Wall clock time and date at job start Wed Apr 1 2020 04:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99685 * 2 1 4 4 C 1.53000 * 109.46881 * 307.73488 * 3 2 1 5 5 C 1.52999 * 109.47334 * 187.73428 * 3 2 1 6 6 H 1.08996 * 109.47212 * 184.99971 * 5 3 2 7 7 C 1.53000 * 109.46986 * 305.00245 * 5 3 2 8 8 N 1.46508 * 109.46956 * 64.99914 * 5 3 2 9 9 C 1.34771 * 119.99859 * 154.99791 * 8 5 3 10 10 O 1.21278 * 120.00230 * 0.02562 * 9 8 5 11 11 C 1.50700 * 119.99840 * 179.97438 * 9 8 5 12 12 C 1.50708 * 109.47268 * 180.02562 * 11 9 8 13 13 C 1.38315 * 119.96365 * 269.73075 * 12 11 9 14 14 C 1.38291 * 120.13440 * 179.76595 * 13 12 11 15 15 C 1.38122 * 120.06591 * 0.50670 * 14 13 12 16 16 C 1.38855 * 119.93030 * 359.74715 * 15 14 13 17 17 O 1.35756 * 120.06520 * 179.97438 * 16 15 14 18 18 C 1.34827 * 116.99871 * 354.75009 * 17 16 15 19 19 H 1.08001 * 120.00349 * 5.03025 * 18 17 16 20 20 C 1.38661 * 119.99571 * 185.02931 * 18 17 16 21 21 N 1.31558 * 119.99606 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00205 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47114 * 89.99918 * 22 20 18 24 24 H 1.48501 * 109.47367 * 210.00189 * 22 20 18 25 25 H 1.48500 * 109.47181 * 330.00346 * 22 20 18 26 26 C 1.38078 * 119.96289 * 90.00182 * 12 11 9 27 27 C 1.53004 * 109.47083 * 67.73538 * 3 2 1 28 28 C 1.53002 * 117.49750 * 1.79315 * 27 3 2 29 29 C 1.52995 * 117.49794 * 293.16969 * 27 3 2 30 30 H 1.08998 * 109.47244 * 303.02042 * 1 2 3 31 31 H 1.09000 * 109.47233 * 63.02656 * 1 2 3 32 32 H 1.09002 * 109.46249 * 183.02514 * 1 2 3 33 33 H 1.09006 * 109.46749 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47110 * 60.00583 * 4 3 2 35 35 H 1.09001 * 109.47394 * 299.99835 * 4 3 2 36 36 H 1.09004 * 109.46718 * 179.97438 * 7 5 3 37 37 H 1.08993 * 109.47025 * 299.99817 * 7 5 3 38 38 H 1.08996 * 109.47368 * 59.99822 * 7 5 3 39 39 H 0.97003 * 120.00108 * 335.00196 * 8 5 3 40 40 H 1.08996 * 109.47538 * 300.00198 * 11 9 8 41 41 H 1.09003 * 109.46949 * 60.00389 * 11 9 8 42 42 H 1.07992 * 119.93639 * 359.97438 * 13 12 11 43 43 H 1.07998 * 119.96355 * 180.25672 * 14 13 12 44 44 H 1.08001 * 120.03081 * 179.72516 * 15 14 13 45 45 H 0.97006 * 119.99892 * 179.97438 * 21 20 18 46 46 H 1.08007 * 120.03404 * 359.96004 * 26 12 11 47 47 H 1.08993 * 115.54660 * 147.49928 * 27 3 2 48 48 H 1.09003 * 117.49912 * 359.97438 * 28 27 3 49 49 H 1.08999 * 117.49720 * 145.02473 * 28 27 3 50 50 H 1.08998 * 117.50383 * 214.97889 * 29 27 3 51 51 H 1.09006 * 117.50072 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4110 2.1305 -1.1408 5 6 3.5234 1.1902 -0.1941 6 1 3.9774 2.1772 -0.1056 7 6 4.1055 0.2633 0.8749 8 7 3.8048 0.6407 -1.5228 9 6 4.9829 0.9002 -2.1236 10 8 5.8104 1.5882 -1.5643 11 6 5.2726 0.3344 -3.4900 12 6 6.6460 0.7692 -3.9329 13 6 6.8022 1.9440 -4.6461 14 6 8.0613 2.3487 -5.0501 15 6 9.1659 1.5750 -4.7514 16 6 9.0116 0.3924 -4.0402 17 8 10.0952 -0.3703 -3.7456 18 6 11.2771 0.0188 -4.2647 19 1 11.3461 0.9451 -4.8159 20 6 12.4040 -0.7702 -4.0910 21 7 13.5574 -0.3902 -4.5972 22 14 12.2849 -2.3718 -3.1372 23 1 11.9572 -3.4801 -4.0697 24 1 13.5839 -2.6507 -2.4738 25 1 11.2188 -2.2580 -2.1097 26 6 7.7462 -0.0086 -3.6312 27 6 1.7183 1.9937 1.3350 28 6 0.9428 1.1968 2.3859 29 6 0.2623 2.3486 1.6433 30 1 -0.3633 0.5600 0.8616 31 1 -0.3634 0.4661 -0.9159 32 1 -0.3632 -1.0263 0.0542 33 1 1.8540 3.1264 -1.1405 34 1 0.3330 2.2127 -1.0024 35 1 1.6190 1.6402 -2.0919 36 1 5.1836 0.1808 0.7363 37 1 3.8962 0.6721 1.8633 38 1 3.6516 -0.7237 0.7863 39 1 3.1432 0.0901 -1.9700 40 1 5.2322 -0.7540 -3.4487 41 1 4.5294 0.6990 -4.1992 42 1 5.9396 2.5481 -4.8850 43 1 8.1806 3.2686 -5.6032 44 1 10.1484 1.8894 -5.0710 45 1 14.3459 -0.9419 -4.4754 46 1 7.6231 -0.9278 -3.0776 47 1 2.4890 2.6781 1.6894 48 1 0.6402 0.1824 2.1261 49 1 1.2033 1.3567 3.4321 50 1 0.0751 3.2661 2.2011 51 1 -0.4876 2.0921 0.8950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839837656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:46 Heat of formation + Delta-G solvation = -61.676557 kcal Electronic energy + Delta-G solvation = -30673.900738 eV Core-core repulsion = 26540.086711 eV Total energy + Delta-G solvation = -4133.814027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.65562 -40.99727 -40.24317 -38.33139 -36.58203 -36.13721 -34.48177 -33.68252 -32.36774 -31.08602 -30.79492 -28.42777 -27.91748 -27.16190 -24.81691 -23.86499 -23.23062 -23.14639 -22.28894 -21.32218 -20.93273 -19.66267 -18.96784 -18.28516 -17.58442 -17.26844 -16.87081 -16.73194 -16.46064 -16.11359 -15.92674 -15.66144 -15.58661 -15.25122 -14.92879 -14.71458 -14.46575 -14.27860 -14.21675 -14.13389 -13.92482 -13.83605 -13.33693 -13.14534 -13.03472 -12.83354 -12.78522 -12.64180 -12.50924 -12.43826 -12.33657 -12.28725 -11.97325 -11.93313 -11.60844 -11.31119 -11.27265 -10.95170 -10.92000 -10.82167 -10.35525 -10.02824 -9.65691 -9.05786 -8.50488 -6.22974 0.49601 0.70871 1.28941 1.33636 1.50575 1.72721 2.21119 2.27527 2.63474 2.78565 3.03210 3.05946 3.15599 3.50355 3.70820 3.78544 3.89179 4.04528 4.08028 4.14136 4.15191 4.30699 4.33891 4.42258 4.45356 4.48767 4.54024 4.56558 4.61037 4.66098 4.70480 4.71493 4.76660 4.84126 4.86750 4.94369 4.96270 5.00759 5.12969 5.19870 5.25398 5.25851 5.26708 5.34046 5.39653 5.55805 5.65892 5.73358 5.77091 5.91907 6.25642 6.27864 6.63992 6.83844 7.36146 7.59260 8.61306 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.002125 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.387734 B =13171.537313 C =13950.048018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.382 6.382 3 C 0.149 3.851 4 C -0.175 4.175 5 C 0.163 3.837 6 H 0.079 0.921 7 C -0.152 4.152 8 N -0.709 5.709 9 C 0.516 3.484 10 O -0.577 6.577 11 C -0.091 4.091 12 C -0.026 4.026 13 C -0.170 4.170 14 C -0.078 4.078 15 C -0.241 4.241 16 C 0.118 3.882 17 O -0.248 6.248 18 C -0.399 4.399 19 H 0.080 0.920 20 C 0.009 3.991 21 N -0.923 5.923 22 Si 0.971 3.029 23 H -0.262 1.262 24 H -0.266 1.266 25 H -0.268 1.268 26 C -0.182 4.182 27 C -0.188 4.188 28 C -0.177 4.177 29 C -0.176 4.176 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.416 0.584 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.107 0.893 45 H 0.285 0.715 46 H 0.119 0.881 47 H 0.106 0.894 48 H 0.109 0.891 49 H 0.096 0.904 50 H 0.101 0.899 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.578 2.410 9.435 36.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 O -0.301 6.301 3 C 0.109 3.891 4 C -0.232 4.232 5 C 0.058 3.942 6 H 0.097 0.903 7 C -0.210 4.210 8 N -0.362 5.362 9 C 0.303 3.697 10 O -0.456 6.456 11 C -0.130 4.130 12 C -0.027 4.027 13 C -0.188 4.188 14 C -0.096 4.096 15 C -0.260 4.260 16 C 0.070 3.930 17 O -0.156 6.156 18 C -0.476 4.476 19 H 0.097 0.903 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.793 3.207 23 H -0.186 1.186 24 H -0.190 1.190 25 H -0.193 1.193 26 C -0.202 4.202 27 C -0.207 4.207 28 C -0.213 4.213 29 C -0.212 4.212 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.253 0.747 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.167 0.833 43 H 0.159 0.841 44 H 0.125 0.875 45 H 0.094 0.906 46 H 0.137 0.863 47 H 0.124 0.876 48 H 0.128 0.872 49 H 0.114 0.886 50 H 0.120 0.880 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -34.650 2.491 9.936 36.132 hybrid contribution 0.808 -0.252 0.074 0.849 sum -33.842 2.238 10.011 35.363 Atomic orbital electron populations 1.23602 0.80535 1.04142 1.02312 1.87963 1.20802 1.26458 1.94900 1.20990 0.91046 0.83577 0.93485 1.22407 1.02204 1.00539 0.98091 1.20835 0.92902 0.97788 0.82657 0.90271 1.21992 0.99434 1.00728 0.98834 1.45865 1.17867 1.53722 1.18717 1.20898 0.81275 0.79696 0.87825 1.90756 1.47401 1.40243 1.67185 1.20707 0.94392 1.03956 0.93974 1.19211 0.93638 0.94076 0.95738 1.21011 0.97418 0.97479 1.02935 1.21119 0.91894 0.98691 0.97873 1.21316 1.00227 0.97579 1.06893 1.19597 0.87699 0.91104 0.94649 1.83510 1.14968 1.50076 1.67004 1.20716 0.83910 1.08300 1.34629 0.90251 1.25285 0.93270 1.02453 0.97939 1.69733 1.00271 1.40662 1.45748 0.85217 0.78092 0.78207 0.79168 1.18637 1.19022 1.19276 1.20272 0.89545 1.03057 1.07291 1.22858 0.96610 1.04370 0.96872 1.23252 1.03388 0.97567 0.97115 1.23401 0.94093 1.00034 1.03667 0.90601 0.92781 0.88987 0.91649 0.90273 0.91052 0.95021 0.90906 0.91348 0.74652 0.85850 0.83897 0.83312 0.84149 0.87521 0.90574 0.86255 0.87609 0.87243 0.88602 0.88023 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 8.50 113.37 0.96 0.89 16 2 O -0.38 -4.75 8.48 -148.98 -1.26 -6.01 16 3 C 0.15 1.88 0.47 -10.79 -0.01 1.88 16 4 C -0.18 -1.77 7.53 71.98 0.54 -1.23 16 5 C 0.16 3.03 1.90 44.99 0.09 3.12 16 6 H 0.08 1.80 7.58 -2.39 -0.02 1.79 16 7 C -0.15 -3.15 9.11 71.98 0.66 -2.50 16 8 N -0.71 -12.64 4.31 -442.53 -1.91 -14.55 16 9 C 0.52 13.04 7.79 87.66 0.68 13.73 16 10 O -0.58 -21.17 15.70 -3.02 -0.05 -21.22 16 11 C -0.09 -1.94 5.83 29.10 0.17 -1.77 16 12 C -0.03 -0.86 4.37 -19.88 -0.09 -0.94 16 13 C -0.17 -5.45 9.70 22.30 0.22 -5.23 16 14 C -0.08 -2.90 10.04 22.25 0.22 -2.67 16 15 C -0.24 -11.44 9.17 22.39 0.21 -11.24 16 16 C 0.12 6.00 6.65 22.57 0.15 6.15 16 17 O -0.25 -14.38 8.59 -22.77 -0.20 -14.58 16 18 C -0.40 -24.76 9.95 67.92 0.68 -24.09 16 19 H 0.08 5.15 5.43 -2.91 -0.02 5.14 16 20 C 0.01 0.52 5.49 84.83 0.47 0.99 16 21 N -0.92 -56.96 13.96 21.62 0.30 -56.66 16 22 Si 0.97 47.51 28.62 68.60 1.96 49.47 16 23 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 26 C -0.18 -7.66 9.64 22.39 0.22 -7.44 16 27 C -0.19 -2.21 4.26 -10.79 -0.05 -2.25 16 28 C -0.18 -1.76 9.28 30.60 0.28 -1.48 16 29 C -0.18 -1.39 8.87 30.59 0.27 -1.12 16 30 H 0.08 0.45 2.98 -2.39 -0.01 0.44 16 31 H 0.05 0.29 6.51 -2.39 -0.02 0.27 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.08 0.56 5.38 -2.39 -0.01 0.54 16 35 H 0.07 0.67 7.13 -2.39 -0.02 0.65 16 36 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.07 1.34 7.38 -2.39 -0.02 1.32 16 38 H 0.07 1.37 7.56 -2.39 -0.02 1.35 16 39 H 0.42 5.07 7.86 -92.71 -0.73 4.34 16 40 H 0.12 2.12 8.08 -2.39 -0.02 2.10 16 41 H 0.14 1.83 8.08 -2.39 -0.02 1.81 16 42 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 43 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 44 H 0.11 5.51 5.64 -2.91 -0.02 5.50 16 45 H 0.28 16.06 8.31 -92.70 -0.77 15.29 16 46 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 47 H 0.11 1.40 8.06 -2.39 -0.02 1.39 16 48 H 0.11 1.10 5.44 -2.39 -0.01 1.09 16 49 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.11 0.63 5.02 -2.38 -0.01 0.62 16 Total: -1.00 -79.16 400.82 4.75 -74.41 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.23 Total: 24.34 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 5.67 Total: -35.21 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -1.60 Total: -71.21 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.51 Total: -41.80 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.96 Total: 49.47 kcal Total: -79.16 4.75 -74.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839837656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.733 kcal (2) G-P(sol) polarization free energy of solvation -79.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds