Wall clock time and date at job start Wed Apr 1 2020 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47107 * 2 1 4 4 O 1.42898 * 109.47410 * 120.00277 * 2 1 3 5 5 C 1.42899 * 114.00055 * 269.99652 * 4 2 1 6 6 C 1.52997 * 109.47446 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47476 * 180.02562 * 6 5 4 8 8 C 1.38232 * 120.00252 * 269.73061 * 7 6 5 9 9 C 1.38234 * 120.00301 * 179.76322 * 8 7 6 10 10 C 1.38232 * 119.99783 * 0.50813 * 9 8 7 11 11 C 1.38233 * 119.99920 * 359.73919 * 10 9 8 12 12 C 1.38232 * 119.99998 * 89.99521 * 7 6 5 13 13 C 1.50702 * 109.46774 * 240.00108 * 2 1 3 14 14 O 1.20823 * 120.00083 * 245.00116 * 13 2 1 15 15 O 1.34229 * 119.99974 * 65.00131 * 13 2 1 16 16 C 1.45204 * 117.00125 * 180.02562 * 15 13 2 17 17 C 1.53038 * 109.45777 * 270.06807 * 16 15 13 18 18 C 1.53189 * 109.31258 * 178.61270 * 17 16 15 19 19 N 1.46927 * 108.77662 * 54.63005 * 18 17 16 20 20 C 1.36945 * 120.63056 * 126.40942 * 19 18 17 21 21 H 1.07998 * 119.99599 * 331.83530 * 20 19 18 22 22 C 1.38808 * 120.00076 * 151.82837 * 20 19 18 23 23 N 1.31621 * 119.99737 * 343.07680 * 22 20 19 24 24 Si 1.86791 * 120.00249 * 163.07338 * 22 20 19 25 25 H 1.48505 * 109.47207 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47375 * 120.00214 * 24 22 20 27 27 H 1.48505 * 109.47285 * 240.00371 * 24 22 20 28 28 C 1.46918 * 118.74110 * 306.39641 * 19 18 17 29 29 C 1.53038 * 109.46199 * 149.99812 * 16 15 13 30 30 H 1.09002 * 109.47542 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46873 * 299.99910 * 1 2 3 32 32 H 1.08995 * 109.47374 * 59.99358 * 1 2 3 33 33 H 1.09004 * 109.46979 * 300.00204 * 5 4 2 34 34 H 1.09005 * 109.47074 * 59.99910 * 5 4 2 35 35 H 1.09002 * 109.46804 * 300.00337 * 6 5 4 36 36 H 1.09005 * 109.46985 * 59.99945 * 6 5 4 37 37 H 1.08007 * 119.99262 * 359.97438 * 8 7 6 38 38 H 1.07998 * 120.00162 * 180.22707 * 9 8 7 39 39 H 1.08002 * 120.00131 * 179.72429 * 10 9 8 40 40 H 1.08002 * 119.99902 * 179.97438 * 11 10 9 41 41 H 1.07999 * 120.00224 * 0.02562 * 12 7 6 42 42 H 1.09000 * 109.45656 * 30.02460 * 16 15 13 43 43 H 1.09001 * 109.49932 * 298.55969 * 17 16 15 44 44 H 1.08999 * 109.50190 * 58.65938 * 17 16 15 45 45 H 1.08997 * 109.58747 * 294.84918 * 18 17 16 46 46 H 1.09000 * 109.70741 * 174.49121 * 18 17 16 47 47 H 0.96999 * 119.99718 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.58876 * 293.81755 * 28 19 18 49 49 H 1.09003 * 109.70676 * 173.46028 * 28 19 18 50 50 H 1.09001 * 109.49536 * 301.33670 * 29 16 15 51 51 H 1.08995 * 109.50031 * 61.40040 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1828 2.2940 6 6 2.7081 -0.6409 3.4791 7 6 2.9119 0.2623 4.6681 8 6 4.1359 0.8717 4.8715 9 6 4.3214 1.7040 5.9595 10 6 3.2860 1.9186 6.8499 11 6 2.0636 1.3052 6.6493 12 6 1.8765 0.4771 5.5585 13 6 2.0322 -0.7104 -1.2305 14 8 2.6505 -1.7428 -1.1220 15 8 1.7927 -0.1962 -2.4471 16 6 2.3058 -0.9343 -3.5874 17 6 3.7199 -0.4491 -3.9144 18 6 4.2711 -1.2537 -5.0957 19 7 3.3256 -1.1567 -6.2162 20 6 3.7475 -0.7425 -7.4514 21 1 4.5932 -0.0763 -7.5377 22 6 3.0885 -1.1789 -8.5924 23 7 2.2929 -2.2258 -8.5330 24 14 3.3304 -0.2804 -10.2121 25 1 4.2674 0.8545 -10.0134 26 1 3.8936 -1.2163 -11.2181 27 1 2.0231 0.2348 -10.6925 28 6 1.9189 -1.5129 -5.9864 29 6 1.3940 -0.7054 -4.7951 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.9321 0.9513 2.0449 34 1 1.2539 0.6546 2.5589 35 1 1.9758 -1.4090 3.7280 36 1 3.6543 -1.1130 3.2145 37 1 4.9462 0.7001 4.1783 38 1 5.2765 2.1830 6.1163 39 1 3.4323 2.5654 7.7024 40 1 1.2548 1.4726 7.3453 41 1 0.9216 -0.0027 5.4022 42 1 2.3329 -1.9977 -3.3493 43 1 3.6901 0.6084 -4.1769 44 1 4.3631 -0.5909 -3.0460 45 1 4.3866 -2.2977 -4.8046 46 1 5.2374 -0.8493 -5.3970 47 1 1.8321 -2.5305 -9.3303 48 1 1.8426 -2.5781 -5.7678 49 1 1.3308 -1.2790 -6.8738 50 1 0.3818 -1.0297 -4.5533 51 1 1.3856 0.3546 -5.0488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835231575.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:18 Heat of formation + Delta-G solvation = -95.858169 kcal Electronic energy + Delta-G solvation = -29708.097909 eV Core-core repulsion = 25572.801656 eV Total energy + Delta-G solvation = -4135.296253 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.50941 -39.74505 -38.47786 -37.24955 -35.75654 -34.06200 -32.76795 -31.67044 -31.29193 -30.33799 -29.61383 -28.76521 -25.68365 -24.69569 -23.75004 -22.97830 -22.34004 -22.06270 -21.35250 -20.48136 -19.32696 -17.65032 -17.44623 -17.02499 -16.75195 -16.40029 -16.14281 -15.63238 -15.37898 -15.05064 -14.84175 -14.42283 -13.89403 -13.82635 -13.69992 -13.56477 -13.40689 -13.21731 -13.05511 -12.93898 -12.73158 -12.53160 -12.44894 -12.23035 -11.79219 -11.54349 -11.45917 -11.44307 -11.30314 -11.22615 -11.06593 -10.77446 -10.71660 -10.44100 -10.28119 -10.17246 -9.98619 -9.81978 -9.63408 -9.44995 -9.32415 -9.13486 -8.51139 -6.74073 -5.83053 -3.25773 0.91116 0.99592 2.33571 2.42253 3.33231 3.35995 3.43869 3.46207 3.65671 4.41228 4.46911 4.47437 4.54785 4.62269 4.65576 4.74215 4.74959 4.78313 4.91434 5.04020 5.11264 5.12451 5.24947 5.34100 5.35502 5.39820 5.41912 5.46515 5.51959 5.54489 5.67023 5.72843 5.73486 5.85773 5.99013 6.05900 6.11646 6.21805 6.22869 6.33262 6.40823 6.49095 6.56688 6.59706 6.71470 6.75439 6.84965 6.95188 7.27059 7.56883 7.77014 7.98115 8.40497 9.16506 9.79182 10.35899 11.26194 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.029128 B = 0.001606 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.043376 B =17426.345699 C =17836.983652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.096 0.904 4 O -0.360 6.360 5 C 0.067 3.933 6 C -0.080 4.080 7 C -0.081 4.081 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.124 4.124 11 C -0.120 4.120 12 C -0.115 4.115 13 C 0.456 3.544 14 O -0.489 6.489 15 O -0.355 6.355 16 C 0.099 3.901 17 C -0.146 4.146 18 C 0.149 3.851 19 N -0.592 5.592 20 C -0.254 4.254 21 H 0.068 0.932 22 C 0.003 3.997 23 N -0.903 5.903 24 Si 0.904 3.096 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.288 1.288 28 C 0.174 3.826 29 C -0.135 4.135 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.022 0.978 46 H 0.061 0.939 47 H 0.254 0.746 48 H 0.022 0.978 49 H 0.097 0.903 50 H 0.058 0.942 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.956 8.599 29.104 30.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.040 3.960 3 H 0.114 0.886 4 O -0.279 6.279 5 C -0.009 4.009 6 C -0.117 4.117 7 C -0.082 4.082 8 C -0.132 4.132 9 C -0.137 4.137 10 C -0.142 4.142 11 C -0.138 4.138 12 C -0.133 4.133 13 C 0.297 3.703 14 O -0.375 6.375 15 O -0.272 6.272 16 C 0.045 3.955 17 C -0.186 4.186 18 C 0.022 3.978 19 N -0.315 5.315 20 C -0.383 4.383 21 H 0.085 0.915 22 C -0.196 4.196 23 N -0.547 5.547 24 Si 0.734 3.266 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.048 3.952 29 C -0.174 4.174 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.040 0.960 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.040 0.960 49 H 0.115 0.885 50 H 0.077 0.923 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.793 7.992 28.938 30.151 hybrid contribution 0.117 0.582 -0.758 0.963 sum -2.676 8.574 28.180 29.577 Atomic orbital electron populations 1.22210 0.92562 1.04069 1.03770 1.21380 0.95516 0.95891 0.83211 0.88585 1.87997 1.86693 1.34390 1.18804 1.22582 0.99872 0.92816 0.85671 1.20465 1.03524 0.96998 0.90715 1.19734 0.94038 0.98130 0.96257 1.21147 0.97009 0.97062 0.97968 1.21181 0.99144 0.98478 0.94868 1.21189 0.93511 0.99996 0.99467 1.21168 0.97480 0.97337 0.97780 1.21112 0.98697 0.98756 0.94690 1.23201 0.77543 0.84129 0.85419 1.90667 1.36726 1.23141 1.87003 1.86524 1.72241 1.53688 1.14776 1.22983 0.94839 0.95817 0.81819 1.22466 0.94551 1.01835 0.99711 1.20862 0.93505 0.96158 0.87280 1.44124 1.03015 1.77883 1.06480 1.19240 1.15000 1.21593 0.82493 0.91465 1.25069 1.00517 0.96203 0.97811 1.70030 1.33127 1.23145 1.28418 0.86202 0.77521 0.79254 0.83663 1.20220 1.21695 1.21502 1.20813 0.85727 0.94364 0.94335 1.22464 0.97381 1.03002 0.94555 0.91034 0.91037 0.89813 0.92786 0.92707 0.89807 0.89712 0.85816 0.85964 0.86122 0.86009 0.85894 0.90279 0.91337 0.92680 0.96014 0.92051 0.93567 0.95961 0.88518 0.92348 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 9.50 37.16 0.35 -1.20 16 2 C 0.10 1.14 3.24 -27.88 -0.09 1.05 16 3 H 0.10 0.89 7.79 -51.93 -0.40 0.48 16 4 O -0.36 -4.38 9.53 -55.14 -0.53 -4.90 16 5 C 0.07 0.58 5.73 37.16 0.21 0.79 16 6 C -0.08 -0.64 5.71 -27.89 -0.16 -0.80 16 7 C -0.08 -0.62 5.13 -104.63 -0.54 -1.16 16 8 C -0.11 -0.84 9.70 -39.59 -0.38 -1.23 16 9 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 10 C -0.12 -0.78 10.05 -39.59 -0.40 -1.18 16 11 C -0.12 -0.77 10.05 -39.58 -0.40 -1.16 16 12 C -0.11 -0.80 9.70 -39.58 -0.38 -1.18 16 13 C 0.46 7.25 7.26 36.01 0.26 7.51 16 14 O -0.49 -9.45 15.73 -25.46 -0.40 -9.85 16 15 O -0.35 -5.90 9.87 -39.26 -0.39 -6.28 16 16 C 0.10 1.86 2.41 -26.69 -0.06 1.79 16 17 C -0.15 -2.76 5.72 -26.61 -0.15 -2.91 16 18 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 19 N -0.59 -14.91 2.99 -172.32 -0.52 -15.42 16 20 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 21 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 22 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 23 N -0.90 -25.97 11.19 55.49 0.62 -25.35 16 24 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 29 C -0.13 -2.62 5.74 -26.61 -0.15 -2.78 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.05 0.39 7.87 -51.93 -0.41 -0.02 16 35 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 38 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.08 1.60 7.16 -51.93 -0.37 1.22 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.10 2.53 6.07 -51.93 -0.31 2.22 16 50 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 417.09 15.07 6.29 6.29 Total: -1.00 -32.15 417.09 -11.14 -43.29 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.63 Total: -0.78 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.56 Total: -3.44 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.11 Total: -40.77 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -1.31 Total: -21.04 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.15 -11.14 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835231575.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.570 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds