Wall clock time and date at job start Wed Apr 1 2020 04:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.50761 * 2 1 4 4 C 1.53098 * 109.50584 * 239.92026 * 2 1 3 5 5 N 1.47016 * 109.25782 * 183.17411 * 4 2 1 6 6 C 1.46903 * 110.99790 * 182.39186 * 5 4 2 7 7 C 1.53008 * 109.47282 * 75.74754 * 6 5 4 8 8 O 1.45196 * 109.46840 * 64.31196 * 7 6 5 9 9 C 1.34237 * 116.99599 * 179.97438 * 8 7 6 10 10 O 1.20825 * 119.99764 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99859 * 180.02562 * 9 8 7 12 12 C 1.53003 * 109.47127 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47004 * 53.80230 * 12 11 9 14 14 C 1.50698 * 109.46848 * 293.80401 * 12 11 9 15 15 H 1.08000 * 120.00073 * 324.79679 * 14 12 11 16 16 C 1.37881 * 119.99680 * 144.80644 * 14 12 11 17 17 N 1.31517 * 119.99634 * 181.40911 * 16 14 12 18 18 Si 1.86795 * 120.00098 * 1.40318 * 16 14 12 19 19 H 1.48503 * 109.46977 * 267.09623 * 18 16 14 20 20 H 1.48500 * 109.47214 * 27.09334 * 18 16 14 21 21 H 1.48499 * 109.47179 * 147.09839 * 18 16 14 22 22 C 1.50698 * 109.47205 * 173.80187 * 12 11 9 23 23 C 1.38242 * 119.99730 * 66.63548 * 22 12 11 24 24 C 1.38235 * 119.99723 * 179.80902 * 23 22 12 25 25 C 1.38239 * 119.99856 * 0.39905 * 24 23 22 26 26 C 1.38233 * 120.00195 * 359.85920 * 25 24 23 27 27 C 1.38230 * 119.99872 * 359.95196 * 26 25 24 28 28 C 1.47004 * 110.75705 * 58.61527 * 5 4 2 29 29 C 1.53108 * 109.25692 * 301.38735 * 28 5 4 30 30 O 1.43011 * 109.25946 * 56.84469 * 29 28 5 31 31 H 1.08997 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46962 * 300.08052 * 1 2 3 33 33 H 1.09008 * 109.47001 * 60.08055 * 1 2 3 34 34 H 1.09004 * 109.51139 * 63.23801 * 4 2 1 35 35 H 1.09000 * 109.50871 * 303.10790 * 4 2 1 36 36 H 1.08999 * 109.47043 * 315.74543 * 6 5 4 37 37 H 1.09003 * 109.46949 * 195.74279 * 6 5 4 38 38 H 1.09000 * 109.46821 * 304.31173 * 7 6 5 39 39 H 1.08994 * 109.46864 * 184.31352 * 7 6 5 40 40 H 1.09005 * 109.47540 * 60.00083 * 11 9 8 41 41 H 1.09005 * 109.47496 * 300.00228 * 11 9 8 42 42 H 0.97002 * 119.99766 * 179.97438 * 17 16 14 43 43 H 1.07995 * 119.99915 * 0.02562 * 23 22 12 44 44 H 1.07997 * 120.00301 * 180.23453 * 24 23 22 45 45 H 1.08003 * 119.99679 * 179.83121 * 25 24 23 46 46 H 1.07995 * 119.99775 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.00173 * 180.02562 * 27 26 25 48 48 H 1.09000 * 109.50710 * 61.31410 * 28 5 4 49 49 H 1.08996 * 109.51287 * 181.45007 * 28 5 4 50 50 H 1.08998 * 109.50014 * 296.91224 * 29 28 5 51 51 H 1.08992 * 109.54501 * 176.80476 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2488 5 7 3.5094 -0.7870 -1.2054 6 6 4.0446 -1.4248 -2.4156 7 6 3.9729 -0.4407 -3.5851 8 8 4.8385 0.6936 -3.3168 9 6 4.8907 1.6550 -4.2522 10 8 4.2343 1.5521 -5.2614 11 6 5.7678 2.8625 -4.0436 12 6 5.6441 3.7971 -5.2487 13 1 4.5932 4.0277 -5.4232 14 6 6.2199 3.1237 -6.4677 15 1 7.0788 2.4760 -6.3718 16 6 5.6502 3.3346 -7.7055 17 7 6.1354 2.7252 -8.7651 18 14 4.1891 4.4857 -7.8773 19 1 2.9297 3.7057 -7.7746 20 1 4.2307 5.5031 -6.7963 21 1 4.2454 5.1634 -9.1974 22 6 6.3995 5.0721 -4.9752 23 6 7.7768 5.0482 -4.8593 24 6 8.4700 6.2184 -4.6124 25 6 7.7852 7.4111 -4.4731 26 6 6.4075 7.4342 -4.5837 27 6 5.7147 6.2646 -4.8345 28 6 3.9649 -1.4869 0.0044 29 6 3.4344 -0.7559 1.2407 30 8 2.0085 -0.6762 1.1658 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5151 0.8892 33 1 -0.3633 0.5126 -0.8908 34 1 1.7267 -0.1789 -2.1392 35 1 1.6338 -1.7339 -1.2765 36 1 3.4553 -2.3113 -2.6500 37 1 5.0822 -1.7125 -2.2461 38 1 2.9465 -0.0941 -3.7057 39 1 4.2982 -0.9380 -4.4988 40 1 6.8047 2.5441 -3.9352 41 1 5.4533 3.3888 -3.1423 42 1 5.7344 2.8733 -9.6358 43 1 8.3115 4.1159 -4.9651 44 1 9.5463 6.2004 -4.5256 45 1 8.3266 8.3250 -4.2775 46 1 5.8726 8.3659 -4.4746 47 1 4.6383 6.2826 -4.9214 48 1 3.5882 -2.5097 -0.0031 49 1 5.0546 -1.4999 0.0290 50 1 3.8537 0.2495 1.2768 51 1 3.7217 -1.3026 2.1388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800222957.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:33 Heat of formation + Delta-G solvation = -103.684759 kcal Electronic energy + Delta-G solvation = -30895.948386 eV Core-core repulsion = 26760.312746 eV Total energy + Delta-G solvation = -4135.635640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.06406 -39.58981 -38.56210 -36.61152 -35.44106 -34.11570 -33.05044 -31.74390 -30.71963 -30.21793 -29.12104 -28.04052 -26.33954 -25.67135 -23.18738 -22.76691 -21.96812 -21.69108 -20.76085 -20.39881 -19.16888 -17.08700 -17.02779 -16.78659 -16.60597 -16.10892 -15.79404 -15.55508 -15.35505 -15.13457 -14.72580 -14.44545 -14.23896 -14.10661 -13.81265 -13.31635 -12.92729 -12.83377 -12.75225 -12.62886 -12.58161 -12.46147 -12.26671 -12.09927 -11.95069 -11.78888 -11.77761 -11.40717 -11.09743 -11.06148 -10.79446 -10.68885 -10.55572 -10.40461 -10.07037 -9.94589 -9.82491 -9.66133 -9.51685 -9.13921 -8.58380 -8.49149 -8.21147 -7.84663 -6.03314 -4.02123 2.08705 2.12565 3.13497 3.27517 3.39792 3.44351 3.45206 3.46531 3.57967 4.49001 4.50903 4.55295 4.68776 4.69539 4.87773 4.92714 5.05051 5.07771 5.19322 5.21885 5.29787 5.32215 5.35083 5.42029 5.51188 5.54690 5.54845 5.55106 5.67479 5.67735 5.70168 5.80121 5.83127 5.89610 5.92499 5.97008 6.08702 6.23930 6.30474 6.52534 6.66399 6.71624 6.73270 6.80446 6.95686 6.96406 7.12907 7.14175 7.26927 7.53159 7.69067 7.78844 8.46850 8.67613 8.95181 9.60849 11.09415 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011298 B = 0.002790 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.795335 B =10032.499454 C =10942.058494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 H 0.069 0.931 4 C 0.020 3.980 5 N -0.530 5.530 6 C 0.057 3.943 7 C 0.074 3.926 8 O -0.356 6.356 9 C 0.457 3.543 10 O -0.478 6.478 11 C -0.088 4.088 12 C 0.053 3.947 13 H 0.051 0.949 14 C -0.496 4.496 15 H 0.073 0.927 16 C 0.087 3.913 17 N -0.897 5.897 18 Si 0.869 3.131 19 H -0.276 1.276 20 H -0.254 1.254 21 H -0.293 1.293 22 C -0.041 4.041 23 C -0.099 4.099 24 C -0.128 4.128 25 C -0.147 4.147 26 C -0.127 4.127 27 C -0.134 4.134 28 C 0.019 3.981 29 C 0.065 3.935 30 O -0.386 6.386 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.262 0.738 43 H 0.121 0.879 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.040 0.960 49 H 0.088 0.912 50 H 0.061 0.939 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 -4.772 18.386 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 H 0.087 0.913 4 C -0.108 4.108 5 N -0.255 5.255 6 C -0.071 4.071 7 C -0.001 4.001 8 O -0.274 6.274 9 C 0.299 3.701 10 O -0.362 6.362 11 C -0.126 4.126 12 C 0.034 3.966 13 H 0.069 0.931 14 C -0.533 4.533 15 H 0.091 0.909 16 C -0.116 4.116 17 N -0.534 5.534 18 Si 0.696 3.304 19 H -0.202 1.202 20 H -0.178 1.178 21 H -0.220 1.220 22 C -0.041 4.041 23 C -0.117 4.117 24 C -0.146 4.146 25 C -0.166 4.166 26 C -0.146 4.146 27 C -0.152 4.152 28 C -0.109 4.109 29 C -0.012 4.012 30 O -0.305 6.305 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.130 0.870 48 H 0.058 0.942 49 H 0.107 0.893 50 H 0.080 0.920 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.276 -4.465 18.008 19.289 hybrid contribution -0.884 -0.243 -0.878 1.270 sum -6.161 -4.708 17.130 18.803 Atomic orbital electron populations 1.21755 0.92813 1.02849 1.02827 1.22152 0.94750 0.95873 0.84088 0.91265 1.22910 0.87961 1.00146 0.99755 1.62140 1.08574 1.52900 1.01864 1.22216 1.01268 0.94269 0.89306 1.22829 0.94266 0.86056 0.96991 1.86566 1.62556 1.30485 1.47775 1.23873 0.81652 0.83863 0.80737 1.90696 1.41059 1.77223 1.27206 1.21429 0.98945 0.91436 1.00756 1.18195 0.96497 0.88476 0.93429 0.93127 1.20633 1.15416 1.27702 0.89505 0.90932 1.24887 0.96172 0.94827 0.95698 1.69887 1.41568 1.42708 0.99277 0.86976 0.83997 0.81853 0.77554 1.20233 1.17822 1.21972 1.20649 0.94372 0.96260 0.92833 1.20994 0.94133 0.97898 0.98686 1.21062 0.99079 0.93115 1.01333 1.20877 0.94354 0.97474 1.03856 1.20959 0.94423 0.97557 1.01621 1.21138 0.99518 0.92832 1.01682 1.22799 1.01347 0.95998 0.90764 1.22639 0.80944 1.00632 0.97010 1.87961 1.21123 1.78446 1.42940 0.91974 0.91521 0.90782 0.89498 0.93993 0.92567 0.89425 0.91873 0.90899 0.88733 0.90201 0.92785 0.86084 0.87118 0.87395 0.87352 0.87021 0.94186 0.89321 0.92025 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.57 37.16 0.36 -0.83 16 2 C 0.09 0.91 3.42 -26.68 -0.09 0.81 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.02 0.21 4.75 -3.71 -0.02 0.20 16 5 N -0.53 -5.92 4.60 -234.30 -1.08 -6.99 16 6 C 0.06 0.62 5.40 -3.82 -0.02 0.60 16 7 C 0.07 1.05 5.65 37.16 0.21 1.26 16 8 O -0.36 -6.10 10.16 -39.28 -0.40 -6.50 16 9 C 0.46 9.25 7.71 36.00 0.28 9.52 16 10 O -0.48 -11.49 14.77 -18.75 -0.28 -11.77 16 11 C -0.09 -1.67 5.08 -27.88 -0.14 -1.81 16 12 C 0.05 1.20 1.17 -92.92 -0.11 1.09 16 13 H 0.05 1.20 4.94 -51.93 -0.26 0.95 16 14 C -0.50 -13.38 6.88 -34.44 -0.24 -13.61 16 15 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 16 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 17 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 18 Si 0.87 22.17 27.00 -169.99 -4.59 17.58 16 19 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.25 -5.96 4.72 56.52 0.27 -5.70 16 21 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 22 C -0.04 -0.84 4.65 -104.62 -0.49 -1.32 16 23 C -0.10 -1.91 8.93 -39.58 -0.35 -2.26 16 24 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 16 25 C -0.15 -2.37 10.05 -39.58 -0.40 -2.77 16 26 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 27 C -0.13 -2.57 8.69 -39.59 -0.34 -2.92 16 28 C 0.02 0.18 5.60 -3.71 -0.02 0.15 16 29 C 0.06 0.58 7.01 37.21 0.26 0.85 16 30 O -0.39 -4.23 10.47 -35.23 -0.37 -4.60 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.09 0.93 6.75 -51.93 -0.35 0.58 16 35 H 0.04 0.42 8.13 -51.93 -0.42 0.00 16 36 H 0.06 0.52 7.99 -51.93 -0.41 0.11 16 37 H 0.09 0.90 7.86 -51.93 -0.41 0.50 16 38 H 0.06 0.91 6.76 -51.93 -0.35 0.56 16 39 H 0.07 1.08 8.13 -51.93 -0.42 0.65 16 40 H 0.09 1.70 8.05 -51.93 -0.42 1.28 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.12 2.32 7.87 -52.49 -0.41 1.90 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 46 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 47 H 0.11 2.09 7.12 -52.49 -0.37 1.72 16 48 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.09 0.73 8.02 -51.93 -0.42 0.32 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -33.27 407.33 -10.40 -43.67 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.59 Total: 3.08 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -2.01 Total: -13.74 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: -0.30 Total: -33.87 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.05 Total: -22.86 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.59 Total: 17.58 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.27 -10.40 -43.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800222957.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.012 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds