Wall clock time and date at job start Wed Apr 1 2020 05:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47107 * 2 1 4 4 O 1.42898 * 109.47410 * 120.00277 * 2 1 3 5 5 C 1.42899 * 114.00055 * 269.99652 * 4 2 1 6 6 C 1.52997 * 109.47446 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47476 * 180.02562 * 6 5 4 8 8 C 1.38232 * 120.00252 * 269.73061 * 7 6 5 9 9 C 1.38234 * 120.00301 * 179.76322 * 8 7 6 10 10 C 1.38232 * 119.99783 * 0.50813 * 9 8 7 11 11 C 1.38233 * 119.99920 * 359.73919 * 10 9 8 12 12 C 1.38232 * 119.99998 * 89.99521 * 7 6 5 13 13 C 1.50702 * 109.46774 * 240.00108 * 2 1 3 14 14 O 1.20823 * 120.00083 * 245.00116 * 13 2 1 15 15 O 1.34229 * 119.99974 * 65.00131 * 13 2 1 16 16 C 1.45204 * 117.00125 * 180.02562 * 15 13 2 17 17 C 1.53038 * 109.45777 * 270.06807 * 16 15 13 18 18 C 1.53189 * 109.31258 * 178.61270 * 17 16 15 19 19 N 1.46927 * 108.77662 * 54.63005 * 18 17 16 20 20 C 1.36945 * 120.63056 * 126.40942 * 19 18 17 21 21 H 1.07998 * 119.99599 * 331.83530 * 20 19 18 22 22 C 1.38808 * 120.00076 * 151.82837 * 20 19 18 23 23 N 1.31621 * 119.99737 * 343.07680 * 22 20 19 24 24 Si 1.86791 * 120.00249 * 163.07338 * 22 20 19 25 25 H 1.48505 * 109.47207 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47375 * 120.00214 * 24 22 20 27 27 H 1.48505 * 109.47285 * 240.00371 * 24 22 20 28 28 C 1.46918 * 118.74110 * 306.39641 * 19 18 17 29 29 C 1.53038 * 109.46199 * 149.99812 * 16 15 13 30 30 H 1.09002 * 109.47542 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46873 * 299.99910 * 1 2 3 32 32 H 1.08995 * 109.47374 * 59.99358 * 1 2 3 33 33 H 1.09004 * 109.46979 * 300.00204 * 5 4 2 34 34 H 1.09005 * 109.47074 * 59.99910 * 5 4 2 35 35 H 1.09002 * 109.46804 * 300.00337 * 6 5 4 36 36 H 1.09005 * 109.46985 * 59.99945 * 6 5 4 37 37 H 1.08007 * 119.99262 * 359.97438 * 8 7 6 38 38 H 1.07998 * 120.00162 * 180.22707 * 9 8 7 39 39 H 1.08002 * 120.00131 * 179.72429 * 10 9 8 40 40 H 1.08002 * 119.99902 * 179.97438 * 11 10 9 41 41 H 1.07999 * 120.00224 * 0.02562 * 12 7 6 42 42 H 1.09000 * 109.45656 * 30.02460 * 16 15 13 43 43 H 1.09001 * 109.49932 * 298.55969 * 17 16 15 44 44 H 1.08999 * 109.50190 * 58.65938 * 17 16 15 45 45 H 1.08997 * 109.58747 * 294.84918 * 18 17 16 46 46 H 1.09000 * 109.70741 * 174.49121 * 18 17 16 47 47 H 0.96999 * 119.99718 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.58876 * 293.81755 * 28 19 18 49 49 H 1.09003 * 109.70676 * 173.46028 * 28 19 18 50 50 H 1.09001 * 109.49536 * 301.33670 * 29 16 15 51 51 H 1.08995 * 109.50031 * 61.40040 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1828 2.2940 6 6 2.7081 -0.6409 3.4791 7 6 2.9119 0.2623 4.6681 8 6 4.1359 0.8717 4.8715 9 6 4.3214 1.7040 5.9595 10 6 3.2860 1.9186 6.8499 11 6 2.0636 1.3052 6.6493 12 6 1.8765 0.4771 5.5585 13 6 2.0322 -0.7104 -1.2305 14 8 2.6505 -1.7428 -1.1220 15 8 1.7927 -0.1962 -2.4471 16 6 2.3058 -0.9343 -3.5874 17 6 3.7199 -0.4491 -3.9144 18 6 4.2711 -1.2537 -5.0957 19 7 3.3256 -1.1567 -6.2162 20 6 3.7475 -0.7425 -7.4514 21 1 4.5932 -0.0763 -7.5377 22 6 3.0885 -1.1789 -8.5924 23 7 2.2929 -2.2258 -8.5330 24 14 3.3304 -0.2804 -10.2121 25 1 4.2674 0.8545 -10.0134 26 1 3.8936 -1.2163 -11.2181 27 1 2.0231 0.2348 -10.6925 28 6 1.9189 -1.5129 -5.9864 29 6 1.3940 -0.7054 -4.7951 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.9321 0.9513 2.0449 34 1 1.2539 0.6546 2.5589 35 1 1.9758 -1.4090 3.7280 36 1 3.6543 -1.1130 3.2145 37 1 4.9462 0.7001 4.1783 38 1 5.2765 2.1830 6.1163 39 1 3.4323 2.5654 7.7024 40 1 1.2548 1.4726 7.3453 41 1 0.9216 -0.0027 5.4022 42 1 2.3329 -1.9977 -3.3493 43 1 3.6901 0.6084 -4.1769 44 1 4.3631 -0.5909 -3.0460 45 1 4.3866 -2.2977 -4.8046 46 1 5.2374 -0.8493 -5.3970 47 1 1.8321 -2.5305 -9.3303 48 1 1.8426 -2.5781 -5.7678 49 1 1.3308 -1.2790 -6.8738 50 1 0.3818 -1.0297 -4.5533 51 1 1.3856 0.3546 -5.0488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835231575.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:17 Heat of formation + Delta-G solvation = -110.733595 kcal Electronic energy + Delta-G solvation = -29708.742956 eV Core-core repulsion = 25572.801656 eV Total energy + Delta-G solvation = -4135.941300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.80666 -40.29207 -39.54019 -38.70660 -37.26204 -34.78043 -34.52726 -32.64195 -32.01615 -31.76141 -31.41224 -29.35660 -27.32806 -25.93658 -24.54158 -23.99355 -23.67095 -23.45252 -21.99213 -21.65290 -21.05296 -18.93188 -18.83405 -18.13849 -17.65848 -17.47657 -17.06643 -16.81009 -16.60804 -15.90230 -15.85148 -15.70509 -15.42792 -15.21284 -14.91609 -14.69658 -14.37742 -14.27391 -14.15870 -14.05843 -13.79576 -13.58708 -13.33162 -13.26835 -13.09260 -12.96570 -12.71541 -12.64462 -12.47271 -12.40795 -12.23978 -12.13777 -11.96626 -11.94196 -11.86206 -11.81411 -11.52293 -11.33605 -11.09643 -10.71786 -10.57871 -9.81088 -9.64010 -8.77086 -7.91111 -5.37446 0.40793 0.51000 1.08979 1.28651 1.47993 1.49667 1.60498 2.50328 2.65661 2.95395 3.25386 3.44524 3.59673 3.76386 3.80852 3.82310 3.88034 3.92888 3.95972 4.12885 4.18273 4.19942 4.25075 4.32449 4.34336 4.42721 4.54379 4.61394 4.65318 4.66554 4.70578 4.73033 4.82476 4.84957 4.92466 4.93248 4.97391 5.02353 5.17452 5.18609 5.19208 5.19646 5.37620 5.45679 5.58581 5.61849 5.64653 5.67172 5.71474 5.97826 6.13007 6.35451 6.69198 7.10284 7.78271 8.31654 9.16837 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.029128 B = 0.001606 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.043376 B =17426.345699 C =17836.983652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.104 3.896 3 H 0.126 0.874 4 O -0.386 6.386 5 C 0.065 3.935 6 C -0.076 4.076 7 C -0.091 4.091 8 C -0.129 4.129 9 C -0.128 4.128 10 C -0.130 4.130 11 C -0.126 4.126 12 C -0.123 4.123 13 C 0.453 3.547 14 O -0.529 6.529 15 O -0.346 6.346 16 C 0.105 3.895 17 C -0.133 4.133 18 C 0.146 3.854 19 N -0.609 5.609 20 C -0.266 4.266 21 H 0.070 0.930 22 C -0.048 4.048 23 N -0.935 5.935 24 Si 0.971 3.029 25 H -0.266 1.266 26 H -0.293 1.293 27 H -0.287 1.287 28 C 0.180 3.820 29 C -0.120 4.120 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.012 0.988 46 H 0.067 0.933 47 H 0.252 0.748 48 H -0.001 1.001 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.488 10.955 30.883 32.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.143 0.857 4 O -0.305 6.305 5 C -0.010 4.010 6 C -0.113 4.113 7 C -0.091 4.091 8 C -0.147 4.147 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.141 4.141 13 C 0.296 3.704 14 O -0.418 6.418 15 O -0.263 6.263 16 C 0.051 3.949 17 C -0.172 4.172 18 C 0.020 3.980 19 N -0.333 5.333 20 C -0.396 4.396 21 H 0.088 0.912 22 C -0.244 4.244 23 N -0.581 5.581 24 Si 0.799 3.201 25 H -0.190 1.190 26 H -0.220 1.220 27 H -0.214 1.214 28 C 0.054 3.946 29 C -0.159 4.159 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.029 0.971 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.017 0.983 49 H 0.088 0.912 50 H 0.097 0.903 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.322 10.372 30.753 32.625 hybrid contribution 0.326 -0.189 -1.189 1.247 sum -2.995 10.183 29.564 31.412 Atomic orbital electron populations 1.22224 0.90524 1.03825 1.05528 1.21562 0.96790 0.96163 0.80991 0.85686 1.87972 1.86971 1.35979 1.19615 1.22753 1.01100 0.92579 0.84605 1.20405 1.02875 0.97100 0.90924 1.19739 0.94510 0.98493 0.96397 1.21308 0.97202 0.97603 0.98589 1.21433 1.00068 0.98385 0.94703 1.21503 0.93376 1.00030 0.99895 1.21466 0.98150 0.96897 0.97876 1.21322 0.99056 0.98984 0.94769 1.24273 0.76375 0.83765 0.85986 1.90656 1.38687 1.25084 1.87324 1.86522 1.72017 1.52980 1.14764 1.22650 0.94641 0.95112 0.82533 1.22271 0.94723 1.01449 0.98735 1.20951 0.93478 0.96168 0.87384 1.44373 1.04036 1.78046 1.06829 1.19568 1.15024 1.21414 0.83585 0.91212 1.25840 1.00611 0.96902 1.01011 1.70180 1.34242 1.24599 1.29085 0.85161 0.77437 0.78150 0.79382 1.19011 1.22038 1.21395 1.20597 0.85273 0.93722 0.95040 1.22176 0.98314 1.02271 0.93131 0.92292 0.88145 0.89179 0.92224 0.90699 0.89823 0.90909 0.85613 0.84550 0.84247 0.84132 0.84735 0.92062 0.90674 0.91471 0.97050 0.91447 0.93897 0.98296 0.91170 0.90299 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.50 71.98 0.68 -1.88 16 2 C 0.10 2.16 3.24 29.85 0.10 2.25 16 3 H 0.13 1.88 7.79 -2.39 -0.02 1.86 16 4 O -0.39 -8.81 9.53 -129.95 -1.24 -10.04 16 5 C 0.07 1.00 5.73 71.98 0.41 1.42 16 6 C -0.08 -1.15 5.71 29.85 0.17 -0.98 16 7 C -0.09 -1.30 5.13 -19.87 -0.10 -1.40 16 8 C -0.13 -1.81 9.70 22.27 0.22 -1.59 16 9 C -0.13 -1.54 10.05 22.27 0.22 -1.32 16 10 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16 11 C -0.13 -1.36 10.05 22.27 0.22 -1.14 16 12 C -0.12 -1.52 9.70 22.27 0.22 -1.30 16 13 C 0.45 13.85 7.26 71.24 0.52 14.37 16 14 O -0.53 -20.44 15.73 28.39 0.45 -19.99 16 15 O -0.35 -10.92 9.87 -51.41 -0.51 -11.43 16 16 C 0.11 3.88 2.41 30.62 0.07 3.95 16 17 C -0.13 -4.89 5.72 30.67 0.18 -4.71 16 18 C 0.15 6.35 6.52 86.36 0.56 6.91 16 19 N -0.61 -31.06 2.99 -699.11 -2.09 -33.15 16 20 C -0.27 -14.61 9.58 84.03 0.81 -13.81 16 21 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 22 C -0.05 -2.67 4.92 84.86 0.42 -2.25 16 23 N -0.94 -55.04 11.19 21.65 0.24 -54.80 16 24 Si 0.97 44.41 29.59 68.60 2.03 46.44 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 28 C 0.18 8.74 5.30 86.36 0.46 9.20 16 29 C -0.12 -4.60 5.74 30.67 0.18 -4.42 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.01 7.87 -2.38 -0.02 0.99 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.06 0.84 8.09 -2.39 -0.02 0.82 16 34 H 0.07 0.85 7.87 -2.38 -0.02 0.83 16 35 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 36 H 0.07 1.25 8.08 -2.38 -0.02 1.23 16 37 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.14 0.89 8.06 -2.91 -0.02 0.87 16 40 H 0.14 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.13 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.06 2.50 7.16 -2.39 -0.02 2.49 16 43 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.07 2.80 7.93 -2.39 -0.02 2.78 16 47 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 48 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 49 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 50 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 51 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -70.15 417.09 5.32 -64.83 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.89 Total: 16.04 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 5.55 Total: 2.10 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -1.85 Total: -87.95 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.30 Total: -41.46 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -70.15 5.32 -64.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835231575.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.908 kcal (2) G-P(sol) polarization free energy of solvation -70.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds