Wall clock time and date at job start Wed Apr 1 2020 04:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.50807 * 2 1 4 4 C 1.53103 * 109.50533 * 120.08614 * 2 1 3 5 5 N 1.47011 * 109.25418 * 176.82754 * 4 2 1 6 6 C 1.46900 * 110.99793 * 177.60875 * 5 4 2 7 7 C 1.53001 * 109.47302 * 170.00163 * 6 5 4 8 8 O 1.45198 * 109.47188 * 64.99847 * 7 6 5 9 9 C 1.34232 * 117.00081 * 180.02562 * 8 7 6 10 10 O 1.20828 * 120.00024 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00043 * 179.97438 * 9 8 7 12 12 C 1.53004 * 109.47131 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46560 * 55.00310 * 12 11 9 14 14 C 1.50697 * 109.47380 * 295.00358 * 12 11 9 15 15 H 1.08000 * 119.99866 * 121.36442 * 14 12 11 16 16 C 1.37870 * 119.99934 * 301.36846 * 14 12 11 17 17 N 1.31513 * 120.00354 * 6.17183 * 16 14 12 18 18 Si 1.86804 * 120.00061 * 186.17455 * 16 14 12 19 19 H 1.48497 * 109.47343 * 89.99641 * 18 16 14 20 20 H 1.48504 * 109.47281 * 209.99689 * 18 16 14 21 21 H 1.48499 * 109.47275 * 329.99666 * 18 16 14 22 22 C 1.50697 * 109.47288 * 175.00201 * 12 11 9 23 23 C 1.38231 * 120.00251 * 211.37695 * 22 12 11 24 24 C 1.38232 * 120.00539 * 179.81196 * 23 22 12 25 25 C 1.38240 * 119.99207 * 0.38821 * 24 23 22 26 26 C 1.38237 * 120.00518 * 359.86433 * 25 24 23 27 27 C 1.38226 * 119.99639 * 359.94802 * 26 25 24 28 28 C 1.47011 * 110.75766 * 301.38193 * 5 4 2 29 29 C 1.53103 * 109.25534 * 58.62016 * 28 5 4 30 30 O 1.43016 * 109.25735 * 303.15218 * 29 28 5 31 31 H 1.08995 * 109.46681 * 299.91024 * 1 2 3 32 32 H 1.08998 * 109.46797 * 59.91128 * 1 2 3 33 33 H 1.08999 * 109.46802 * 179.91604 * 1 2 3 34 34 H 1.09002 * 109.50696 * 56.89415 * 4 2 1 35 35 H 1.09001 * 109.54379 * 296.77889 * 4 2 1 36 36 H 1.08998 * 109.47643 * 50.00298 * 6 5 4 37 37 H 1.09003 * 109.47223 * 289.99893 * 6 5 4 38 38 H 1.09001 * 109.47365 * 304.99864 * 7 6 5 39 39 H 1.09001 * 109.47086 * 184.99865 * 7 6 5 40 40 H 1.08993 * 109.47243 * 300.00403 * 11 9 8 41 41 H 1.08997 * 109.46754 * 60.00452 * 11 9 8 42 42 H 0.97002 * 120.00400 * 180.02562 * 17 16 14 43 43 H 1.08008 * 119.99925 * 359.97438 * 23 22 12 44 44 H 1.07996 * 120.00516 * 180.23049 * 24 23 22 45 45 H 1.08004 * 119.99588 * 179.83493 * 25 24 23 46 46 H 1.08002 * 120.00159 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.00039 * 180.02562 * 27 26 25 48 48 H 1.08998 * 109.51282 * 178.55288 * 28 5 4 49 49 H 1.08997 * 109.50584 * 298.69028 * 28 5 4 50 50 H 1.08999 * 109.50888 * 183.22172 * 29 28 5 51 51 H 1.08999 * 109.50555 * 63.08568 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7235 1.2487 5 7 3.5093 -0.7870 1.2053 6 6 4.0446 -1.4250 2.4154 7 6 5.5383 -1.6991 2.2293 8 8 6.2507 -0.4393 2.1120 9 6 7.5806 -0.5047 1.9421 10 8 8.1312 -1.5791 1.8926 11 6 8.3868 0.7618 1.8120 12 6 9.8645 0.4093 1.6297 13 1 9.9749 -0.2653 0.7807 14 6 10.3779 -0.2638 2.8764 15 1 10.7954 -1.2583 2.8202 16 6 10.3146 0.3898 4.0887 17 7 9.6980 1.5478 4.1800 18 14 11.1048 -0.3695 5.6015 19 1 12.5127 0.0907 5.7084 20 1 10.3546 0.0470 6.8136 21 1 11.0753 -1.8496 5.4854 22 6 10.6537 1.6680 1.3772 23 6 11.7821 1.6280 0.5797 24 6 12.5039 2.7833 0.3448 25 6 12.1018 3.9771 0.9141 26 6 10.9764 4.0162 1.7158 27 6 10.2525 2.8616 1.9475 28 6 3.9649 -1.4869 -0.0046 29 6 3.4345 -0.7557 -1.2408 30 8 2.0085 -0.6760 -1.1659 31 1 -0.3632 0.5124 0.8908 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.6338 -1.7341 1.2763 35 1 1.7267 -0.1797 2.1396 36 1 3.5221 -2.3651 2.5921 37 1 3.9004 -0.7630 3.2693 38 1 5.6898 -2.2877 1.3245 39 1 5.9163 -2.2515 3.0896 40 1 8.0384 1.3271 0.9478 41 1 8.2657 1.3636 2.7127 42 1 9.6538 2.0078 5.0329 43 1 12.0983 0.6945 0.1379 44 1 13.3834 2.7527 -0.2813 45 1 12.6672 4.8793 0.7328 46 1 10.6625 4.9488 2.1609 47 1 9.3729 2.8922 2.5736 48 1 5.0546 -1.4998 -0.0292 49 1 3.5882 -2.5096 0.0028 50 1 3.7217 -1.3030 -2.1386 51 1 3.8538 0.2497 -1.2768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800222956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:29 Heat of formation + Delta-G solvation = -95.565676 kcal Electronic energy + Delta-G solvation = -31167.684633 eV Core-core repulsion = 27032.401063 eV Total energy + Delta-G solvation = -4135.283570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.05371 -39.41714 -38.25380 -36.58412 -35.28885 -34.22656 -33.02778 -31.17433 -30.35847 -29.83803 -28.76827 -28.30854 -26.13305 -25.07719 -23.80189 -22.83614 -21.62442 -21.28739 -20.64847 -20.14471 -19.22626 -16.95330 -16.87564 -16.59104 -16.29458 -15.93201 -15.63019 -15.25416 -15.09358 -15.03028 -14.87405 -14.59937 -13.93666 -13.88564 -13.73146 -13.16566 -12.94969 -12.76985 -12.71042 -12.49895 -12.32098 -12.19426 -11.94813 -11.83838 -11.64682 -11.49456 -11.42588 -11.34872 -10.96432 -10.95610 -10.81785 -10.60025 -10.46710 -10.25070 -10.01844 -9.95659 -9.75111 -9.45652 -9.34441 -9.08601 -8.52608 -8.47244 -7.83168 -7.48403 -6.05900 -4.15637 2.45408 2.54269 3.27306 3.33145 3.34431 3.38790 3.41759 3.56054 3.67356 4.37843 4.55776 4.74606 4.79191 4.93426 4.93983 5.01638 5.07672 5.14836 5.17832 5.23012 5.31358 5.37259 5.42534 5.46233 5.54391 5.67220 5.75075 5.78701 5.79014 5.87049 5.88547 5.90129 5.97561 6.08574 6.33755 6.43359 6.52953 6.69179 6.74129 6.79903 6.80786 7.01442 7.03845 7.09753 7.24449 7.29683 7.45965 7.50141 7.68633 7.90616 8.05428 8.14595 8.26929 8.79771 8.89387 9.49012 10.88741 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.002767 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.086136 B =10117.917874 C =11376.753931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.069 0.931 4 C 0.024 3.976 5 N -0.528 5.528 6 C 0.058 3.942 7 C 0.062 3.938 8 O -0.355 6.355 9 C 0.468 3.532 10 O -0.505 6.505 11 C -0.113 4.113 12 C 0.086 3.914 13 H 0.038 0.962 14 C -0.480 4.480 15 H 0.062 0.938 16 C 0.061 3.939 17 N -0.887 5.887 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.032 4.032 23 C -0.130 4.130 24 C -0.142 4.142 25 C -0.152 4.152 26 C -0.143 4.143 27 C -0.076 4.076 28 C 0.011 3.989 29 C 0.066 3.934 30 O -0.386 6.386 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.146 0.854 42 H 0.264 0.736 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.150 0.850 48 H 0.093 0.907 49 H 0.040 0.960 50 H 0.098 0.902 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.228 -0.635 -6.364 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 H 0.087 0.913 4 C -0.104 4.104 5 N -0.253 5.253 6 C -0.069 4.069 7 C -0.013 4.013 8 O -0.273 6.273 9 C 0.312 3.688 10 O -0.391 6.391 11 C -0.150 4.150 12 C 0.067 3.933 13 H 0.056 0.944 14 C -0.517 4.517 15 H 0.080 0.920 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.033 4.033 23 C -0.148 4.148 24 C -0.160 4.160 25 C -0.170 4.170 26 C -0.161 4.161 27 C -0.094 4.094 28 C -0.117 4.117 29 C -0.011 4.011 30 O -0.305 6.305 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.163 0.837 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.167 0.833 48 H 0.112 0.888 49 H 0.058 0.942 50 H 0.116 0.884 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.059 -0.474 -6.366 15.440 hybrid contribution 0.631 -1.281 1.397 1.998 sum -13.428 -1.755 -4.969 14.425 Atomic orbital electron populations 1.21745 0.92930 1.02794 1.02667 1.22150 0.94611 0.95908 0.84306 0.91300 1.22835 0.87970 1.00055 0.99577 1.62208 1.08233 1.52935 1.01921 1.22224 0.92894 0.98237 0.93548 1.22936 0.90399 0.85921 1.02072 1.86652 1.22642 1.33994 1.83981 1.24325 0.79575 0.93254 0.71652 1.90569 1.70995 1.31585 1.45935 1.21850 0.95421 0.92247 1.05502 1.17690 0.88338 0.90380 0.96887 0.94369 1.21030 1.38985 1.00925 0.90798 0.92009 1.24902 0.95251 0.94878 0.98874 1.69518 1.42476 1.15298 1.25371 0.86551 0.79535 0.79627 0.82188 1.20649 1.21244 1.19964 1.20264 0.95147 0.95482 0.92403 1.20903 0.96389 0.97122 1.00412 1.20802 0.99870 0.93452 1.01923 1.20804 0.98305 0.97048 1.00868 1.21091 0.96745 0.98354 0.99932 1.21644 1.01394 0.90754 0.95639 1.22920 1.02030 0.95937 0.90834 1.22651 0.80582 1.00769 0.97101 1.87956 1.21341 1.78417 1.42799 0.90913 0.91573 0.92024 0.94174 0.89584 0.93048 0.89108 0.91592 0.91109 0.91847 0.83691 0.92572 0.87591 0.88001 0.88211 0.87933 0.83309 0.88841 0.94182 0.88439 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.57 37.16 0.36 -0.73 16 2 C 0.09 0.89 3.42 -26.68 -0.09 0.79 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.02 0.24 4.91 -3.71 -0.02 0.22 16 5 N -0.53 -6.47 4.83 -234.31 -1.13 -7.60 16 6 C 0.06 0.70 5.67 -3.82 -0.02 0.68 16 7 C 0.06 0.93 4.95 37.16 0.18 1.11 16 8 O -0.35 -6.65 10.17 -39.26 -0.40 -7.05 16 9 C 0.47 10.14 7.71 36.01 0.28 10.42 16 10 O -0.50 -12.09 14.74 -18.75 -0.28 -12.37 16 11 C -0.11 -2.46 4.33 -27.88 -0.12 -2.58 16 12 C 0.09 2.03 1.98 -92.92 -0.18 1.85 16 13 H 0.04 0.91 7.89 -51.93 -0.41 0.50 16 14 C -0.48 -12.65 7.27 -34.44 -0.25 -12.90 16 15 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 16 C 0.06 1.58 5.14 -17.82 -0.09 1.49 16 17 N -0.89 -22.36 7.74 55.43 0.43 -21.93 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.03 -0.73 4.68 -104.62 -0.49 -1.22 16 23 C -0.13 -2.72 9.70 -39.59 -0.38 -3.11 16 24 C -0.14 -2.69 10.05 -39.58 -0.40 -3.09 16 25 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 26 C -0.14 -2.82 10.05 -39.59 -0.40 -3.22 16 27 C -0.08 -1.66 7.56 -39.58 -0.30 -1.96 16 28 C 0.01 0.13 4.94 -3.71 -0.02 0.11 16 29 C 0.07 0.72 7.01 37.21 0.26 0.99 16 30 O -0.39 -4.55 10.47 -35.23 -0.37 -4.92 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16 39 H 0.07 1.10 8.13 -51.93 -0.42 0.67 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.15 3.41 4.65 -51.93 -0.24 3.16 16 42 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 43 H 0.11 2.09 8.06 -52.48 -0.42 1.66 16 44 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 46 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 47 H 0.15 3.37 4.97 -52.48 -0.26 3.11 16 48 H 0.09 1.21 5.94 -51.93 -0.31 0.91 16 49 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -28.83 401.32 -11.06 -39.89 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.26 Total: 6.23 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -2.08 Total: -14.36 kcal Atomic # 7 Polarization: -28.83 SS G_CDS: -0.70 Total: -29.54 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.04 Total: -24.34 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.83 -11.06 -39.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800222956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.672 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds