Wall clock time and date at job start Wed Apr 1 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99859 * 2 1 4 4 C 1.52994 * 109.47552 * 307.03313 * 3 2 1 5 5 C 1.52999 * 109.46960 * 187.03095 * 3 2 1 6 6 H 1.09001 * 109.47028 * 185.04611 * 5 3 2 7 7 C 1.53002 * 109.47130 * 305.04054 * 5 3 2 8 8 N 1.46497 * 109.47306 * 65.04663 * 5 3 2 9 9 C 1.34781 * 120.00182 * 155.00063 * 8 5 3 10 10 O 1.21278 * 119.99790 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99882 * 179.97438 * 9 8 5 12 12 C 1.50693 * 109.46848 * 179.97438 * 11 9 8 13 13 C 1.38300 * 119.93619 * 269.72966 * 12 11 9 14 14 C 1.38099 * 120.07236 * 179.72833 * 13 12 11 15 15 C 1.38872 * 119.92778 * 0.56660 * 14 13 12 16 16 O 1.35755 * 120.06595 * 179.68441 * 15 14 13 17 17 C 1.34834 * 117.00056 * 185.50551 * 16 15 14 18 18 H 1.08005 * 119.99915 * 4.98626 * 17 16 15 19 19 C 1.38652 * 120.00360 * 184.98926 * 17 16 15 20 20 N 1.31557 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00103 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47196 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46926 * 119.99927 * 21 19 17 24 24 H 1.48499 * 109.46947 * 239.99426 * 21 19 17 25 25 C 1.38875 * 119.86645 * 359.70537 * 15 14 13 26 26 C 1.38100 * 119.92856 * 359.97438 * 25 15 14 27 27 C 1.53003 * 109.46823 * 67.03443 * 3 2 1 28 28 C 1.53002 * 117.49926 * 5.55543 * 27 3 2 29 29 C 1.52996 * 117.49802 * 296.89866 * 27 3 2 30 30 H 1.09007 * 109.46734 * 288.05294 * 1 2 3 31 31 H 1.08998 * 109.47962 * 48.05403 * 1 2 3 32 32 H 1.08995 * 109.47344 * 168.06442 * 1 2 3 33 33 H 1.09004 * 109.47135 * 59.99571 * 4 3 2 34 34 H 1.09000 * 109.47101 * 180.02562 * 4 3 2 35 35 H 1.09006 * 109.47132 * 299.99561 * 4 3 2 36 36 H 1.08997 * 109.47698 * 304.95255 * 7 5 3 37 37 H 1.08998 * 109.46872 * 64.95277 * 7 5 3 38 38 H 1.09004 * 109.47232 * 184.94881 * 7 5 3 39 39 H 0.97003 * 119.99923 * 334.99384 * 8 5 3 40 40 H 1.08996 * 109.46819 * 300.00082 * 11 9 8 41 41 H 1.09005 * 109.46745 * 59.99799 * 11 9 8 42 42 H 1.08003 * 119.96356 * 359.97438 * 13 12 11 43 43 H 1.07999 * 120.03395 * 180.27187 * 14 13 12 44 44 H 0.96992 * 119.99763 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03599 * 179.97438 * 25 15 14 46 46 H 1.08000 * 119.96484 * 180.02562 * 26 25 15 47 47 H 1.08999 * 115.55257 * 151.23282 * 27 3 2 48 48 H 1.09003 * 117.49883 * 0.02562 * 28 27 3 49 49 H 1.08998 * 117.49770 * 145.02084 * 28 27 3 50 50 H 1.08998 * 117.50380 * 214.98418 * 29 27 3 51 51 H 1.09002 * 117.49827 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4240 2.1248 -1.1515 5 6 3.5255 1.1891 -0.1766 6 1 3.9786 2.1764 -0.0870 7 6 4.0954 0.2667 0.9030 8 7 3.8218 0.6340 -1.4995 9 6 5.0068 0.8907 -2.0881 10 8 5.8276 1.5817 -1.5227 11 6 5.3117 0.3192 -3.4488 12 6 6.6895 0.7528 -3.8784 13 6 6.8522 1.9246 -4.5948 14 6 8.1142 2.3275 -4.9851 15 6 9.2192 1.5487 -4.6676 16 8 10.4603 1.9388 -5.0554 17 6 11.4740 1.0828 -4.8154 18 1 11.2690 0.1035 -4.4087 19 6 12.7796 1.4596 -5.0906 20 7 13.0294 2.6523 -5.5864 21 14 14.1840 0.2738 -4.7575 22 1 13.6416 -0.9927 -4.2035 23 1 14.9049 -0.0082 -6.0248 24 1 15.1221 0.8801 -3.7788 25 6 9.0521 0.3697 -3.9530 26 6 7.7882 -0.0245 -3.5599 27 6 1.7034 2.0003 1.3282 28 6 0.9938 1.1799 2.4073 29 6 0.2353 2.2779 1.6576 30 1 -0.3633 0.3185 0.9772 31 1 -0.3635 0.6869 -0.7643 32 1 -0.3634 -1.0054 -0.2125 33 1 0.3444 2.2077 -1.0257 34 1 1.8677 3.1204 -1.1517 35 1 1.6426 1.6299 -2.0977 36 1 3.7999 0.6323 1.8864 37 1 3.7092 -0.7424 0.7594 38 1 5.1830 0.2530 0.8321 39 1 3.1651 0.0816 -1.9519 40 1 5.2706 -0.7690 -3.4033 41 1 4.5766 0.6809 -4.1678 42 1 5.9918 2.5272 -4.8458 43 1 8.2410 3.2449 -5.5407 44 1 13.9427 2.9161 -5.7786 45 1 9.9095 -0.2383 -3.7050 46 1 7.6576 -0.9410 -3.0038 47 1 2.4401 2.7334 1.6565 48 1 0.7459 0.1450 2.1711 49 1 1.2635 1.3735 3.4454 50 1 0.0062 3.1935 2.2029 51 1 -0.5119 1.9660 0.9279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839833352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:31 Heat of formation + Delta-G solvation = -44.457034 kcal Electronic energy + Delta-G solvation = -30445.922498 eV Core-core repulsion = 26312.855165 eV Total energy + Delta-G solvation = -4133.067333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.94032 -39.54658 -38.68159 -36.53445 -35.88411 -35.29775 -32.47875 -31.97430 -30.94461 -30.09593 -29.99661 -27.54542 -26.55311 -25.07277 -24.16477 -22.73673 -22.70984 -21.88824 -20.77724 -20.50420 -19.89272 -17.91327 -17.49765 -17.04281 -16.79321 -16.43308 -15.88989 -15.27819 -15.17720 -14.78130 -14.51909 -14.29862 -14.21248 -13.80576 -13.71016 -13.52813 -13.40285 -13.37642 -13.14601 -12.73895 -12.63411 -12.58603 -12.27264 -12.22804 -12.00050 -11.83226 -11.74677 -11.44306 -11.26826 -11.21707 -11.05564 -10.82033 -10.73908 -10.66878 -10.51740 -10.39403 -10.36330 -9.90002 -9.58740 -9.27666 -9.03336 -8.76263 -8.06889 -7.08517 -6.39012 -3.97198 2.32697 2.34544 2.86128 3.14054 3.15960 3.17799 3.22889 3.23522 3.55077 4.02062 4.13944 4.24341 4.42409 4.56036 4.63595 4.69232 4.84512 4.93290 4.95505 5.04985 5.14368 5.17024 5.20516 5.23010 5.27168 5.32329 5.33392 5.40227 5.41570 5.43589 5.56664 5.62508 5.67740 5.74650 5.76047 5.77861 5.81702 5.90550 5.93496 6.20610 6.29863 6.49353 6.50213 6.77903 6.78530 6.99592 7.13306 7.31479 7.45189 7.51777 7.59457 7.92260 8.06636 8.43381 9.06995 9.78526 10.79411 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.001841 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.450560 B =15205.018611 C =15476.098734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.368 6.368 3 C 0.139 3.861 4 C -0.177 4.177 5 C 0.165 3.835 6 H 0.097 0.903 7 C -0.158 4.158 8 N -0.731 5.731 9 C 0.510 3.490 10 O -0.521 6.521 11 C -0.080 4.080 12 C -0.168 4.168 13 C -0.060 4.060 14 C -0.192 4.192 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.389 4.389 18 H 0.092 0.908 19 C 0.037 3.963 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.232 4.232 26 C -0.057 4.057 27 C -0.173 4.173 28 C -0.174 4.174 29 C -0.190 4.190 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.400 0.600 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.269 0.731 45 H 0.126 0.874 46 H 0.103 0.897 47 H 0.114 0.886 48 H 0.109 0.891 49 H 0.094 0.906 50 H 0.094 0.906 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.574 -5.108 11.927 31.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.287 6.287 3 C 0.099 3.901 4 C -0.235 4.235 5 C 0.060 3.940 6 H 0.115 0.885 7 C -0.216 4.216 8 N -0.385 5.385 9 C 0.297 3.703 10 O -0.395 6.395 11 C -0.120 4.120 12 C -0.169 4.169 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.102 3.898 16 O -0.083 6.083 17 C -0.465 4.465 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.251 4.251 26 C -0.075 4.075 27 C -0.192 4.192 28 C -0.210 4.210 29 C -0.226 4.226 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.235 0.765 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.078 0.922 45 H 0.144 0.856 46 H 0.121 0.879 47 H 0.132 0.868 48 H 0.127 0.873 49 H 0.112 0.888 50 H 0.113 0.887 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -27.538 -4.423 12.145 30.420 hybrid contribution 0.158 -0.595 0.136 0.631 sum -27.379 -5.019 12.281 30.424 Atomic orbital electron populations 1.23409 0.81925 1.02787 1.01652 1.87985 1.19288 1.26700 1.94753 1.21219 0.93075 0.83119 0.92679 1.22404 1.01379 1.01250 0.98436 1.20808 0.90700 0.99003 0.83512 0.88515 1.22071 1.01407 1.00243 0.97877 1.46106 1.18564 1.54532 1.19305 1.21035 0.80939 0.80483 0.87883 1.90739 1.46303 1.37302 1.65201 1.20404 0.96892 1.01445 0.93253 1.18635 0.92665 0.98580 1.07005 1.20389 0.95699 0.94858 0.96892 1.20140 0.90675 1.01950 1.08346 1.19387 0.86740 0.92222 0.91413 1.83990 1.11575 1.43175 1.69552 1.21367 0.84285 0.96276 1.44617 0.89079 1.25287 0.97603 0.97133 0.96623 1.70051 1.20839 1.18521 1.40494 0.85652 0.80112 0.79364 0.78320 1.19116 1.20193 1.20190 1.21107 0.97523 0.99920 1.06546 1.20513 0.92001 0.97936 0.97061 1.22882 0.96137 1.03534 0.96662 1.23199 1.03457 0.97573 0.96820 1.23344 0.94446 1.00812 1.04024 0.91887 0.93205 0.90003 0.91727 0.90963 0.91324 0.91819 0.91766 0.92103 0.76538 0.89063 0.89125 0.87447 0.86604 0.92153 0.85624 0.87853 0.86832 0.87269 0.88785 0.88711 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 8.61 101.05 0.87 0.86 16 2 O -0.37 -2.80 8.50 -35.23 -0.30 -3.10 16 3 C 0.14 1.05 0.47 -90.62 -0.04 1.01 16 4 C -0.18 -1.21 7.65 37.15 0.28 -0.93 16 5 C 0.16 1.65 1.92 -67.93 -0.13 1.52 16 6 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 7 C -0.16 -1.64 9.10 37.16 0.34 -1.30 16 8 N -0.73 -7.53 4.31 -53.81 -0.23 -7.77 16 9 C 0.51 7.14 7.79 -10.98 -0.09 7.05 16 10 O -0.52 -9.85 15.70 5.56 0.09 -9.76 16 11 C -0.08 -1.03 5.83 -29.04 -0.17 -1.20 16 12 C -0.17 -2.99 4.38 -104.58 -0.46 -3.45 16 13 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 14 C -0.19 -4.29 9.99 -39.40 -0.39 -4.68 16 15 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 16 O -0.18 -5.31 9.76 0.02 0.00 -5.31 16 17 C -0.39 -11.22 9.45 30.89 0.29 -10.93 16 18 H 0.09 2.44 5.28 -52.48 -0.28 2.17 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.97 13.67 55.48 0.76 -25.21 16 21 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.23 -5.33 9.14 -39.40 -0.36 -5.69 16 26 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 27 C -0.17 -1.20 4.11 -90.62 -0.37 -1.57 16 28 C -0.17 -1.06 9.28 -26.70 -0.25 -1.31 16 29 C -0.19 -1.04 8.88 -26.70 -0.24 -1.28 16 30 H 0.06 0.30 3.69 -51.93 -0.19 0.11 16 31 H 0.05 0.23 5.52 -51.93 -0.29 -0.06 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.36 5.26 -51.93 -0.27 0.09 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.47 7.13 -51.93 -0.37 0.10 16 36 H 0.06 0.58 7.23 -51.93 -0.38 0.21 16 37 H 0.06 0.66 7.73 -51.93 -0.40 0.26 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 3.24 7.86 -40.82 -0.32 2.92 16 40 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.13 2.89 5.70 -52.49 -0.30 2.59 16 46 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 47 H 0.11 0.82 8.09 -51.93 -0.42 0.40 16 48 H 0.11 0.69 5.50 -51.93 -0.29 0.41 16 49 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.10 0.48 4.93 -51.93 -0.26 0.22 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -34.43 401.78 -8.00 -42.43 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.51 Total: 6.85 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.84 Total: -20.26 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.53 Total: -32.97 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.21 Total: -18.17 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.43 -8.00 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839833352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.031 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds