Wall clock time and date at job start Wed Apr 1 2020 04:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.50761 * 2 1 4 4 C 1.53098 * 109.50584 * 239.92026 * 2 1 3 5 5 N 1.47016 * 109.25782 * 183.17411 * 4 2 1 6 6 C 1.46903 * 110.99790 * 182.39186 * 5 4 2 7 7 C 1.53008 * 109.47282 * 75.74754 * 6 5 4 8 8 O 1.45196 * 109.46840 * 64.31196 * 7 6 5 9 9 C 1.34237 * 116.99599 * 179.97438 * 8 7 6 10 10 O 1.20825 * 119.99764 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99859 * 180.02562 * 9 8 7 12 12 C 1.53003 * 109.47127 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47004 * 53.80230 * 12 11 9 14 14 C 1.50698 * 109.46848 * 293.80401 * 12 11 9 15 15 H 1.08000 * 120.00073 * 324.79679 * 14 12 11 16 16 C 1.37881 * 119.99680 * 144.80644 * 14 12 11 17 17 N 1.31517 * 119.99634 * 181.40911 * 16 14 12 18 18 Si 1.86795 * 120.00098 * 1.40318 * 16 14 12 19 19 H 1.48503 * 109.46977 * 267.09623 * 18 16 14 20 20 H 1.48500 * 109.47214 * 27.09334 * 18 16 14 21 21 H 1.48499 * 109.47179 * 147.09839 * 18 16 14 22 22 C 1.50698 * 109.47205 * 173.80187 * 12 11 9 23 23 C 1.38242 * 119.99730 * 66.63548 * 22 12 11 24 24 C 1.38235 * 119.99723 * 179.80902 * 23 22 12 25 25 C 1.38239 * 119.99856 * 0.39905 * 24 23 22 26 26 C 1.38233 * 120.00195 * 359.85920 * 25 24 23 27 27 C 1.38230 * 119.99872 * 359.95196 * 26 25 24 28 28 C 1.47004 * 110.75705 * 58.61527 * 5 4 2 29 29 C 1.53108 * 109.25692 * 301.38735 * 28 5 4 30 30 O 1.43011 * 109.25946 * 56.84469 * 29 28 5 31 31 H 1.08997 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46962 * 300.08052 * 1 2 3 33 33 H 1.09008 * 109.47001 * 60.08055 * 1 2 3 34 34 H 1.09004 * 109.51139 * 63.23801 * 4 2 1 35 35 H 1.09000 * 109.50871 * 303.10790 * 4 2 1 36 36 H 1.08999 * 109.47043 * 315.74543 * 6 5 4 37 37 H 1.09003 * 109.46949 * 195.74279 * 6 5 4 38 38 H 1.09000 * 109.46821 * 304.31173 * 7 6 5 39 39 H 1.08994 * 109.46864 * 184.31352 * 7 6 5 40 40 H 1.09005 * 109.47540 * 60.00083 * 11 9 8 41 41 H 1.09005 * 109.47496 * 300.00228 * 11 9 8 42 42 H 0.97002 * 119.99766 * 179.97438 * 17 16 14 43 43 H 1.07995 * 119.99915 * 0.02562 * 23 22 12 44 44 H 1.07997 * 120.00301 * 180.23453 * 24 23 22 45 45 H 1.08003 * 119.99679 * 179.83121 * 25 24 23 46 46 H 1.07995 * 119.99775 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.00173 * 180.02562 * 27 26 25 48 48 H 1.09000 * 109.50710 * 61.31410 * 28 5 4 49 49 H 1.08996 * 109.51287 * 181.45007 * 28 5 4 50 50 H 1.08998 * 109.50014 * 296.91224 * 29 28 5 51 51 H 1.08992 * 109.54501 * 176.80476 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2488 5 7 3.5094 -0.7870 -1.2054 6 6 4.0446 -1.4248 -2.4156 7 6 3.9729 -0.4407 -3.5851 8 8 4.8385 0.6936 -3.3168 9 6 4.8907 1.6550 -4.2522 10 8 4.2343 1.5521 -5.2614 11 6 5.7678 2.8625 -4.0436 12 6 5.6441 3.7971 -5.2487 13 1 4.5932 4.0277 -5.4232 14 6 6.2199 3.1237 -6.4677 15 1 7.0788 2.4760 -6.3718 16 6 5.6502 3.3346 -7.7055 17 7 6.1354 2.7252 -8.7651 18 14 4.1891 4.4857 -7.8773 19 1 2.9297 3.7057 -7.7746 20 1 4.2307 5.5031 -6.7963 21 1 4.2454 5.1634 -9.1974 22 6 6.3995 5.0721 -4.9752 23 6 7.7768 5.0482 -4.8593 24 6 8.4700 6.2184 -4.6124 25 6 7.7852 7.4111 -4.4731 26 6 6.4075 7.4342 -4.5837 27 6 5.7147 6.2646 -4.8345 28 6 3.9649 -1.4869 0.0044 29 6 3.4344 -0.7559 1.2407 30 8 2.0085 -0.6762 1.1658 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5151 0.8892 33 1 -0.3633 0.5126 -0.8908 34 1 1.7267 -0.1789 -2.1392 35 1 1.6338 -1.7339 -1.2765 36 1 3.4553 -2.3113 -2.6500 37 1 5.0822 -1.7125 -2.2461 38 1 2.9465 -0.0941 -3.7057 39 1 4.2982 -0.9380 -4.4988 40 1 6.8047 2.5441 -3.9352 41 1 5.4533 3.3888 -3.1423 42 1 5.7344 2.8733 -9.6358 43 1 8.3115 4.1159 -4.9651 44 1 9.5463 6.2004 -4.5256 45 1 8.3266 8.3250 -4.2775 46 1 5.8726 8.3659 -4.4746 47 1 4.6383 6.2826 -4.9214 48 1 3.5882 -2.5097 -0.0031 49 1 5.0546 -1.4999 0.0290 50 1 3.8537 0.2495 1.2768 51 1 3.7217 -1.3026 2.1388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800222957.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:32 Heat of formation + Delta-G solvation = -123.951802 kcal Electronic energy + Delta-G solvation = -30896.827230 eV Core-core repulsion = 26760.312746 eV Total energy + Delta-G solvation = -4136.514485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.38833 -40.64128 -39.98512 -37.84501 -36.61504 -35.86281 -33.78273 -33.77076 -31.77773 -31.58450 -30.50565 -28.89266 -28.02000 -26.72041 -24.62534 -23.81058 -23.32165 -22.76841 -22.02026 -21.34656 -20.82087 -19.05884 -18.58215 -17.79647 -17.56121 -17.36917 -17.09427 -16.89276 -16.36391 -16.23359 -15.93116 -15.79603 -15.42830 -15.39319 -15.17495 -14.82038 -14.40621 -14.10150 -14.03277 -13.94698 -13.66182 -13.62122 -13.35764 -13.29631 -13.17927 -12.91473 -12.89704 -12.74971 -12.67651 -12.13373 -12.10723 -12.00393 -11.91639 -11.81308 -11.52616 -11.49114 -11.44094 -11.23655 -11.02486 -10.65313 -10.61307 -9.59982 -9.40848 -9.30977 -8.24256 -6.23136 0.69395 0.73196 1.32922 1.36204 1.42730 1.51233 1.89829 2.39996 2.64540 2.83509 3.07986 3.22617 3.66954 3.83665 3.93806 4.00476 4.07261 4.11382 4.12380 4.19186 4.26875 4.29017 4.32379 4.36216 4.41225 4.44387 4.48837 4.54077 4.60622 4.63359 4.68036 4.69533 4.76688 4.83519 4.86120 4.86485 4.95942 5.01717 5.06752 5.16249 5.23040 5.36427 5.40540 5.60785 5.64575 5.78293 5.83258 5.90436 5.93271 6.02297 6.21173 6.31811 6.36605 6.77080 7.09071 7.42020 8.92380 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011298 B = 0.002790 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.795335 B =10032.499454 C =10942.058494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.057 0.943 4 C 0.022 3.978 5 N -0.548 5.548 6 C 0.066 3.934 7 C 0.068 3.932 8 O -0.348 6.348 9 C 0.460 3.540 10 O -0.525 6.525 11 C -0.085 4.085 12 C 0.056 3.944 13 H 0.037 0.963 14 C -0.475 4.475 15 H 0.037 0.963 16 C 0.026 3.974 17 N -0.951 5.951 18 Si 0.917 3.083 19 H -0.288 1.288 20 H -0.222 1.222 21 H -0.296 1.296 22 C -0.064 4.064 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.138 4.138 26 C -0.125 4.125 27 C -0.149 4.149 28 C 0.021 3.979 29 C 0.062 3.938 30 O -0.399 6.399 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.259 0.741 43 H 0.109 0.891 44 H 0.138 0.862 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.113 0.887 48 H 0.046 0.954 49 H 0.099 0.901 50 H 0.055 0.945 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 -3.006 21.092 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.075 0.925 4 C -0.106 4.106 5 N -0.273 5.273 6 C -0.061 4.061 7 C -0.007 4.007 8 O -0.265 6.265 9 C 0.303 3.697 10 O -0.413 6.413 11 C -0.123 4.123 12 C 0.037 3.963 13 H 0.055 0.945 14 C -0.513 4.513 15 H 0.055 0.945 16 C -0.170 4.170 17 N -0.592 5.592 18 Si 0.743 3.257 19 H -0.214 1.214 20 H -0.144 1.144 21 H -0.223 1.223 22 C -0.065 4.065 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.156 4.156 26 C -0.143 4.143 27 C -0.167 4.167 28 C -0.107 4.107 29 C -0.015 4.015 30 O -0.318 6.318 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.068 0.932 43 H 0.127 0.873 44 H 0.156 0.844 45 H 0.164 0.836 46 H 0.159 0.841 47 H 0.131 0.869 48 H 0.064 0.936 49 H 0.117 0.883 50 H 0.073 0.927 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.126 -2.689 20.780 21.571 hybrid contribution -0.829 -0.818 -1.562 1.948 sum -5.955 -3.508 19.218 20.423 Atomic orbital electron populations 1.21749 0.91489 1.03236 1.03403 1.22192 0.95850 0.95099 0.83865 0.92464 1.22887 0.87762 1.00362 0.99566 1.62100 1.08998 1.53749 1.02502 1.22153 1.02305 0.93555 0.88112 1.23110 0.93447 0.85537 0.98569 1.86550 1.62827 1.30681 1.46482 1.24112 0.80803 0.84463 0.80278 1.90682 1.43134 1.78323 1.29114 1.21385 0.99392 0.90848 1.00630 1.18059 0.95520 0.90003 0.92713 0.94461 1.20839 1.13317 1.26033 0.91086 0.94489 1.25617 0.98910 0.96769 0.95727 1.70028 1.43812 1.45603 0.99778 0.86202 0.80443 0.80878 0.78195 1.21427 1.14441 1.22261 1.20387 0.94874 0.95591 0.95648 1.21034 0.93828 0.98786 0.99955 1.21396 1.00589 0.92492 0.99949 1.21350 0.94289 0.98456 1.01522 1.21338 0.95059 0.97839 1.00029 1.21263 0.99820 0.93191 1.02448 1.22841 1.01975 0.96047 0.89801 1.22796 0.80070 1.00689 0.97948 1.87948 1.22207 1.78463 1.43186 0.91647 0.91167 0.90008 0.90311 0.93409 0.90447 0.88530 0.92233 0.91789 0.87832 0.86900 0.93194 0.87260 0.84372 0.83591 0.84130 0.86945 0.93559 0.88278 0.92661 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.57 71.98 0.69 -1.47 16 2 C 0.09 1.71 3.42 30.63 0.10 1.81 16 3 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 4 C 0.02 0.45 4.75 86.31 0.41 0.86 16 5 N -0.55 -11.52 4.60 -895.18 -4.12 -15.64 16 6 C 0.07 1.37 5.40 86.31 0.47 1.83 16 7 C 0.07 1.95 5.65 71.98 0.41 2.36 16 8 O -0.35 -11.93 10.16 -51.48 -0.52 -12.45 16 9 C 0.46 18.88 7.71 71.24 0.55 19.43 16 10 O -0.52 -26.12 14.77 21.97 0.32 -25.80 16 11 C -0.08 -3.23 5.08 29.85 0.15 -3.07 16 12 C 0.06 2.54 1.17 -12.29 -0.01 2.52 16 13 H 0.04 1.78 4.94 -2.39 -0.01 1.76 16 14 C -0.48 -26.58 6.88 25.60 0.18 -26.40 16 15 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 16 C 0.03 1.59 5.47 84.65 0.46 2.05 16 17 N -0.95 -61.47 13.96 21.45 0.30 -61.17 16 18 Si 0.92 46.76 27.00 68.60 1.85 48.62 16 19 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 20 H -0.22 -10.01 4.72 99.48 0.47 -9.54 16 21 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 22 C -0.06 -2.60 4.65 -19.87 -0.09 -2.69 16 23 C -0.12 -4.42 8.93 22.27 0.20 -4.22 16 24 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 25 C -0.14 -3.80 10.05 22.27 0.22 -3.57 16 26 C -0.12 -3.69 10.05 22.27 0.22 -3.46 16 27 C -0.15 -5.38 8.69 22.27 0.19 -5.18 16 28 C 0.02 0.35 5.60 86.32 0.48 0.83 16 29 C 0.06 1.01 7.01 72.02 0.50 1.51 16 30 O -0.40 -8.20 10.47 -148.98 -1.56 -9.76 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.08 1.67 6.75 -2.38 -0.02 1.65 16 35 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 36 H 0.08 1.30 7.99 -2.39 -0.02 1.28 16 37 H 0.10 1.83 7.86 -2.39 -0.02 1.81 16 38 H 0.06 1.75 6.76 -2.39 -0.02 1.74 16 39 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 40 H 0.10 3.74 8.05 -2.38 -0.02 3.72 16 41 H 0.11 3.54 8.14 -2.38 -0.02 3.52 16 42 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 43 H 0.11 4.23 7.87 -2.91 -0.02 4.21 16 44 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 45 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 46 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 47 H 0.11 3.95 7.12 -2.91 -0.02 3.93 16 48 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.10 1.42 8.02 -2.39 -0.02 1.40 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.25 407.33 2.29 -72.95 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.66 Total: 23.77 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 5.36 Total: -20.51 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -3.82 Total: -76.81 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.76 Total: -48.01 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.85 Total: 48.62 kcal Total: -75.25 2.29 -72.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800222957.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.001 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds