Wall clock time and date at job start Wed Apr 1 2020 04:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99685 * 2 1 4 4 C 1.53000 * 109.46881 * 307.73488 * 3 2 1 5 5 C 1.52999 * 109.47334 * 187.73428 * 3 2 1 6 6 H 1.08996 * 109.47212 * 184.99971 * 5 3 2 7 7 C 1.53000 * 109.46986 * 305.00245 * 5 3 2 8 8 N 1.46508 * 109.46956 * 64.99914 * 5 3 2 9 9 C 1.34771 * 119.99859 * 154.99791 * 8 5 3 10 10 O 1.21278 * 120.00230 * 0.02562 * 9 8 5 11 11 C 1.50700 * 119.99840 * 179.97438 * 9 8 5 12 12 C 1.50708 * 109.47268 * 180.02562 * 11 9 8 13 13 C 1.38315 * 119.96365 * 269.73075 * 12 11 9 14 14 C 1.38291 * 120.13440 * 179.76595 * 13 12 11 15 15 C 1.38122 * 120.06591 * 0.50670 * 14 13 12 16 16 C 1.38855 * 119.93030 * 359.74715 * 15 14 13 17 17 O 1.35756 * 120.06520 * 179.97438 * 16 15 14 18 18 C 1.34827 * 116.99871 * 354.75009 * 17 16 15 19 19 H 1.08001 * 120.00349 * 5.03025 * 18 17 16 20 20 C 1.38661 * 119.99571 * 185.02931 * 18 17 16 21 21 N 1.31558 * 119.99606 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00205 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47114 * 89.99918 * 22 20 18 24 24 H 1.48501 * 109.47367 * 210.00189 * 22 20 18 25 25 H 1.48500 * 109.47181 * 330.00346 * 22 20 18 26 26 C 1.38078 * 119.96289 * 90.00182 * 12 11 9 27 27 C 1.53004 * 109.47083 * 67.73538 * 3 2 1 28 28 C 1.53002 * 117.49750 * 1.79315 * 27 3 2 29 29 C 1.52995 * 117.49794 * 293.16969 * 27 3 2 30 30 H 1.08998 * 109.47244 * 303.02042 * 1 2 3 31 31 H 1.09000 * 109.47233 * 63.02656 * 1 2 3 32 32 H 1.09002 * 109.46249 * 183.02514 * 1 2 3 33 33 H 1.09006 * 109.46749 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47110 * 60.00583 * 4 3 2 35 35 H 1.09001 * 109.47394 * 299.99835 * 4 3 2 36 36 H 1.09004 * 109.46718 * 179.97438 * 7 5 3 37 37 H 1.08993 * 109.47025 * 299.99817 * 7 5 3 38 38 H 1.08996 * 109.47368 * 59.99822 * 7 5 3 39 39 H 0.97003 * 120.00108 * 335.00196 * 8 5 3 40 40 H 1.08996 * 109.47538 * 300.00198 * 11 9 8 41 41 H 1.09003 * 109.46949 * 60.00389 * 11 9 8 42 42 H 1.07992 * 119.93639 * 359.97438 * 13 12 11 43 43 H 1.07998 * 119.96355 * 180.25672 * 14 13 12 44 44 H 1.08001 * 120.03081 * 179.72516 * 15 14 13 45 45 H 0.97006 * 119.99892 * 179.97438 * 21 20 18 46 46 H 1.08007 * 120.03404 * 359.96004 * 26 12 11 47 47 H 1.08993 * 115.54660 * 147.49928 * 27 3 2 48 48 H 1.09003 * 117.49912 * 359.97438 * 28 27 3 49 49 H 1.08999 * 117.49720 * 145.02473 * 28 27 3 50 50 H 1.08998 * 117.50383 * 214.97889 * 29 27 3 51 51 H 1.09006 * 117.50072 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4110 2.1305 -1.1408 5 6 3.5234 1.1902 -0.1941 6 1 3.9774 2.1772 -0.1056 7 6 4.1055 0.2633 0.8749 8 7 3.8048 0.6407 -1.5228 9 6 4.9829 0.9002 -2.1236 10 8 5.8104 1.5882 -1.5643 11 6 5.2726 0.3344 -3.4900 12 6 6.6460 0.7692 -3.9329 13 6 6.8022 1.9440 -4.6461 14 6 8.0613 2.3487 -5.0501 15 6 9.1659 1.5750 -4.7514 16 6 9.0116 0.3924 -4.0402 17 8 10.0952 -0.3703 -3.7456 18 6 11.2771 0.0188 -4.2647 19 1 11.3461 0.9451 -4.8159 20 6 12.4040 -0.7702 -4.0910 21 7 13.5574 -0.3902 -4.5972 22 14 12.2849 -2.3718 -3.1372 23 1 11.9572 -3.4801 -4.0697 24 1 13.5839 -2.6507 -2.4738 25 1 11.2188 -2.2580 -2.1097 26 6 7.7462 -0.0086 -3.6312 27 6 1.7183 1.9937 1.3350 28 6 0.9428 1.1968 2.3859 29 6 0.2623 2.3486 1.6433 30 1 -0.3633 0.5600 0.8616 31 1 -0.3634 0.4661 -0.9159 32 1 -0.3632 -1.0263 0.0542 33 1 1.8540 3.1264 -1.1405 34 1 0.3330 2.2127 -1.0024 35 1 1.6190 1.6402 -2.0919 36 1 5.1836 0.1808 0.7363 37 1 3.8962 0.6721 1.8633 38 1 3.6516 -0.7237 0.7863 39 1 3.1432 0.0901 -1.9700 40 1 5.2322 -0.7540 -3.4487 41 1 4.5294 0.6990 -4.1992 42 1 5.9396 2.5481 -4.8850 43 1 8.1806 3.2686 -5.6032 44 1 10.1484 1.8894 -5.0710 45 1 14.3459 -0.9419 -4.4754 46 1 7.6231 -0.9278 -3.0776 47 1 2.4890 2.6781 1.6894 48 1 0.6402 0.1824 2.1261 49 1 1.2033 1.3567 3.4321 50 1 0.0751 3.2661 2.2011 51 1 -0.4876 2.0921 0.8950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839837656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:47 Heat of formation + Delta-G solvation = -40.401448 kcal Electronic energy + Delta-G solvation = -30672.978180 eV Core-core repulsion = 26540.086711 eV Total energy + Delta-G solvation = -4132.891469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97957 -39.65540 -38.82292 -36.67151 -35.93519 -35.34646 -32.49447 -32.26182 -31.40115 -30.12753 -29.33880 -27.55058 -26.97638 -25.10676 -24.21610 -22.88763 -22.72205 -21.68375 -20.84352 -20.53348 -19.98480 -17.74394 -17.55212 -17.13059 -16.80002 -16.45688 -15.89740 -15.39077 -15.17937 -15.06062 -14.70036 -14.56428 -13.93035 -13.85845 -13.76644 -13.54244 -13.48783 -13.44540 -13.18849 -12.73641 -12.65118 -12.45468 -12.29959 -12.28161 -12.09489 -11.96817 -11.82377 -11.59476 -11.27617 -11.24266 -11.09862 -10.79948 -10.75164 -10.73081 -10.65364 -10.41616 -10.10095 -9.89721 -9.67666 -9.32205 -9.07828 -8.80821 -8.06961 -7.28462 -6.34838 -4.01218 2.08700 2.36112 2.79127 3.13108 3.15537 3.27277 3.29987 3.46366 3.53688 4.11545 4.22696 4.29986 4.40289 4.52258 4.56684 4.66700 4.80228 4.85626 4.89512 4.95839 5.00792 5.12581 5.13981 5.17145 5.22855 5.25476 5.29583 5.33281 5.39973 5.42577 5.54722 5.60038 5.62932 5.66909 5.73358 5.75562 5.76815 5.89117 5.91742 6.19186 6.21970 6.32671 6.45286 6.60331 6.77392 6.86423 7.17488 7.28693 7.38820 7.51899 7.68588 7.87928 8.11361 8.35768 9.00901 9.64606 10.73041 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.002125 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.387734 B =13171.537313 C =13950.048018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.368 6.368 3 C 0.139 3.861 4 C -0.176 4.176 5 C 0.165 3.835 6 H 0.097 0.903 7 C -0.159 4.159 8 N -0.729 5.729 9 C 0.514 3.486 10 O -0.520 6.520 11 C -0.094 4.094 12 C -0.033 4.033 13 C -0.188 4.188 14 C -0.076 4.076 15 C -0.218 4.218 16 C 0.160 3.840 17 O -0.220 6.220 18 C -0.387 4.387 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.174 4.174 27 C -0.173 4.173 28 C -0.174 4.174 29 C -0.189 4.189 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.401 0.599 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.278 0.722 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.109 0.891 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.824 2.806 9.288 32.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.287 6.287 3 C 0.099 3.901 4 C -0.233 4.233 5 C 0.060 3.940 6 H 0.115 0.885 7 C -0.217 4.217 8 N -0.383 5.383 9 C 0.301 3.699 10 O -0.394 6.394 11 C -0.134 4.134 12 C -0.034 4.034 13 C -0.207 4.207 14 C -0.095 4.095 15 C -0.237 4.237 16 C 0.109 3.891 17 O -0.125 6.125 18 C -0.463 4.463 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.194 4.194 27 C -0.192 4.192 28 C -0.211 4.211 29 C -0.226 4.226 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.236 0.764 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.150 0.850 45 H 0.088 0.912 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.127 0.873 49 H 0.113 0.887 50 H 0.114 0.886 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -29.811 2.891 9.804 31.515 hybrid contribution -0.339 -0.541 0.127 0.651 sum -30.150 2.350 9.931 31.831 Atomic orbital electron populations 1.23448 0.81917 1.03258 1.01509 1.87992 1.19323 1.26639 1.94749 1.21208 0.93053 0.83187 0.92668 1.22408 1.01300 1.01135 0.98505 1.20828 0.90857 0.99043 0.83239 0.88472 1.22076 1.01517 1.00276 0.97840 1.46049 1.18742 1.54657 1.18861 1.20731 0.81133 0.80467 0.87591 1.90756 1.45505 1.37398 1.65763 1.20591 0.96681 1.02300 0.93842 1.18654 0.92076 0.94988 0.97672 1.20409 0.96806 0.97851 1.05645 1.20732 0.92313 0.98189 0.98228 1.21287 0.99831 0.96873 1.05726 1.19011 0.87225 0.90225 0.92679 1.83571 1.14909 1.48787 1.65239 1.20764 0.82475 1.08734 1.34326 0.87672 1.24456 0.93753 0.99021 0.96840 1.69652 0.99530 1.38988 1.43872 0.86190 0.77859 0.82243 0.80671 1.19943 1.20845 1.18350 1.19944 0.89886 1.02097 1.07436 1.22882 0.95659 1.03793 0.96821 1.23217 1.03413 0.97311 0.97159 1.23331 0.95137 1.00171 1.03962 0.91238 0.93797 0.89805 0.91032 0.91843 0.91370 0.91975 0.91853 0.91617 0.76437 0.88288 0.88426 0.87788 0.87230 0.85027 0.91161 0.86855 0.86790 0.87250 0.88719 0.88629 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 8.50 101.05 0.86 0.83 16 2 O -0.37 -2.81 8.48 -35.23 -0.30 -3.11 16 3 C 0.14 1.04 0.47 -90.62 -0.04 0.99 16 4 C -0.18 -1.16 7.53 37.16 0.28 -0.88 16 5 C 0.17 1.65 1.90 -67.93 -0.13 1.52 16 6 H 0.10 1.12 7.58 -51.93 -0.39 0.73 16 7 C -0.16 -1.69 9.11 37.16 0.34 -1.35 16 8 N -0.73 -7.46 4.31 -53.80 -0.23 -7.70 16 9 C 0.51 7.15 7.79 -10.99 -0.09 7.07 16 10 O -0.52 -9.74 15.70 5.56 0.09 -9.66 16 11 C -0.09 -1.20 5.83 -29.03 -0.17 -1.37 16 12 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 13 C -0.19 -3.34 9.70 -39.53 -0.38 -3.72 16 14 C -0.08 -1.47 10.04 -39.60 -0.40 -1.87 16 15 C -0.22 -4.97 9.17 -39.40 -0.36 -5.33 16 16 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 17 O -0.22 -6.05 8.59 0.04 0.00 -6.05 16 18 C -0.39 -11.28 9.95 30.89 0.31 -10.97 16 19 H 0.11 3.12 5.43 -52.49 -0.29 2.84 16 20 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 21 N -0.88 -26.08 13.96 55.48 0.77 -25.31 16 22 Si 0.90 22.34 28.62 -169.99 -4.86 17.48 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.26 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.17 -3.67 9.64 -39.40 -0.38 -4.05 16 27 C -0.17 -1.17 4.26 -90.62 -0.39 -1.55 16 28 C -0.17 -1.05 9.28 -26.73 -0.25 -1.30 16 29 C -0.19 -1.00 8.87 -26.73 -0.24 -1.24 16 30 H 0.07 0.32 2.98 -51.93 -0.15 0.17 16 31 H 0.04 0.20 6.51 -51.93 -0.34 -0.13 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.34 5.38 -51.93 -0.28 0.06 16 35 H 0.07 0.45 7.13 -51.93 -0.37 0.08 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 38 H 0.06 0.70 7.56 -51.93 -0.39 0.30 16 39 H 0.40 3.21 7.86 -40.82 -0.32 2.89 16 40 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 41 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 42 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.13 3.12 5.64 -52.49 -0.30 2.82 16 45 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.11 2.26 8.06 -52.48 -0.42 1.83 16 47 H 0.11 0.80 8.06 -51.93 -0.42 0.38 16 48 H 0.11 0.68 5.44 -51.93 -0.28 0.40 16 49 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.10 0.46 5.02 -51.93 -0.26 0.20 16 LS Contribution 400.82 15.07 6.04 6.04 Total: -1.00 -33.65 400.82 -7.87 -41.53 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.53 Total: 5.72 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -1.85 Total: -18.94 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.54 Total: -33.00 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.21 Total: -18.82 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.86 Total: 17.48 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.65 -7.87 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839837656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.125 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds