Wall clock time and date at job start Wed Apr 1 2020 04:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99859 * 2 1 4 4 C 1.52994 * 109.47552 * 307.03313 * 3 2 1 5 5 C 1.52999 * 109.46960 * 187.03095 * 3 2 1 6 6 H 1.09001 * 109.47028 * 185.04611 * 5 3 2 7 7 C 1.53002 * 109.47130 * 305.04054 * 5 3 2 8 8 N 1.46497 * 109.47306 * 65.04663 * 5 3 2 9 9 C 1.34781 * 120.00182 * 155.00063 * 8 5 3 10 10 O 1.21278 * 119.99790 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99882 * 179.97438 * 9 8 5 12 12 C 1.50693 * 109.46848 * 179.97438 * 11 9 8 13 13 C 1.38300 * 119.93619 * 269.72966 * 12 11 9 14 14 C 1.38099 * 120.07236 * 179.72833 * 13 12 11 15 15 C 1.38872 * 119.92778 * 0.56660 * 14 13 12 16 16 O 1.35755 * 120.06595 * 179.68441 * 15 14 13 17 17 C 1.34834 * 117.00056 * 185.50551 * 16 15 14 18 18 H 1.08005 * 119.99915 * 4.98626 * 17 16 15 19 19 C 1.38652 * 120.00360 * 184.98926 * 17 16 15 20 20 N 1.31557 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00103 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47196 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46926 * 119.99927 * 21 19 17 24 24 H 1.48499 * 109.46947 * 239.99426 * 21 19 17 25 25 C 1.38875 * 119.86645 * 359.70537 * 15 14 13 26 26 C 1.38100 * 119.92856 * 359.97438 * 25 15 14 27 27 C 1.53003 * 109.46823 * 67.03443 * 3 2 1 28 28 C 1.53002 * 117.49926 * 5.55543 * 27 3 2 29 29 C 1.52996 * 117.49802 * 296.89866 * 27 3 2 30 30 H 1.09007 * 109.46734 * 288.05294 * 1 2 3 31 31 H 1.08998 * 109.47962 * 48.05403 * 1 2 3 32 32 H 1.08995 * 109.47344 * 168.06442 * 1 2 3 33 33 H 1.09004 * 109.47135 * 59.99571 * 4 3 2 34 34 H 1.09000 * 109.47101 * 180.02562 * 4 3 2 35 35 H 1.09006 * 109.47132 * 299.99561 * 4 3 2 36 36 H 1.08997 * 109.47698 * 304.95255 * 7 5 3 37 37 H 1.08998 * 109.46872 * 64.95277 * 7 5 3 38 38 H 1.09004 * 109.47232 * 184.94881 * 7 5 3 39 39 H 0.97003 * 119.99923 * 334.99384 * 8 5 3 40 40 H 1.08996 * 109.46819 * 300.00082 * 11 9 8 41 41 H 1.09005 * 109.46745 * 59.99799 * 11 9 8 42 42 H 1.08003 * 119.96356 * 359.97438 * 13 12 11 43 43 H 1.07999 * 120.03395 * 180.27187 * 14 13 12 44 44 H 0.96992 * 119.99763 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03599 * 179.97438 * 25 15 14 46 46 H 1.08000 * 119.96484 * 180.02562 * 26 25 15 47 47 H 1.08999 * 115.55257 * 151.23282 * 27 3 2 48 48 H 1.09003 * 117.49883 * 0.02562 * 28 27 3 49 49 H 1.08998 * 117.49770 * 145.02084 * 28 27 3 50 50 H 1.08998 * 117.50380 * 214.98418 * 29 27 3 51 51 H 1.09002 * 117.49827 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4240 2.1248 -1.1515 5 6 3.5255 1.1891 -0.1766 6 1 3.9786 2.1764 -0.0870 7 6 4.0954 0.2667 0.9030 8 7 3.8218 0.6340 -1.4995 9 6 5.0068 0.8907 -2.0881 10 8 5.8276 1.5817 -1.5227 11 6 5.3117 0.3192 -3.4488 12 6 6.6895 0.7528 -3.8784 13 6 6.8522 1.9246 -4.5948 14 6 8.1142 2.3275 -4.9851 15 6 9.2192 1.5487 -4.6676 16 8 10.4603 1.9388 -5.0554 17 6 11.4740 1.0828 -4.8154 18 1 11.2690 0.1035 -4.4087 19 6 12.7796 1.4596 -5.0906 20 7 13.0294 2.6523 -5.5864 21 14 14.1840 0.2738 -4.7575 22 1 13.6416 -0.9927 -4.2035 23 1 14.9049 -0.0082 -6.0248 24 1 15.1221 0.8801 -3.7788 25 6 9.0521 0.3697 -3.9530 26 6 7.7882 -0.0245 -3.5599 27 6 1.7034 2.0003 1.3282 28 6 0.9938 1.1799 2.4073 29 6 0.2353 2.2779 1.6576 30 1 -0.3633 0.3185 0.9772 31 1 -0.3635 0.6869 -0.7643 32 1 -0.3634 -1.0054 -0.2125 33 1 0.3444 2.2077 -1.0257 34 1 1.8677 3.1204 -1.1517 35 1 1.6426 1.6299 -2.0977 36 1 3.7999 0.6323 1.8864 37 1 3.7092 -0.7424 0.7594 38 1 5.1830 0.2530 0.8321 39 1 3.1651 0.0816 -1.9519 40 1 5.2706 -0.7690 -3.4033 41 1 4.5766 0.6809 -4.1678 42 1 5.9918 2.5272 -4.8458 43 1 8.2410 3.2449 -5.5407 44 1 13.9427 2.9161 -5.7786 45 1 9.9095 -0.2383 -3.7050 46 1 7.6576 -0.9410 -3.0038 47 1 2.4401 2.7334 1.6565 48 1 0.7459 0.1450 2.1711 49 1 1.2635 1.3735 3.4454 50 1 0.0062 3.1935 2.2029 51 1 -0.5119 1.9660 0.9279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839833352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:30 Heat of formation + Delta-G solvation = -66.700318 kcal Electronic energy + Delta-G solvation = -30446.887039 eV Core-core repulsion = 26312.855165 eV Total energy + Delta-G solvation = -4134.031874 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61936 -40.88882 -40.16854 -38.23024 -36.52789 -36.12250 -34.39599 -33.23927 -32.05890 -31.75344 -30.81241 -28.21964 -27.93857 -26.96536 -24.76772 -23.66933 -23.60862 -23.15506 -22.17941 -21.28142 -20.86106 -19.83962 -18.86970 -18.28021 -17.65271 -17.23661 -16.62774 -16.48313 -16.37386 -16.07807 -15.81919 -15.73127 -15.47944 -15.21830 -14.94359 -14.69309 -14.42997 -14.34168 -14.23185 -14.07410 -13.82019 -13.59402 -13.33245 -13.11623 -12.97123 -12.80690 -12.75151 -12.63455 -12.47641 -12.29352 -12.26155 -12.21702 -12.09723 -11.99570 -11.55831 -11.27251 -11.19155 -10.93916 -10.85950 -10.70057 -10.36968 -9.99461 -9.74964 -8.88591 -8.47436 -6.15239 0.62716 0.68822 1.33679 1.42482 1.52639 1.78284 2.17524 2.25642 2.64033 2.85244 3.03193 3.19761 3.51496 3.52351 3.71159 3.89125 3.89816 4.05664 4.07343 4.16334 4.18501 4.23241 4.36329 4.44437 4.46225 4.51330 4.55957 4.59845 4.61522 4.72902 4.73282 4.76374 4.82507 4.83292 4.88299 4.94443 4.99565 5.10571 5.13596 5.15170 5.20232 5.26589 5.26827 5.31865 5.35311 5.57587 5.59336 5.72928 5.79809 6.03229 6.24504 6.27476 6.69053 6.97290 7.41749 7.79120 8.76446 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.001841 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.450560 B =15205.018611 C =15476.098734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.380 6.380 3 C 0.150 3.850 4 C -0.177 4.177 5 C 0.162 3.838 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.710 5.710 9 C 0.512 3.488 10 O -0.579 6.579 11 C -0.078 4.078 12 C -0.143 4.143 13 C -0.057 4.057 14 C -0.206 4.206 15 C 0.111 3.889 16 O -0.234 6.234 17 C -0.412 4.412 18 H 0.100 0.900 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.244 4.244 26 C -0.061 4.061 27 C -0.189 4.189 28 C -0.174 4.174 29 C -0.177 4.177 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.416 0.584 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.148 0.852 43 H 0.112 0.888 44 H 0.273 0.727 45 H 0.116 0.884 46 H 0.136 0.864 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.095 0.905 50 H 0.100 0.900 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.471 -7.293 12.763 35.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.300 6.300 3 C 0.110 3.890 4 C -0.234 4.234 5 C 0.057 3.943 6 H 0.094 0.906 7 C -0.208 4.208 8 N -0.363 5.363 9 C 0.300 3.700 10 O -0.458 6.458 11 C -0.118 4.118 12 C -0.144 4.144 13 C -0.075 4.075 14 C -0.225 4.225 15 C 0.061 3.939 16 O -0.141 6.141 17 C -0.488 4.488 18 H 0.117 0.883 19 C -0.223 4.223 20 N -0.560 5.560 21 Si 0.840 3.160 22 H -0.175 1.175 23 H -0.190 1.190 24 H -0.194 1.194 25 C -0.263 4.263 26 C -0.080 4.080 27 C -0.208 4.208 28 C -0.211 4.211 29 C -0.213 4.213 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.253 0.747 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.165 0.835 43 H 0.131 0.869 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.154 0.846 47 H 0.123 0.877 48 H 0.128 0.872 49 H 0.114 0.886 50 H 0.118 0.882 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -31.548 -6.649 12.989 34.759 hybrid contribution 0.940 0.050 -0.012 0.941 sum -30.608 -6.599 12.976 33.894 Atomic orbital electron populations 1.23566 0.80541 1.03799 1.02344 1.87955 1.20753 1.26361 1.94885 1.20983 0.91132 0.83542 0.93380 1.22408 1.02325 1.00589 0.98106 1.20810 0.92690 0.97730 0.83041 0.90617 1.21982 0.99508 1.00607 0.98710 1.45901 1.17657 1.53588 1.19178 1.21144 0.81147 0.79695 0.88032 1.90748 1.48248 1.40124 1.66672 1.20528 0.94277 1.03624 0.93323 1.19248 0.94966 0.96798 1.03393 1.20874 0.95331 0.95495 0.95806 1.20438 0.91540 1.01853 1.08693 1.19942 0.86334 0.94140 0.93470 1.83946 1.13100 1.44626 1.72419 1.21846 0.84989 0.96935 1.45063 0.88315 1.26627 1.00315 0.99267 0.96082 1.70195 1.21702 1.21102 1.43016 0.84510 0.75845 0.77068 0.78624 1.17547 1.19021 1.19401 1.21217 0.99033 0.99255 1.06800 1.20926 0.90995 0.99387 0.96642 1.22857 0.97124 1.04007 0.96785 1.23229 1.03392 0.97727 0.96754 1.23416 0.93490 1.00729 1.03715 0.91355 0.92246 0.88990 0.90137 0.91815 0.91029 0.90893 0.91357 0.94833 0.74708 0.85665 0.85110 0.83472 0.86944 0.91848 0.86634 0.84631 0.87721 0.87243 0.88615 0.88186 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 8.61 113.37 0.98 0.92 16 2 O -0.38 -4.59 8.50 -148.98 -1.27 -5.85 16 3 C 0.15 1.91 0.47 -10.79 -0.01 1.90 16 4 C -0.18 -1.90 7.65 71.98 0.55 -1.35 16 5 C 0.16 3.00 1.92 44.99 0.09 3.09 16 6 H 0.08 1.77 7.58 -2.39 -0.02 1.75 16 7 C -0.15 -2.97 9.10 71.98 0.65 -2.31 16 8 N -0.71 -12.48 4.31 -442.53 -1.91 -14.39 16 9 C 0.51 12.81 7.79 87.66 0.68 13.49 16 10 O -0.58 -21.25 15.70 -3.02 -0.05 -21.30 16 11 C -0.08 -1.63 5.83 29.10 0.17 -1.46 16 12 C -0.14 -4.69 4.38 -19.84 -0.09 -4.78 16 13 C -0.06 -2.05 9.69 22.25 0.22 -1.84 16 14 C -0.21 -9.44 9.99 22.39 0.22 -9.22 16 15 C 0.11 5.94 6.65 22.57 0.15 6.09 16 16 O -0.23 -14.87 9.76 -22.84 -0.22 -15.09 16 17 C -0.41 -25.18 9.45 67.92 0.64 -24.54 16 18 H 0.10 5.59 5.28 -2.91 -0.02 5.57 16 19 C -0.03 -1.53 5.49 84.83 0.47 -1.06 16 20 N -0.92 -58.56 13.67 21.61 0.30 -58.27 16 21 Si 1.02 44.64 29.55 68.60 2.03 46.66 16 22 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 C -0.24 -11.52 9.14 22.39 0.20 -11.32 16 26 C -0.06 -2.31 9.69 22.25 0.22 -2.09 16 27 C -0.19 -2.27 4.11 -10.79 -0.04 -2.31 16 28 C -0.17 -1.76 9.28 30.62 0.28 -1.48 16 29 C -0.18 -1.47 8.88 30.62 0.27 -1.20 16 30 H 0.07 0.41 3.69 -2.38 -0.01 0.41 16 31 H 0.06 0.31 5.52 -2.39 -0.01 0.29 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.61 5.26 -2.38 -0.01 0.60 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.72 7.13 -2.38 -0.02 0.70 16 36 H 0.07 1.28 7.23 -2.39 -0.02 1.26 16 37 H 0.07 1.28 7.73 -2.39 -0.02 1.26 16 38 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.42 4.94 7.86 -92.71 -0.73 4.21 16 40 H 0.13 1.91 8.08 -2.39 -0.02 1.89 16 41 H 0.13 1.82 8.08 -2.38 -0.02 1.80 16 42 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 44 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 45 H 0.12 5.56 5.70 -2.91 -0.02 5.54 16 46 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 47 H 0.10 1.43 8.09 -2.39 -0.02 1.41 16 48 H 0.11 1.12 5.50 -2.39 -0.01 1.10 16 49 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.11 0.67 4.93 -2.39 -0.01 0.66 16 Total: -1.00 -82.45 401.78 4.77 -77.68 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.23 Total: 30.02 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 5.66 Total: -39.46 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.61 Total: -72.66 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.54 Total: -42.24 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -82.45 4.77 -77.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839833352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.975 kcal (2) G-P(sol) polarization free energy of solvation -82.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds