023 4.023 23 C -0.136 4.136 24 C -0.150 4.150 25 C -0.173 4.173 26 C -0.147 4.147 27 C -0.130 4.130 28 C -0.109 4.109 29 C -0.012 4.012 30 O -0.305 6.305 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.134 0.866 48 H 0.058 0.942 49 H 0.106 0.894 50 H 0.080 0.920 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.694 -10.099 13.393 16.788 hybrid contribution -1.205 -0.141 -0.608 1.357 sum -0.511 -10.240 12.785 16.388 Atomic orbital electron populations 1.21753 0.92792 1.02778 1.02913 1.22157 0.94780 0.95953 0.84003 0.91153 1.22909 0.87835 1.00078 0.99893 1.62127 1.08675 1.52840 1.01791 1.22200 1.01092 0.94249 0.89464 1.22799 0.94302 0.86378 0.96675 1.86578 1.61419 1.31128 1.48576 1.23972 0.82293 0.83245 0.80959 1.90715 1.40542 1.75968 1.28309 1.21555 0.96450 0.91810 1.03328 1.17885 0.93779 0.89228 0.93270 0.91167 1.20721 0.96877 1.41824 0.93797 0.92930 1.24824 0.96903 0.95355 0.95661 1.69907 1.38196 1.45666 0.97892 0.86685 0.84701 0.79770 0.77389 1.20757 1.21316 1.20025 1.20608 0.92032 0.97800 0.91840 1.20947 0.98235 0.95774 0.98678 1.20959 0.96900 0.98473 0.98651 1.20802 1.00437 1.00552 0.95469 1.20996 0.99607 0.96662 0.97444 1.21086 0.94904 0.98057 0.98974 1.22796 1.01265 0.95957 0.90841 1.22634 0.81023 1.00644 0.96946 1.87957 1.21063 1.78472 1.43003 0.92029 0.91528 0.90697 0.89379 0.94049 0.92667 0.89573 0.91693 0.91298 0.90503 0.89356 0.93069 0.86899 0.87620 0.87797 0.87618 0.86565 0.94250 0.89396 0.92002 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.57 37.15 0.36 -0.97 16 2 C 0.09 0.98 3.42 -26.69 -0.09 0.89 16 3 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 4 C 0.02 0.23 4.75 -3.71 -0.02 0.22 16 5 N -0.53 -6.16 4.61 -234.31 -1.08 -7.24 16 6 C 0.06 0.63 5.39 -3.83 -0.02 0.61 16 7 C 0.07 1.05 5.66 37.15 0.21 1.26 16 8 O -0.36 -6.23 10.18 -39.26 -0.40 -6.63 16 9 C 0.45 9.35 7.71 36.00 0.28 9.62 16 10 O -0.47 -11.51 14.73 -18.75 -0.28 -11.78 16 11 C -0.09 -1.85 4.96 -27.88 -0.14 -1.99 16 12 C 0.08 1.82 1.62 -92.92 -0.15 1.67 16 13 H 0.07 1.89 7.07 -51.93 -0.37 1.52 16 14 C -0.49 -13.16 6.60 -34.44 -0.23 -13.38 16 15 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 16 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 17 N -0.88 -25.33 12.91 55.43 0.72 -24.61 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 23 C -0.12 -2.36 8.92 -39.58 -0.35 -2.72 16 24 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 25 C -0.15 -2.69 10.05 -39.59 -0.40 -3.09 16 26 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 27 C -0.11 -2.38 9.67 -39.58 -0.38 -2.76 16 28 C 0.02 0.19 5.60 -3.71 -0.02 0.17 16 29 C 0.06 0.62 7.01 37.21 0.26 0.88 16 30 O -0.39 -4.47 10.47 -35.23 -0.37 -4.84 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.04 6.76 -51.93 -0.35 0.68 16 35 H 0.04 0.43 8.13 -51.93 -0.42 0.01 16 36 H 0.06 0.51 7.98 -51.93 -0.41 0.10 16 37 H 0.09 0.87 7.86 -51.93 -0.41 0.46 16 38 H 0.06 0.99 6.76 -51.93 -0.35 0.64 16 39 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.09 1.64 7.38 -51.93 -0.38 1.26 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.11 2.15 7.43 -52.49 -0.39 1.76 16 44 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 47 H 0.12 2.53 7.95 -52.49 -0.42 2.11 16 48 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.09 0.74 8.02 -51.93 -0.42 0.32 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 413.92 15.07 6.24 6.24 Total: -1.00 -31.78 413.92 -10.82 -42.60 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.54 Total: 3.51 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.09 Total: -14.11 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: -0.36 Total: -31.86 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -1.04 Total: -23.25 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.78 -10.82 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800222955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.344 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds