Wall clock time and date at job start Wed Apr 1 2020 04:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.50807 * 2 1 4 4 C 1.53103 * 109.50533 * 120.08614 * 2 1 3 5 5 N 1.47011 * 109.25418 * 176.82754 * 4 2 1 6 6 C 1.46900 * 110.99793 * 177.60875 * 5 4 2 7 7 C 1.53001 * 109.47302 * 170.00163 * 6 5 4 8 8 O 1.45198 * 109.47188 * 64.99847 * 7 6 5 9 9 C 1.34232 * 117.00081 * 180.02562 * 8 7 6 10 10 O 1.20828 * 120.00024 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00043 * 179.97438 * 9 8 7 12 12 C 1.53004 * 109.47131 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46560 * 55.00310 * 12 11 9 14 14 C 1.50697 * 109.47380 * 295.00358 * 12 11 9 15 15 H 1.08000 * 119.99866 * 121.36442 * 14 12 11 16 16 C 1.37870 * 119.99934 * 301.36846 * 14 12 11 17 17 N 1.31513 * 120.00354 * 6.17183 * 16 14 12 18 18 Si 1.86804 * 120.00061 * 186.17455 * 16 14 12 19 19 H 1.48497 * 109.47343 * 89.99641 * 18 16 14 20 20 H 1.48504 * 109.47281 * 209.99689 * 18 16 14 21 21 H 1.48499 * 109.47275 * 329.99666 * 18 16 14 22 22 C 1.50697 * 109.47288 * 175.00201 * 12 11 9 23 23 C 1.38231 * 120.00251 * 211.37695 * 22 12 11 24 24 C 1.38232 * 120.00539 * 179.81196 * 23 22 12 25 25 C 1.38240 * 119.99207 * 0.38821 * 24 23 22 26 26 C 1.38237 * 120.00518 * 359.86433 * 25 24 23 27 27 C 1.38226 * 119.99639 * 359.94802 * 26 25 24 28 28 C 1.47011 * 110.75766 * 301.38193 * 5 4 2 29 29 C 1.53103 * 109.25534 * 58.62016 * 28 5 4 30 30 O 1.43016 * 109.25735 * 303.15218 * 29 28 5 31 31 H 1.08995 * 109.46681 * 299.91024 * 1 2 3 32 32 H 1.08998 * 109.46797 * 59.91128 * 1 2 3 33 33 H 1.08999 * 109.46802 * 179.91604 * 1 2 3 34 34 H 1.09002 * 109.50696 * 56.89415 * 4 2 1 35 35 H 1.09001 * 109.54379 * 296.77889 * 4 2 1 36 36 H 1.08998 * 109.47643 * 50.00298 * 6 5 4 37 37 H 1.09003 * 109.47223 * 289.99893 * 6 5 4 38 38 H 1.09001 * 109.47365 * 304.99864 * 7 6 5 39 39 H 1.09001 * 109.47086 * 184.99865 * 7 6 5 40 40 H 1.08993 * 109.47243 * 300.00403 * 11 9 8 41 41 H 1.08997 * 109.46754 * 60.00452 * 11 9 8 42 42 H 0.97002 * 120.00400 * 180.02562 * 17 16 14 43 43 H 1.08008 * 119.99925 * 359.97438 * 23 22 12 44 44 H 1.07996 * 120.00516 * 180.23049 * 24 23 22 45 45 H 1.08004 * 119.99588 * 179.83493 * 25 24 23 46 46 H 1.08002 * 120.00159 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.00039 * 180.02562 * 27 26 25 48 48 H 1.08998 * 109.51282 * 178.55288 * 28 5 4 49 49 H 1.08997 * 109.50584 * 298.69028 * 28 5 4 50 50 H 1.08999 * 109.50888 * 183.22172 * 29 28 5 51 51 H 1.08999 * 109.50555 * 63.08568 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7235 1.2487 5 7 3.5093 -0.7870 1.2053 6 6 4.0446 -1.4250 2.4154 7 6 5.5383 -1.6991 2.2293 8 8 6.2507 -0.4393 2.1120 9 6 7.5806 -0.5047 1.9421 10 8 8.1312 -1.5791 1.8926 11 6 8.3868 0.7618 1.8120 12 6 9.8645 0.4093 1.6297 13 1 9.9749 -0.2653 0.7807 14 6 10.3779 -0.2638 2.8764 15 1 10.7954 -1.2583 2.8202 16 6 10.3146 0.3898 4.0887 17 7 9.6980 1.5478 4.1800 18 14 11.1048 -0.3695 5.6015 19 1 12.5127 0.0907 5.7084 20 1 10.3546 0.0470 6.8136 21 1 11.0753 -1.8496 5.4854 22 6 10.6537 1.6680 1.3772 23 6 11.7821 1.6280 0.5797 24 6 12.5039 2.7833 0.3448 25 6 12.1018 3.9771 0.9141 26 6 10.9764 4.0162 1.7158 27 6 10.2525 2.8616 1.9475 28 6 3.9649 -1.4869 -0.0046 29 6 3.4345 -0.7557 -1.2408 30 8 2.0085 -0.6760 -1.1659 31 1 -0.3632 0.5124 0.8908 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.6338 -1.7341 1.2763 35 1 1.7267 -0.1797 2.1396 36 1 3.5221 -2.3651 2.5921 37 1 3.9004 -0.7630 3.2693 38 1 5.6898 -2.2877 1.3245 39 1 5.9163 -2.2515 3.0896 40 1 8.0384 1.3271 0.9478 41 1 8.2657 1.3636 2.7127 42 1 9.6538 2.0078 5.0329 43 1 12.0983 0.6945 0.1379 44 1 13.3834 2.7527 -0.2813 45 1 12.6672 4.8793 0.7328 46 1 10.6625 4.9488 2.1609 47 1 9.3729 2.8922 2.5736 48 1 5.0546 -1.4998 -0.0292 49 1 3.5882 -2.5096 0.0028 50 1 3.7217 -1.3030 -2.1386 51 1 3.8538 0.2497 -1.2768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800222956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:28 Heat of formation + Delta-G solvation = -110.244918 kcal Electronic energy + Delta-G solvation = -31168.321172 eV Core-core repulsion = 27032.401063 eV Total energy + Delta-G solvation = -4135.920109 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.38400 -40.63203 -39.83500 -37.87046 -36.59725 -36.01163 -33.79955 -33.04068 -31.55967 -31.34563 -30.19984 -29.33496 -27.92891 -26.05710 -24.86494 -24.41425 -23.13685 -22.42254 -21.96357 -21.26091 -20.92063 -18.60189 -18.26459 -17.93009 -17.49542 -17.32123 -16.98705 -16.70818 -16.51131 -16.19082 -15.92927 -15.76593 -15.45467 -15.34237 -15.09977 -14.70415 -14.27414 -14.00669 -13.81266 -13.60106 -13.46273 -13.38487 -13.30207 -13.15528 -13.07998 -12.84210 -12.80012 -12.76699 -12.66409 -12.26267 -12.14173 -12.06063 -11.91205 -11.76363 -11.46433 -11.41390 -11.22911 -11.10216 -10.91509 -10.61622 -10.46547 -9.41068 -9.38860 -9.13377 -7.99880 -6.16165 0.86720 0.97868 1.36869 1.40038 1.47682 1.60562 1.97830 2.43057 2.66496 2.83203 3.16067 3.35046 3.64477 3.85464 3.87319 4.04065 4.11626 4.15507 4.18632 4.21352 4.31196 4.34670 4.40839 4.46699 4.49485 4.56528 4.62036 4.64603 4.69869 4.74684 4.78113 4.79522 4.84129 4.85505 4.97338 5.04990 5.09691 5.13254 5.26947 5.28731 5.50420 5.55208 5.65274 5.70048 5.88190 5.89924 5.93184 5.93489 6.09650 6.20774 6.31635 6.39141 6.56176 6.80592 7.17413 7.48168 8.90201 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.002767 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.086136 B =10117.917874 C =11376.753931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.082 3.918 3 H 0.061 0.939 4 C 0.026 3.974 5 N -0.546 5.546 6 C 0.067 3.933 7 C 0.056 3.944 8 O -0.354 6.354 9 C 0.470 3.530 10 O -0.534 6.534 11 C -0.106 4.106 12 C 0.089 3.911 13 H 0.021 0.979 14 C -0.502 4.502 15 H 0.034 0.966 16 C 0.034 3.966 17 N -0.885 5.885 18 Si 0.934 3.066 19 H -0.280 1.280 20 H -0.277 1.277 21 H -0.285 1.285 22 C -0.056 4.056 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.147 4.147 26 C -0.148 4.148 27 C -0.091 4.091 28 C 0.014 3.986 29 C 0.067 3.933 30 O -0.398 6.398 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.134 0.866 42 H 0.265 0.735 43 H 0.108 0.892 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.126 0.874 47 H 0.136 0.864 48 H 0.076 0.924 49 H 0.046 0.954 50 H 0.113 0.887 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.850 0.715 -6.384 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.025 3.975 3 H 0.079 0.921 4 C -0.101 4.101 5 N -0.272 5.272 6 C -0.061 4.061 7 C -0.018 4.018 8 O -0.271 6.271 9 C 0.316 3.684 10 O -0.423 6.423 11 C -0.144 4.144 12 C 0.070 3.930 13 H 0.040 0.960 14 C -0.539 4.539 15 H 0.053 0.947 16 C -0.166 4.166 17 N -0.523 5.523 18 Si 0.761 3.239 19 H -0.206 1.206 20 H -0.203 1.203 21 H -0.210 1.210 22 C -0.057 4.057 23 C -0.166 4.166 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.166 4.166 27 C -0.109 4.109 28 C -0.115 4.115 29 C -0.010 4.010 30 O -0.317 6.317 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.151 0.849 42 H 0.075 0.925 43 H 0.126 0.874 44 H 0.152 0.848 45 H 0.155 0.845 46 H 0.144 0.856 47 H 0.154 0.846 48 H 0.094 0.906 49 H 0.064 0.936 50 H 0.131 0.869 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.711 0.898 -6.386 16.063 hybrid contribution 0.799 -1.676 1.351 2.296 sum -13.913 -0.778 -5.036 14.816 Atomic orbital electron populations 1.21739 0.90940 1.03194 1.03674 1.22329 0.96154 0.95277 0.83783 0.92121 1.22887 0.86448 1.00601 1.00204 1.62208 1.09785 1.53287 1.01881 1.22185 0.90537 0.99633 0.93695 1.23245 0.91997 0.84500 1.02038 1.86617 1.21190 1.36040 1.83267 1.24265 0.80494 0.92672 0.71017 1.90550 1.71860 1.32508 1.47425 1.21686 0.94737 0.92383 1.05545 1.17575 0.89540 0.90791 0.95123 0.96009 1.21011 1.40090 1.00244 0.92570 0.94743 1.25298 0.95701 0.95470 1.00151 1.69624 1.42010 1.15144 1.25543 0.85933 0.78968 0.78403 0.80585 1.20642 1.20263 1.21048 1.20239 0.96065 0.95249 0.94139 1.21097 0.96422 0.98380 1.00677 1.21177 1.00291 0.92689 1.01572 1.21234 0.97673 0.98261 0.99279 1.21388 0.96842 0.98425 0.99926 1.21567 1.01687 0.91487 0.96189 1.22854 1.00982 0.96396 0.91220 1.22676 0.80472 1.00438 0.97428 1.87948 1.21445 1.78633 1.43724 0.89033 0.91483 0.91874 0.93599 0.88192 0.90473 0.88819 0.91328 0.91625 0.90072 0.84914 0.92505 0.87433 0.84775 0.84538 0.85634 0.84634 0.90552 0.93601 0.86916 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.57 71.98 0.69 -1.13 16 2 C 0.08 1.54 3.42 30.63 0.10 1.65 16 3 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.03 0.48 4.91 86.32 0.42 0.91 16 5 N -0.55 -12.83 4.83 -895.21 -4.32 -17.15 16 6 C 0.07 1.53 5.67 86.30 0.49 2.02 16 7 C 0.06 1.71 4.95 71.98 0.36 2.07 16 8 O -0.35 -13.49 10.17 -51.44 -0.52 -14.02 16 9 C 0.47 21.04 7.71 71.24 0.55 21.59 16 10 O -0.53 -26.69 14.74 21.96 0.32 -26.37 16 11 C -0.11 -4.77 4.33 29.85 0.13 -4.64 16 12 C 0.09 4.35 1.98 -12.29 -0.02 4.33 16 13 H 0.02 1.09 7.89 -2.39 -0.02 1.07 16 14 C -0.50 -27.42 7.27 25.60 0.19 -27.23 16 15 H 0.03 2.01 7.82 -2.91 -0.02 1.99 16 16 C 0.03 1.78 5.14 84.65 0.44 2.21 16 17 N -0.88 -44.90 7.74 21.44 0.17 -44.74 16 18 Si 0.93 43.64 29.54 68.60 2.03 45.66 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 22 C -0.06 -2.58 4.68 -19.87 -0.09 -2.68 16 23 C -0.15 -6.13 9.70 22.27 0.22 -5.92 16 24 C -0.14 -4.92 10.05 22.27 0.22 -4.69 16 25 C -0.15 -4.95 10.05 22.27 0.22 -4.73 16 26 C -0.15 -5.51 10.05 22.27 0.22 -5.29 16 27 C -0.09 -3.95 7.56 22.27 0.17 -3.78 16 28 C 0.01 0.31 4.94 86.32 0.43 0.74 16 29 C 0.07 1.44 7.01 72.02 0.50 1.94 16 30 O -0.40 -9.01 10.47 -148.98 -1.56 -10.57 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.07 2.05 5.94 -2.39 -0.01 2.04 16 39 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 40 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.13 6.40 4.65 -2.39 -0.01 6.38 16 42 H 0.26 12.98 8.31 -92.71 -0.77 12.21 16 43 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 44 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 45 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 46 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 47 H 0.14 6.19 4.97 -2.91 -0.01 6.18 16 48 H 0.08 2.02 5.94 -2.39 -0.01 2.00 16 49 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.11 2.01 8.14 -2.39 -0.02 2.00 16 51 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -62.59 401.32 2.25 -60.34 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.91 Total: 29.46 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 5.23 Total: -22.62 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -4.16 Total: -61.89 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -1.76 Total: -50.95 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -62.59 2.25 -60.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800222956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.907 kcal (2) G-P(sol) polarization free energy of solvation -62.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds