Wall clock time and date at job start Wed Apr 1 2020 04:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00739 * 2 1 4 4 C 1.38756 * 120.04966 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94021 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05798 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10999 * 359.95513 * 6 5 4 8 8 C 1.50702 * 119.97165 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47574 * 89.99962 * 8 7 6 10 10 H 1.08997 * 109.47055 * 54.99781 * 9 8 7 11 11 C 1.53004 * 109.46939 * 295.00019 * 9 8 7 12 12 C 1.53004 * 109.47083 * 175.00158 * 9 8 7 13 13 C 1.50700 * 109.46723 * 184.99792 * 12 9 8 14 14 O 1.21282 * 120.00254 * 0.02562 * 13 12 9 15 15 N 1.34778 * 119.99819 * 179.97438 * 13 12 9 16 16 C 1.47021 * 125.64744 * 359.96801 * 15 13 12 17 17 C 1.54326 * 107.27002 * 181.08547 * 16 15 13 18 18 C 1.55151 * 102.94313 * 22.19392 * 17 16 15 19 19 O 1.42901 * 111.00842 * 82.56580 * 18 17 16 20 20 C 1.50698 * 111.00641 * 206.42337 * 18 17 16 21 21 H 1.07993 * 120.00138 * 112.19363 * 20 18 17 22 22 C 1.37875 * 119.99529 * 292.19405 * 20 18 17 23 23 N 1.31514 * 120.00358 * 359.97438 * 22 20 18 24 24 Si 1.86808 * 119.99716 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47193 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47196 * 119.99989 * 24 22 20 27 27 H 1.48495 * 109.46989 * 240.00003 * 24 22 20 28 28 C 1.47421 * 125.64805 * 179.97438 * 15 13 12 29 29 C 1.38165 * 120.05854 * 0.27768 * 7 6 5 30 30 H 1.09007 * 109.46847 * 300.00219 * 1 2 3 31 31 H 1.09002 * 109.46935 * 59.99803 * 1 2 3 32 32 H 1.08991 * 109.47615 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.03343 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.97320 * 179.97438 * 5 4 3 35 35 H 1.07997 * 119.94878 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.46816 * 329.99265 * 8 7 6 37 37 H 1.09001 * 109.46832 * 210.00165 * 8 7 6 38 38 H 1.08994 * 109.47069 * 59.99832 * 11 9 8 39 39 H 1.08997 * 109.46929 * 179.97438 * 11 9 8 40 40 H 1.09006 * 109.46910 * 300.00013 * 11 9 8 41 41 H 1.08995 * 109.47243 * 64.99865 * 12 9 8 42 42 H 1.08996 * 109.46877 * 304.99542 * 12 9 8 43 43 H 1.08996 * 109.88310 * 300.50411 * 16 15 13 44 44 H 1.09002 * 109.88672 * 61.51452 * 16 15 13 45 45 H 1.09000 * 110.72348 * 263.82382 * 17 16 15 46 46 H 1.09003 * 110.71705 * 140.55404 * 17 16 15 47 47 H 0.96708 * 113.99322 * 67.80350 * 19 18 17 48 48 H 0.96999 * 120.00046 * 179.97438 * 23 22 20 49 49 H 1.09002 * 110.36865 * 37.00989 * 28 15 13 50 50 H 1.09001 * 110.37117 * 274.68307 * 28 15 13 51 51 H 1.07998 * 120.03003 * 179.74090 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9211 3.6046 0.0000 6 6 3.3021 3.6756 -0.0016 7 6 4.0561 2.5169 -0.0017 8 6 5.5610 2.5978 -0.0029 9 6 6.0714 2.6258 1.4391 10 1 5.6831 1.7621 1.9788 11 6 5.5975 3.9098 2.1230 12 6 7.6008 2.5822 1.4397 13 6 8.1000 2.4859 2.8583 14 8 7.3103 2.4547 3.7783 15 7 9.4240 2.4334 3.1047 16 6 10.4864 2.4607 2.0887 17 6 11.8343 2.3511 2.8322 18 6 11.4346 1.6991 4.1821 19 8 11.3286 0.2798 4.0541 20 6 12.4087 2.0698 5.2705 21 1 12.0925 2.7046 6.0850 22 6 13.7037 1.5986 5.2264 23 7 14.0886 0.8252 4.2348 24 14 14.9115 2.0588 6.5752 25 1 14.2355 2.9318 7.5682 26 1 15.3950 0.8265 7.2482 27 1 16.0638 2.7833 5.9817 28 6 10.0469 2.3390 4.4376 29 6 3.4312 1.2846 -0.0061 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 0.2129 2.3204 0.0005 34 1 1.3343 4.5113 0.0000 35 1 3.7926 4.6378 -0.0024 36 1 5.8755 3.5058 -0.5175 37 1 5.9711 1.7284 -0.5168 38 1 4.5080 3.9409 2.1226 39 1 5.9608 3.9295 3.1505 40 1 5.9859 4.7735 1.5833 41 1 7.9904 3.4896 0.9783 42 1 7.9397 1.7133 0.8755 43 1 10.3693 1.6181 1.4073 44 1 10.4427 3.3965 1.5316 45 1 12.2670 3.3384 2.9939 46 1 12.5258 1.7108 2.2845 47 1 12.1724 -0.1646 3.8932 48 1 14.9998 0.4941 4.2036 49 1 9.4502 1.7025 5.0910 50 1 10.1611 3.3312 4.8741 51 1 4.0207 0.3797 -0.0104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823528618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:00 Heat of formation + Delta-G solvation = -130.514058 kcal Electronic energy + Delta-G solvation = -30262.069789 eV Core-core repulsion = 26125.270744 eV Total energy + Delta-G solvation = -4136.799045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.26486 -40.95980 -39.29488 -38.66820 -36.42567 -36.02123 -34.13999 -32.51997 -31.69992 -31.18903 -30.08573 -28.68773 -28.33933 -27.35880 -26.61206 -23.99250 -23.47365 -22.47755 -21.58466 -20.99698 -19.99158 -19.16759 -18.73964 -17.94735 -17.21772 -16.97904 -16.88581 -16.83253 -16.66606 -16.60044 -15.98894 -15.50911 -15.39678 -15.15888 -14.85978 -14.50809 -14.46797 -14.15351 -13.95894 -13.72354 -13.51289 -13.38895 -13.20791 -13.15390 -12.97637 -12.85140 -12.65271 -12.62207 -12.52738 -12.45491 -12.26068 -12.11609 -11.96904 -11.84743 -11.75716 -11.55868 -11.53505 -11.28714 -10.75442 -10.59491 -10.13813 -9.71956 -9.50401 -9.10345 -8.25731 -6.40045 0.38984 0.52957 1.40363 1.44922 1.54803 1.72392 2.13315 2.39115 2.40570 2.82615 2.99282 3.61833 3.72716 3.86313 3.89942 4.00520 4.05115 4.10933 4.26588 4.29908 4.31647 4.37293 4.38367 4.43963 4.47168 4.56102 4.59924 4.62241 4.64385 4.71279 4.75720 4.79032 4.80753 4.91888 4.93401 5.08104 5.11594 5.20213 5.20913 5.32655 5.36860 5.45535 5.46491 5.53147 5.54125 5.54996 5.74247 5.77848 5.89492 6.06234 6.48555 6.62828 6.72722 7.25820 7.31498 7.45680 8.80789 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.001814 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.418628 B =15433.513578 C =15721.626442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.109 3.891 4 C -0.220 4.220 5 C -0.084 4.084 6 C -0.157 4.157 7 C -0.042 4.042 8 C -0.070 4.070 9 C -0.062 4.062 10 H 0.049 0.951 11 C -0.149 4.149 12 C -0.121 4.121 13 C 0.514 3.486 14 O -0.590 6.590 15 N -0.614 5.614 16 C 0.107 3.893 17 C -0.131 4.131 18 C 0.232 3.768 19 O -0.596 6.596 20 C -0.561 4.561 21 H 0.055 0.945 22 C 0.035 3.965 23 N -0.910 5.910 24 Si 0.961 3.039 25 H -0.274 1.274 26 H -0.281 1.281 27 H -0.273 1.273 28 C 0.124 3.876 29 C -0.173 4.173 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.381 0.619 48 H 0.273 0.727 49 H 0.040 0.960 50 H 0.069 0.931 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.920 5.669 -15.339 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.257 6.257 3 C 0.064 3.936 4 C -0.239 4.239 5 C -0.102 4.102 6 C -0.175 4.175 7 C -0.042 4.042 8 C -0.107 4.107 9 C -0.081 4.081 10 H 0.067 0.933 11 C -0.206 4.206 12 C -0.161 4.161 13 C 0.305 3.695 14 O -0.472 6.472 15 N -0.347 5.347 16 C -0.015 4.015 17 C -0.169 4.169 18 C 0.192 3.808 19 O -0.407 6.407 20 C -0.599 4.599 21 H 0.073 0.927 22 C -0.166 4.166 23 N -0.549 5.549 24 Si 0.787 3.213 25 H -0.199 1.199 26 H -0.207 1.207 27 H -0.199 1.199 28 C 0.001 3.999 29 C -0.192 4.192 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.159 0.841 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.140 0.860 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.232 0.768 48 H 0.082 0.918 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.814 5.496 -14.869 26.966 hybrid contribution 1.234 -0.305 1.159 1.720 sum -20.580 5.191 -13.710 25.267 Atomic orbital electron populations 1.23306 0.76570 1.05387 1.02184 1.86041 1.23449 1.27357 1.88866 1.19241 0.92557 0.84835 0.96965 1.21471 1.00924 0.92168 1.09296 1.21274 0.94825 0.97667 0.96396 1.21260 0.94049 0.98513 1.03681 1.19792 0.96327 0.92060 0.96058 1.20695 0.89793 1.04778 0.95481 1.20737 0.92462 0.99058 0.95858 0.93291 1.21944 1.01207 0.96851 1.00594 1.21771 0.96880 1.06330 0.91082 1.21208 0.79890 0.75202 0.93168 1.90618 1.55005 1.52917 1.48637 1.48760 1.05784 1.71460 1.08654 1.22191 0.86354 1.02366 0.90540 1.22987 0.95168 1.01112 0.97681 1.19801 0.89639 0.78781 0.92570 1.86091 1.37537 1.21691 1.95340 1.21749 0.96277 1.32181 1.09710 0.92676 1.25619 0.99286 0.94049 0.97626 1.69623 1.19495 1.34136 1.31693 0.85462 0.78627 0.78007 0.79218 1.19863 1.20708 1.19877 1.22092 0.93707 0.99044 0.85025 1.20500 0.91860 0.98778 1.08027 0.92003 0.91468 0.86650 0.83779 0.83399 0.84110 0.88170 0.89754 0.92375 0.94070 0.91212 0.86031 0.87289 0.90848 0.88851 0.91635 0.91056 0.76764 0.91784 0.94143 0.91239 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.27 10.50 -92.41 -0.97 -8.24 16 3 C 0.11 2.37 6.69 22.51 0.15 2.52 16 4 C -0.22 -3.81 9.04 22.37 0.20 -3.61 16 5 C -0.08 -1.32 10.04 22.25 0.22 -1.09 16 6 C -0.16 -2.67 7.96 22.28 0.18 -2.49 16 7 C -0.04 -0.83 4.71 -19.88 -0.09 -0.92 16 8 C -0.07 -1.20 4.84 29.85 0.14 -1.05 16 9 C -0.06 -1.45 2.03 -10.79 -0.02 -1.47 16 10 H 0.05 1.45 7.95 -2.39 -0.02 1.43 16 11 C -0.15 -3.58 8.50 71.98 0.61 -2.97 16 12 C -0.12 -2.87 4.37 29.85 0.13 -2.74 16 13 C 0.51 18.50 7.57 87.66 0.66 19.17 16 14 O -0.59 -25.84 14.22 -3.04 -0.04 -25.88 16 15 N -0.61 -23.55 3.33 -811.75 -2.70 -26.25 16 16 C 0.11 3.51 6.49 86.73 0.56 4.08 16 17 C -0.13 -5.40 5.64 31.78 0.18 -5.22 16 18 C 0.23 11.33 0.89 -10.14 -0.01 11.32 16 19 O -0.60 -31.33 13.18 -148.98 -1.96 -33.29 16 20 C -0.56 -29.54 8.25 25.60 0.21 -29.33 16 21 H 0.05 2.93 7.77 -2.91 -0.02 2.91 16 22 C 0.04 1.79 5.30 84.65 0.45 2.24 16 23 N -0.91 -46.42 10.79 21.45 0.23 -46.19 16 24 Si 0.96 41.10 29.54 68.60 2.03 43.12 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 C 0.12 5.72 6.08 86.86 0.53 6.25 16 29 C -0.17 -3.92 9.64 22.37 0.22 -3.71 16 30 H 0.06 0.62 7.66 -2.38 -0.02 0.60 16 31 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 32 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.14 1.77 6.30 -2.91 -0.02 1.75 16 34 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.14 1.85 8.04 -2.91 -0.02 1.82 16 36 H 0.10 1.25 8.09 -2.39 -0.02 1.24 16 37 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 38 H 0.06 1.33 6.27 -2.39 -0.01 1.31 16 39 H 0.04 1.30 5.95 -2.39 -0.01 1.28 16 40 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.06 2.69 8.03 -2.39 -0.02 2.67 16 46 H 0.07 3.09 7.85 -2.39 -0.02 3.07 16 47 H 0.38 20.15 6.93 -74.05 -0.51 19.64 16 48 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 49 H 0.04 2.05 8.04 -2.39 -0.02 2.03 16 50 H 0.07 3.12 8.01 -2.39 -0.02 3.10 16 51 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -67.28 406.60 2.43 -64.85 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: 0.41 Total: 39.56 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.44 Total: -7.68 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -2.47 Total: -72.44 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: -2.98 Total: -67.42 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Total: -67.28 2.43 -64.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.661 kcal (2) G-P(sol) polarization free energy of solvation -67.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds