Wall clock time and date at job start Wed Apr 1 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99763 * 2 1 4 4 C 1.53000 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.52994 * 110.01636 * 53.75915 * 4 3 2 6 6 N 1.46499 * 109.47610 * 66.03446 * 5 4 3 7 7 C 1.34777 * 120.00229 * 184.95307 * 6 5 4 8 8 O 1.21280 * 119.99775 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99852 * 180.02562 * 7 6 5 10 10 C 1.50696 * 109.47228 * 180.02562 * 9 7 6 11 11 C 1.38300 * 119.92930 * 269.72622 * 10 9 7 12 12 C 1.38105 * 120.06672 * 179.72050 * 11 10 9 13 13 C 1.38882 * 119.93159 * 0.57495 * 12 11 10 14 14 O 1.35744 * 120.06931 * 179.68261 * 13 12 11 15 15 C 1.34829 * 116.99844 * 174.39834 * 14 13 12 16 16 H 1.07994 * 120.00304 * 5.06274 * 15 14 13 17 17 C 1.38661 * 119.99691 * 185.06384 * 15 14 13 18 18 N 1.31550 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99780 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46910 * 89.99939 * 19 17 15 21 21 H 1.48502 * 109.46978 * 209.99940 * 19 17 15 22 22 H 1.48507 * 109.46995 * 329.99705 * 19 17 15 23 23 C 1.38875 * 119.85931 * 359.69762 * 13 12 11 24 24 C 1.38100 * 119.93116 * 0.02562 * 23 13 12 25 25 C 1.54262 * 110.03104 * 292.31637 * 4 3 2 26 26 C 1.54887 * 104.19871 * 264.32526 * 25 4 3 27 27 C 1.54894 * 102.74843 * 322.05732 * 26 25 4 28 28 C 1.53872 * 110.03359 * 175.14982 * 4 3 2 29 29 H 1.08999 * 109.47190 * 300.00160 * 1 2 3 30 30 H 1.09003 * 109.47303 * 60.00241 * 1 2 3 31 31 H 1.09002 * 109.47065 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47320 * 59.99819 * 3 2 1 33 33 H 1.09005 * 109.47443 * 299.99983 * 3 2 1 34 34 H 1.09004 * 109.47249 * 186.03612 * 5 4 3 35 35 H 1.09001 * 109.47315 * 306.03468 * 5 4 3 36 36 H 0.97004 * 119.99825 * 4.95505 * 6 5 4 37 37 H 1.09002 * 109.47274 * 299.99909 * 9 7 6 38 38 H 1.09001 * 109.47502 * 59.99588 * 9 7 6 39 39 H 1.08000 * 119.96731 * 359.97438 * 11 10 9 40 40 H 1.07998 * 120.03373 * 180.27295 * 12 11 10 41 41 H 0.97001 * 119.99674 * 180.02562 * 18 17 15 42 42 H 1.07999 * 120.03616 * 179.97438 * 23 13 12 43 43 H 1.08011 * 119.96235 * 179.97438 * 24 23 13 44 44 H 1.09001 * 110.49039 * 145.64365 * 25 4 3 45 45 H 1.08998 * 110.48869 * 23.00388 * 25 4 3 46 46 H 1.08994 * 110.75896 * 203.74540 * 26 25 4 47 47 H 1.08998 * 110.75813 * 80.36736 * 26 25 4 48 48 H 1.09003 * 110.48872 * 156.61735 * 27 26 25 49 49 H 1.08992 * 110.48694 * 279.13626 * 27 26 25 50 50 H 1.08999 * 110.03327 * 0.02562 * 28 4 3 51 51 H 1.09003 * 110.03159 * 238.57158 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9899 0.2964 -1.1604 6 7 3.6806 0.9562 -2.4313 7 6 3.9012 0.3137 -3.5954 8 8 4.3554 -0.8108 -3.5907 9 6 3.5834 0.9927 -4.9027 10 6 3.9184 0.0672 -6.0438 11 6 5.1811 0.0955 -6.6074 12 6 5.4929 -0.7555 -7.6495 13 6 4.5333 -1.6319 -8.1394 14 8 4.8348 -2.4650 -9.1678 15 6 3.8980 -3.3691 -9.5179 16 1 2.9284 -3.3538 -9.0426 17 6 4.1794 -4.3187 -10.4883 18 7 5.3603 -4.3371 -11.0677 19 14 2.8816 -5.5719 -10.9730 20 1 2.0660 -5.0328 -12.0906 21 1 3.5441 -6.8288 -11.4050 22 1 2.0032 -5.8504 -9.8084 23 6 3.2646 -1.6539 -7.5750 24 6 2.9607 -0.8045 -6.5294 25 6 4.0193 0.5942 1.3398 26 6 4.3883 1.8349 2.1904 27 6 5.0245 2.7873 1.1476 28 6 4.1745 2.5791 -0.1229 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 5.0647 0.1289 -1.0902 35 1 3.4692 -0.6599 -1.1114 36 1 3.3169 1.8555 -2.4350 37 1 2.5223 1.2398 -4.9353 38 1 4.1719 1.9060 -4.9903 39 1 5.9252 0.7808 -6.2295 40 1 6.4804 -0.7360 -8.0862 41 1 5.5570 -5.0012 -11.7468 42 1 2.5161 -2.3340 -7.9540 43 1 1.9740 -0.8209 -6.0903 44 1 4.8948 -0.0364 1.1851 45 1 3.2200 0.0279 1.8179 46 1 5.1096 1.5721 2.9641 47 1 3.4961 2.2823 2.6284 48 1 4.9587 3.8215 1.4854 49 1 6.0630 2.5123 0.9634 50 1 3.3981 3.3419 -0.1813 51 1 4.8091 2.6227 -1.0080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837111142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:54 Heat of formation + Delta-G solvation = -124.582134 kcal Electronic energy + Delta-G solvation = -30105.794759 eV Core-core repulsion = 25969.252941 eV Total energy + Delta-G solvation = -4136.541818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.27873 -40.71287 -39.87555 -38.19646 -37.91776 -35.44335 -34.39652 -32.95685 -31.78326 -31.55318 -29.64906 -28.64493 -27.77210 -27.10188 -26.20504 -24.74877 -23.63154 -22.60741 -21.71504 -20.95471 -19.91018 -19.82073 -18.85595 -18.11288 -17.27142 -17.14959 -16.85755 -16.69614 -16.52464 -16.29873 -15.87491 -15.75551 -15.73543 -15.50542 -15.09958 -14.98775 -14.52576 -14.40600 -14.28909 -14.18167 -13.94573 -13.58715 -13.45694 -13.03782 -12.96468 -12.74066 -12.47961 -12.33776 -12.28893 -12.24151 -12.13248 -11.97499 -11.95593 -11.85887 -11.75680 -11.39132 -11.36178 -11.17721 -10.89120 -10.72205 -10.55673 -9.98673 -9.75747 -8.89312 -8.47457 -6.15520 0.61981 0.68098 1.33108 1.43013 1.51370 1.78549 2.17331 2.29559 2.83128 2.89201 3.18339 3.52878 3.53570 3.62738 3.81262 3.88063 4.05953 4.16899 4.18944 4.24724 4.31540 4.35332 4.41544 4.50038 4.52478 4.55518 4.57964 4.60514 4.64092 4.71848 4.79074 4.81468 4.82525 4.87081 4.90921 5.00653 5.09005 5.09909 5.11979 5.14872 5.26701 5.31084 5.33582 5.41521 5.49912 5.55910 5.57254 5.71969 5.78869 6.02904 6.23794 6.28312 6.67222 6.96991 7.41687 7.78590 8.76035 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.001938 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.319357 B =14448.068313 C =15262.701482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.072 3.928 4 C -0.063 4.063 5 C 0.139 3.861 6 N -0.714 5.714 7 C 0.508 3.492 8 O -0.584 6.584 9 C -0.077 4.077 10 C -0.144 4.144 11 C -0.058 4.058 12 C -0.206 4.206 13 C 0.111 3.889 14 O -0.233 6.233 15 C -0.414 4.414 16 H 0.099 0.901 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.256 1.256 23 C -0.244 4.244 24 C -0.061 4.061 25 C -0.113 4.113 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.117 4.117 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.414 0.586 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.148 0.852 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.089 0.911 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.464 20.257 28.472 36.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.005 4.005 4 C -0.064 4.064 5 C 0.015 3.985 6 N -0.368 5.368 7 C 0.296 3.704 8 O -0.463 6.463 9 C -0.116 4.116 10 C -0.146 4.146 11 C -0.076 4.076 12 C -0.226 4.226 13 C 0.061 3.939 14 O -0.140 6.140 15 C -0.490 4.490 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.180 1.180 23 C -0.263 4.263 24 C -0.079 4.079 25 C -0.151 4.151 26 C -0.158 4.158 27 C -0.160 4.160 28 C -0.154 4.154 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.252 0.748 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.079 0.921 50 H 0.107 0.893 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.725 19.168 28.197 35.194 hybrid contribution -0.488 -0.726 -0.671 1.102 sum -9.212 18.442 27.526 34.390 Atomic orbital electron populations 1.22835 0.80004 1.03176 1.00787 1.87888 1.20834 1.28949 1.95520 1.22710 0.92077 0.84439 1.01227 1.21469 0.93991 0.96379 0.94529 1.21229 0.98969 0.95965 0.82318 1.45858 1.66365 1.19760 1.04775 1.21205 0.76827 0.85836 0.86519 1.90756 1.45918 1.21404 1.88207 1.20535 1.05942 0.98109 0.87034 1.19267 0.94163 1.01367 0.99753 1.20885 0.96461 0.96846 0.93374 1.20449 0.98610 1.01082 1.02413 1.19935 0.94452 0.91351 0.88166 1.83933 1.43553 1.42678 1.43869 1.21812 0.94889 1.09619 1.22701 0.88347 1.26626 1.00244 0.99680 0.95689 1.70188 1.23154 1.36252 1.26350 0.84576 0.76263 0.76035 0.79226 1.18400 1.19475 1.17978 1.21221 0.96781 1.05564 1.02783 1.20927 0.99684 0.93426 0.93906 1.22375 1.00738 0.98137 0.93841 1.22501 1.00896 0.94943 0.97468 1.22349 0.98956 1.00206 0.94525 1.22285 0.99758 0.94098 0.99287 0.92715 0.93483 0.89870 0.91539 0.92207 0.93210 0.93442 0.74838 0.85500 0.84922 0.83475 0.86962 0.91833 0.86556 0.84583 0.92166 0.91499 0.91137 0.90648 0.90152 0.92062 0.89270 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.14 9.27 -148.98 -1.38 -8.53 16 3 C 0.07 0.81 4.33 71.98 0.31 1.12 16 4 C -0.06 -0.77 0.49 -51.46 -0.03 -0.80 16 5 C 0.14 2.74 4.26 86.38 0.37 3.10 16 6 N -0.71 -12.36 4.77 -463.07 -2.21 -14.57 16 7 C 0.51 13.09 7.82 87.66 0.69 13.78 16 8 O -0.58 -22.61 16.03 -3.03 -0.05 -22.65 16 9 C -0.08 -1.59 5.83 29.10 0.17 -1.42 16 10 C -0.14 -4.78 4.38 -19.84 -0.09 -4.87 16 11 C -0.06 -2.10 9.69 22.25 0.22 -1.88 16 12 C -0.21 -9.54 9.99 22.39 0.22 -9.32 16 13 C 0.11 5.97 6.65 22.58 0.15 6.12 16 14 O -0.23 -14.90 9.76 -22.66 -0.22 -15.12 16 15 C -0.41 -25.44 9.49 67.92 0.64 -24.79 16 16 H 0.10 5.60 5.20 -2.91 -0.02 5.58 16 17 C -0.03 -1.50 5.49 84.84 0.47 -1.03 16 18 N -0.92 -58.66 13.67 21.61 0.30 -58.36 16 19 Si 1.02 44.83 29.55 68.60 2.03 46.85 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 23 C -0.24 -11.59 9.17 22.39 0.21 -11.39 16 24 C -0.06 -2.32 9.69 22.25 0.22 -2.10 16 25 C -0.11 -1.46 5.84 31.67 0.18 -1.27 16 26 C -0.12 -1.04 6.91 31.89 0.22 -0.82 16 27 C -0.12 -0.94 6.83 31.67 0.22 -0.73 16 28 C -0.12 -0.90 5.35 31.32 0.17 -0.73 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.52 7.57 -2.38 -0.02 0.50 16 34 H 0.05 1.12 8.02 -2.38 -0.02 1.10 16 35 H 0.05 1.26 7.37 -2.39 -0.02 1.25 16 36 H 0.41 3.91 7.12 -92.70 -0.66 3.25 16 37 H 0.13 1.83 8.08 -2.39 -0.02 1.81 16 38 H 0.13 1.78 8.08 -2.39 -0.02 1.76 16 39 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 41 H 0.27 15.85 8.31 -92.71 -0.77 15.07 16 42 H 0.12 5.59 5.64 -2.91 -0.02 5.58 16 43 H 0.14 4.19 8.06 -2.90 -0.02 4.16 16 44 H 0.06 0.91 7.77 -2.39 -0.02 0.89 16 45 H 0.07 0.97 7.53 -2.39 -0.02 0.96 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.09 0.35 7.67 -2.39 -0.02 0.33 16 51 H 0.07 0.63 7.07 -2.39 -0.02 0.61 16 Total: -1.00 -86.07 412.33 4.31 -81.76 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.27 Total: 26.05 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 5.58 Total: -35.44 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.91 Total: -72.93 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -1.65 Total: -46.30 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -86.07 4.31 -81.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837111142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.823 kcal (2) G-P(sol) polarization free energy of solvation -86.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds