Wall clock time and date at job start Wed Apr 1 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 114.00089 * 2 1 4 4 C 1.53000 * 109.47090 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47160 * 64.99393 * 4 3 2 6 6 C 1.42898 * 114.00159 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.49560 * 329.94041 * 6 5 4 8 8 C 1.53037 * 109.52618 * 209.86050 * 6 5 4 9 9 C 1.53035 * 109.54148 * 178.66772 * 8 6 5 10 10 C 1.52767 * 109.38335 * 61.23346 * 9 8 6 11 11 N 1.46919 * 109.00920 * 305.59215 * 10 9 8 12 12 C 1.34780 * 120.63124 * 233.57778 * 11 10 9 13 13 O 1.21279 * 119.99962 * 179.71778 * 12 11 10 14 14 C 1.50696 * 119.99810 * 359.72211 * 12 11 10 15 15 C 1.50700 * 109.47105 * 179.97438 * 14 12 11 16 16 C 1.37634 * 120.12947 * 265.00368 * 15 14 12 17 17 C 1.38617 * 120.24891 * 179.97438 * 16 15 14 18 18 C 1.38659 * 120.50129 * 359.97438 * 17 16 15 19 19 C 1.37600 * 120.24526 * 0.02562 * 18 17 16 20 20 C 1.40699 * 120.12658 * 85.25608 * 15 14 12 21 21 C 1.41401 * 120.24067 * 0.02562 * 20 15 14 22 22 H 1.07990 * 120.00395 * 330.00553 * 21 20 15 23 23 C 1.39950 * 119.99504 * 150.01031 * 21 20 15 24 24 N 1.30821 * 119.99760 * 162.08641 * 23 21 20 25 25 Si 1.86805 * 120.00101 * 342.07895 * 23 21 20 26 26 H 1.48498 * 109.46722 * 95.39543 * 25 23 21 27 27 H 1.48501 * 109.47136 * 215.39649 * 25 23 21 28 28 H 1.48503 * 109.47111 * 335.39326 * 25 23 21 29 29 C 1.46934 * 118.73974 * 53.30961 * 11 10 9 30 30 H 1.08995 * 109.46897 * 300.00495 * 1 2 3 31 31 H 1.09000 * 109.46320 * 60.00707 * 1 2 3 32 32 H 1.08997 * 109.47410 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47193 * 59.99381 * 3 2 1 34 34 H 1.09002 * 109.46650 * 299.99615 * 3 2 1 35 35 H 1.08998 * 109.46957 * 304.99746 * 4 3 2 36 36 H 1.08997 * 109.47202 * 184.99459 * 4 3 2 37 37 H 1.09000 * 109.45492 * 298.68693 * 8 6 5 38 38 H 1.08996 * 109.46330 * 58.64106 * 8 6 5 39 39 H 1.08995 * 109.50298 * 181.31541 * 9 8 6 40 40 H 1.09004 * 109.49749 * 301.38510 * 9 8 6 41 41 H 1.08996 * 109.51161 * 185.70439 * 10 9 8 42 42 H 1.09005 * 109.42728 * 65.42635 * 10 9 8 43 43 H 1.09005 * 109.46891 * 59.99815 * 14 12 11 44 44 H 1.08996 * 109.47321 * 300.00207 * 14 12 11 45 45 H 1.08004 * 119.87814 * 0.02562 * 16 15 14 46 46 H 1.07995 * 119.75186 * 180.02562 * 17 16 15 47 47 H 1.07995 * 119.87739 * 180.02562 * 18 17 16 48 48 H 1.08000 * 120.12345 * 179.97438 * 19 18 17 49 49 H 0.97003 * 119.99982 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.58856 * 66.42618 * 29 11 10 51 51 H 1.08997 * 109.58608 * 186.70970 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5790 -1.2201 6 6 5.3823 0.4195 -1.3220 7 1 5.8789 1.2121 -0.7623 8 6 5.8008 0.4930 -2.7922 9 6 7.3212 0.3554 -2.8991 10 6 7.7480 -1.0014 -2.3417 11 7 7.2232 -1.1446 -0.9769 12 6 8.0453 -1.4505 0.0464 13 8 7.6007 -1.5609 1.1693 14 6 9.5170 -1.6552 -0.2048 15 6 10.2073 -1.9838 1.0938 16 6 10.8074 -0.9867 1.8288 17 6 11.4426 -1.2861 3.0239 18 6 11.4810 -2.5903 3.4932 19 6 10.8877 -3.6030 2.7749 20 6 10.2455 -3.3118 1.5571 21 6 9.6375 -4.3452 0.8075 22 1 8.7759 -4.1313 0.1927 23 6 10.1524 -5.6454 0.8626 24 7 9.4192 -6.6563 0.4730 25 14 11.8867 -5.9373 1.4924 26 1 11.8374 -6.2848 2.9353 27 1 12.5069 -7.0541 0.7351 28 1 12.6946 -4.7050 1.3072 29 6 5.7860 -0.9421 -0.7477 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8465 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1765 0.0901 37 1 5.3232 -0.3149 -3.3465 38 1 5.4927 1.4514 -3.2100 39 1 7.6209 0.4312 -3.9443 40 1 7.7996 1.1489 -2.3249 41 1 8.8361 -1.0614 -2.3230 42 1 7.3470 -1.7949 -2.9725 43 1 9.9445 -0.7438 -0.6227 44 1 9.6548 -2.4767 -0.9079 45 1 10.7826 0.0329 1.4734 46 1 11.9105 -0.4974 3.5944 47 1 11.9783 -2.8120 4.4258 48 1 10.9191 -4.6182 3.1421 49 1 9.7762 -7.5575 0.5108 50 1 5.2219 -1.7306 -1.2458 51 1 5.5798 -0.9654 0.3223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801106143.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:21 Heat of formation + Delta-G solvation = -132.939071 kcal Electronic energy + Delta-G solvation = -31055.033824 eV Core-core repulsion = 26918.129622 eV Total energy + Delta-G solvation = -4136.904202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.37286 -39.95610 -39.27197 -38.55909 -37.30215 -35.48523 -33.88522 -33.32554 -32.18134 -31.93150 -30.47082 -28.65764 -27.18048 -26.88807 -25.97495 -24.16279 -23.37361 -23.19657 -22.32113 -21.35408 -19.87064 -19.24232 -18.35128 -17.83636 -17.70042 -17.55410 -16.98976 -16.65557 -16.44760 -16.23204 -16.14307 -15.87129 -15.48596 -15.36559 -15.17151 -14.96263 -14.57908 -14.45541 -14.03529 -13.98442 -13.82507 -13.73551 -13.56353 -13.18709 -13.12112 -12.76578 -12.70268 -12.67596 -12.50829 -12.40604 -12.04261 -11.99343 -11.97756 -11.84619 -11.55225 -11.53507 -11.35459 -10.97480 -10.88913 -10.70265 -10.63506 -9.58827 -9.39688 -9.28293 -8.86080 -6.44916 0.79584 0.90810 1.26858 1.39542 1.49256 1.74861 1.97257 2.14127 2.62920 2.67496 2.84297 3.47589 3.68873 3.76245 3.94861 4.01403 4.04817 4.09123 4.13898 4.16786 4.27030 4.28669 4.37581 4.44586 4.46043 4.51057 4.52253 4.54678 4.56544 4.66968 4.69928 4.71369 4.76198 4.81107 4.83936 4.93225 4.94522 4.97965 5.08580 5.14270 5.16937 5.33354 5.37855 5.53392 5.67889 5.86989 5.95645 6.05490 6.13015 6.26400 6.29760 6.42566 6.47948 6.80805 6.91073 7.30593 8.22108 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.002642 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.378582 B =10595.764156 C =10810.924398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.063 3.937 4 C 0.053 3.947 5 O -0.384 6.384 6 C 0.088 3.912 7 H 0.067 0.933 8 C -0.110 4.110 9 C -0.121 4.121 10 C 0.093 3.907 11 N -0.613 5.613 12 C 0.516 3.484 13 O -0.580 6.580 14 C -0.068 4.068 15 C -0.173 4.173 16 C -0.078 4.078 17 C -0.229 4.229 18 C -0.092 4.092 19 C -0.257 4.257 20 C 0.082 3.918 21 C -0.469 4.469 22 H 0.053 0.947 23 C 0.046 3.954 24 N -0.854 5.854 25 Si 0.965 3.035 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.248 1.248 29 C 0.093 3.907 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.123 0.877 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.121 0.879 48 H 0.090 0.910 49 H 0.291 0.709 50 H 0.060 0.940 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.085 18.403 -8.577 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.013 4.013 4 C -0.023 4.023 5 O -0.302 6.302 6 C 0.029 3.971 7 H 0.085 0.915 8 C -0.147 4.147 9 C -0.159 4.159 10 C -0.028 4.028 11 N -0.349 5.349 12 C 0.306 3.694 13 O -0.459 6.459 14 C -0.107 4.107 15 C -0.174 4.174 16 C -0.096 4.096 17 C -0.248 4.248 18 C -0.110 4.110 19 C -0.276 4.276 20 C 0.079 3.921 21 C -0.499 4.499 22 H 0.071 0.929 23 C -0.167 4.167 24 N -0.480 5.480 25 Si 0.789 3.211 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.172 1.172 29 C -0.030 4.030 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.141 0.859 44 H 0.113 0.887 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.139 0.861 48 H 0.108 0.892 49 H 0.101 0.899 50 H 0.078 0.922 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.447 17.853 -8.226 21.395 hybrid contribution -0.041 -0.899 0.829 1.224 sum -8.488 16.953 -7.397 20.351 Atomic orbital electron populations 1.22903 0.79507 1.03522 1.01050 1.87956 1.21547 1.28882 1.95629 1.22694 0.91269 0.84978 1.02347 1.22803 0.94580 0.98107 0.86832 1.87939 1.21737 1.82222 1.38313 1.22390 0.81324 0.94550 0.98840 0.91537 1.21589 0.96366 1.04036 0.92755 1.21831 0.94416 0.95979 1.03638 1.22047 1.01054 0.99083 0.80644 1.48166 1.07219 1.70345 1.09147 1.21312 0.89782 0.74503 0.83821 1.90644 1.78211 1.51942 1.25053 1.20340 0.89296 1.03878 0.97175 1.19572 1.06007 0.93555 0.98304 1.20893 0.96324 0.97786 0.94595 1.20884 1.08558 0.96072 0.99294 1.20982 0.97840 0.93501 0.98653 1.21141 1.10180 0.98309 0.97969 1.17739 0.89947 0.93223 0.91143 1.19301 1.12743 0.92325 1.25534 0.92930 1.26816 1.02744 0.94867 0.92299 1.69753 1.38524 1.00992 1.38777 0.85493 0.78634 0.78744 0.78219 1.19499 1.20351 1.17176 1.21897 0.81358 0.98697 1.01075 0.92710 0.92851 0.89462 0.89607 0.91239 0.94358 0.89215 0.91215 0.89078 0.86673 0.90695 0.87831 0.90924 0.85882 0.88732 0.85430 0.85272 0.86058 0.89240 0.89888 0.92188 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.29 10.67 -144.34 -1.54 -11.83 16 3 C 0.06 1.16 6.32 71.98 0.45 1.61 16 4 C 0.05 1.15 6.13 71.98 0.44 1.59 16 5 O -0.38 -9.77 9.96 -144.34 -1.44 -11.20 16 6 C 0.09 2.12 2.76 30.67 0.08 2.20 16 7 H 0.07 1.54 7.79 -2.39 -0.02 1.52 16 8 C -0.11 -1.95 5.54 30.62 0.17 -1.78 16 9 C -0.12 -1.82 6.06 30.53 0.19 -1.64 16 10 C 0.09 2.07 6.31 86.22 0.54 2.61 16 11 N -0.61 -19.95 2.98 -819.73 -2.44 -22.39 16 12 C 0.52 21.41 7.33 87.66 0.64 22.05 16 13 O -0.58 -30.21 15.45 -3.03 -0.05 -30.25 16 14 C -0.07 -2.59 3.54 29.10 0.10 -2.48 16 15 C -0.17 -7.98 4.43 -19.41 -0.09 -8.06 16 16 C -0.08 -3.18 9.66 22.22 0.21 -2.96 16 17 C -0.23 -9.18 10.05 22.46 0.23 -8.96 16 18 C -0.09 -4.01 10.02 22.22 0.22 -3.79 16 19 C -0.26 -13.07 7.17 22.73 0.16 -12.90 16 20 C 0.08 4.37 5.09 -21.29 -0.11 4.26 16 21 C -0.47 -27.13 8.56 23.46 0.20 -26.92 16 22 H 0.05 3.30 7.00 -2.92 -0.02 3.28 16 23 C 0.05 2.58 5.41 85.26 0.46 3.04 16 24 N -0.85 -48.74 13.93 21.83 0.30 -48.43 16 25 Si 0.97 44.64 24.52 68.60 1.68 46.32 16 26 H -0.27 -12.16 6.72 99.48 0.67 -11.49 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 28 H -0.25 -11.50 6.86 99.48 0.68 -10.82 16 29 C 0.09 3.03 6.05 86.36 0.52 3.56 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 0.99 8.03 -2.39 -0.02 0.97 16 36 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.10 2.06 5.93 -2.39 -0.01 2.04 16 42 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.12 3.48 7.59 -2.38 -0.02 3.46 16 44 H 0.09 3.74 6.93 -2.39 -0.02 3.72 16 45 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 46 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 47 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 48 H 0.09 4.61 4.77 -2.91 -0.01 4.59 16 49 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 50 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.06 2.22 6.89 -2.39 -0.02 2.20 16 Total: -1.00 -77.92 404.69 3.06 -74.86 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.85 Total: 29.83 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 5.69 Total: -26.91 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -2.14 Total: -70.82 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -3.02 Total: -53.28 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.68 Total: 46.32 kcal Total: -77.92 3.06 -74.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801106143.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.078 kcal (2) G-P(sol) polarization free energy of solvation -77.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds