Wall clock time and date at job start Wed Apr 1 2020 05:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47276 * 2 1 4 4 C 1.52998 * 109.46933 * 120.00039 * 2 1 3 5 5 O 1.42903 * 109.47217 * 294.99649 * 4 2 1 6 6 C 1.42899 * 114.00445 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47534 * 180.02562 * 6 5 4 8 8 O 1.20826 * 119.99557 * 0.02562 * 7 6 5 9 9 O 1.34226 * 120.00224 * 180.02562 * 7 6 5 10 10 C 1.45202 * 117.00068 * 180.02562 * 9 7 6 11 11 C 1.53040 * 109.45859 * 270.02873 * 10 9 7 12 12 C 1.53195 * 109.31238 * 178.60276 * 11 10 9 13 13 N 1.46927 * 108.76603 * 54.65367 * 12 11 10 14 14 C 1.36926 * 120.63057 * 126.40512 * 13 12 11 15 15 H 1.08002 * 120.00229 * 331.83345 * 14 13 12 16 16 C 1.38820 * 120.00178 * 151.82462 * 14 13 12 17 17 N 1.31620 * 119.99731 * 343.07722 * 16 14 13 18 18 Si 1.86796 * 120.00014 * 163.06955 * 16 14 13 19 19 H 1.48500 * 109.47216 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46792 * 120.00650 * 18 16 14 21 21 H 1.48497 * 109.47099 * 240.00428 * 18 16 14 22 22 C 1.46926 * 118.73788 * 306.38676 * 13 12 11 23 23 C 1.53043 * 109.45967 * 149.97321 * 10 9 7 24 24 C 1.50698 * 109.47393 * 239.99642 * 2 1 3 25 25 C 1.38234 * 120.00182 * 299.73332 * 24 2 1 26 26 C 1.38230 * 120.00122 * 179.80747 * 25 24 2 27 27 C 1.38236 * 120.00277 * 0.39165 * 26 25 24 28 28 C 1.38235 * 119.99688 * 359.86165 * 27 26 25 29 29 C 1.38237 * 119.99925 * 120.00098 * 24 2 1 30 30 H 1.09002 * 109.47540 * 300.00598 * 1 2 3 31 31 H 1.09011 * 109.46906 * 59.99608 * 1 2 3 32 32 H 1.08996 * 109.47781 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47393 * 54.99981 * 4 2 1 34 34 H 1.09008 * 109.47211 * 175.00034 * 4 2 1 35 35 H 1.09004 * 109.47089 * 300.00578 * 6 5 4 36 36 H 1.09005 * 109.46753 * 60.00128 * 6 5 4 37 37 H 1.08996 * 109.45789 * 29.99858 * 10 9 7 38 38 H 1.09001 * 109.49875 * 298.56236 * 11 10 9 39 39 H 1.09002 * 109.49701 * 58.66187 * 11 10 9 40 40 H 1.08996 * 109.59361 * 294.86570 * 12 11 10 41 41 H 1.08999 * 109.70469 * 174.50490 * 12 11 10 42 42 H 0.96999 * 119.99587 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.58863 * 293.81910 * 22 13 12 44 44 H 1.08998 * 109.70206 * 173.46757 * 22 13 12 45 45 H 1.09001 * 109.49466 * 301.34010 * 23 10 9 46 46 H 1.09004 * 109.49471 * 61.43492 * 23 10 9 47 47 H 1.07997 * 119.99911 * 359.97438 * 25 24 2 48 48 H 1.08001 * 120.00001 * 180.23015 * 26 25 24 49 49 H 1.07994 * 120.00479 * 179.83341 * 27 26 25 50 50 H 1.08003 * 120.00246 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00277 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6619 0.0168 2.4131 6 6 2.0912 -0.5744 3.6412 7 6 1.6402 0.2824 4.7959 8 8 1.0147 1.2952 4.5884 9 8 1.9332 -0.0795 6.0548 10 6 1.4663 0.7933 7.1172 11 6 2.5346 1.8472 7.4176 12 6 2.0246 2.7872 8.5145 13 7 1.6260 1.9836 9.6781 14 6 2.1343 2.2547 10.9203 15 1 3.1110 2.7053 11.0176 16 6 1.3942 1.9505 12.0547 17 7 0.1020 1.7206 11.9552 18 14 2.2321 1.8674 13.7221 19 1 3.6786 2.1642 13.5645 20 1 1.6188 2.8656 14.6345 21 1 2.0648 0.5067 14.2928 22 6 0.6714 0.8838 9.4835 23 6 1.1964 -0.0347 8.3757 24 6 2.0323 -0.7105 -1.2304 25 6 1.7030 -2.0355 -1.4463 26 6 2.1605 -2.6860 -2.5769 27 6 2.9542 -2.0139 -3.4876 28 6 3.2878 -0.6904 -3.2691 29 6 2.8271 -0.0387 -2.1403 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 1.6573 -1.5698 3.7365 36 1 3.1786 -0.6500 3.6474 37 1 0.5469 1.2875 6.8035 38 1 3.4466 1.3548 7.7554 39 1 2.7434 2.4212 6.5148 40 1 1.1654 3.3472 8.1455 41 1 2.8157 3.4796 8.8022 42 1 -0.4151 1.5077 12.7478 43 1 -0.2983 1.2886 9.1936 44 1 0.5690 0.3179 10.4095 45 1 0.4527 -0.8004 8.1548 46 1 2.1212 -0.5092 8.7042 47 1 1.0860 -2.5617 -0.7330 48 1 1.9002 -3.7202 -2.7475 49 1 3.3139 -2.5229 -4.3695 50 1 3.9082 -0.1653 -3.9803 51 1 3.0877 0.9954 -1.9697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845497969.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:48 Heat of formation + Delta-G solvation = -94.864018 kcal Electronic energy + Delta-G solvation = -29520.342878 eV Core-core repulsion = 25385.089735 eV Total energy + Delta-G solvation = -4135.253144 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.41562 -39.96241 -38.34366 -37.29311 -35.79361 -34.90358 -32.72841 -31.32262 -30.49065 -30.04403 -29.68221 -28.60755 -26.44728 -25.07567 -23.63047 -22.83930 -22.49899 -22.14100 -20.77866 -20.39483 -19.33592 -17.69402 -17.48372 -17.02293 -16.80695 -16.49675 -16.09609 -15.68600 -15.40122 -15.14377 -14.83238 -14.41519 -14.06268 -13.87686 -13.69087 -13.64995 -13.55059 -13.26132 -13.08563 -12.83450 -12.68090 -12.51352 -12.34635 -12.27667 -11.75731 -11.54189 -11.46894 -11.23737 -11.18849 -11.08309 -11.01190 -10.77640 -10.72034 -10.44336 -10.20863 -10.17215 -10.03697 -9.89822 -9.66251 -9.45941 -9.32429 -9.13088 -8.51211 -6.74254 -5.83170 -3.25805 0.92298 0.99571 2.32990 2.37482 3.35129 3.36192 3.43914 3.46290 3.70709 4.32222 4.42370 4.46933 4.60890 4.65846 4.66872 4.73986 4.80092 4.90155 4.91596 4.95380 5.09423 5.12240 5.20846 5.24791 5.35309 5.35381 5.40425 5.51807 5.56346 5.60641 5.67271 5.72479 5.74577 5.97554 5.98691 6.08635 6.11799 6.21698 6.24698 6.32088 6.40978 6.48666 6.56302 6.59344 6.70342 6.72038 6.84426 6.95040 7.26795 7.56646 7.76996 7.96734 8.40367 9.16408 9.79095 10.35854 11.26095 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.037934 B = 0.001495 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.951181 B =18720.774680 C =18774.368162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 H 0.090 0.910 4 C 0.070 3.930 5 O -0.364 6.364 6 C 0.072 3.928 7 C 0.457 3.543 8 O -0.489 6.489 9 O -0.357 6.357 10 C 0.100 3.900 11 C -0.146 4.146 12 C 0.149 3.851 13 N -0.592 5.592 14 C -0.254 4.254 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.903 5.903 18 Si 0.904 3.096 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.288 1.288 22 C 0.174 3.826 23 C -0.135 4.135 24 C -0.075 4.075 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.113 4.113 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.061 0.939 42 H 0.254 0.746 43 H 0.022 0.978 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -9.847 -29.389 31.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 H 0.108 0.892 4 C -0.006 4.006 5 O -0.283 6.283 6 C -0.006 4.006 7 C 0.298 3.702 8 O -0.376 6.376 9 O -0.274 6.274 10 C 0.046 3.954 11 C -0.186 4.186 12 C 0.022 3.978 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.085 0.915 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.733 3.267 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.215 1.215 22 C 0.048 3.952 23 C -0.174 4.174 24 C -0.075 4.075 25 C -0.132 4.132 26 C -0.137 4.137 27 C -0.142 4.142 28 C -0.137 4.137 29 C -0.131 4.131 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.392 -9.366 -29.261 31.035 hybrid contribution 0.478 -0.269 0.782 0.955 sum 4.871 -9.634 -28.479 30.456 Atomic orbital electron populations 1.21811 0.93240 1.02160 1.02718 1.20065 0.97159 0.99844 0.89752 0.89214 1.22622 0.98948 0.94675 0.84352 1.87947 1.78535 1.49472 1.12319 1.21670 1.00686 0.95530 0.82715 1.22997 0.77556 0.85036 0.84650 1.90679 1.36292 1.25216 1.85389 1.86512 1.72467 1.53520 1.14929 1.22991 0.97935 0.90539 0.83902 1.22470 0.98686 0.97590 0.99827 1.20866 0.97515 0.92106 0.87333 1.44122 1.51634 1.32062 1.03684 1.19241 0.98341 1.38421 0.82343 0.91456 1.25071 0.94854 1.01572 0.98093 1.70029 1.04686 1.51523 1.28493 0.86201 0.79018 0.77376 0.84055 1.20207 1.21691 1.21503 1.20813 0.90502 0.88223 0.95697 1.22474 1.01848 0.99108 0.94015 1.19738 0.97640 0.94226 0.95944 1.21052 1.00117 0.94272 0.97794 1.21163 0.98022 0.99979 0.94516 1.21180 0.98653 0.94916 0.99471 1.21169 0.99997 0.94971 0.97539 1.21127 0.97532 1.00078 0.94384 0.90966 0.92493 0.92642 0.92668 0.92705 0.89125 0.89109 0.90219 0.91325 0.92613 0.95995 0.92033 0.93564 0.95950 0.88515 0.92345 0.91411 0.85985 0.86030 0.86153 0.86009 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.90 37.15 0.33 -0.84 16 2 C -0.05 -0.40 2.80 -91.78 -0.26 -0.66 16 3 H 0.09 0.76 7.88 -51.93 -0.41 0.35 16 4 C 0.07 0.58 5.05 37.16 0.19 0.77 16 5 O -0.36 -4.24 9.41 -55.19 -0.52 -4.76 16 6 C 0.07 0.76 6.53 36.00 0.24 1.00 16 7 C 0.46 7.05 8.01 36.00 0.29 7.34 16 8 O -0.49 -9.28 15.72 -25.48 -0.40 -9.68 16 9 O -0.36 -5.88 9.88 -39.25 -0.39 -6.26 16 10 C 0.10 1.86 2.42 -26.69 -0.06 1.80 16 11 C -0.15 -2.75 5.72 -26.61 -0.15 -2.91 16 12 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 13 N -0.59 -14.90 2.99 -172.32 -0.52 -15.41 16 14 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 15 H 0.07 1.81 7.89 -52.49 -0.41 1.39 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 17 N -0.90 -25.97 11.19 55.49 0.62 -25.35 16 18 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 23 C -0.14 -2.63 5.74 -26.61 -0.15 -2.78 16 24 C -0.08 -0.57 4.78 -104.62 -0.50 -1.07 16 25 C -0.11 -0.79 8.76 -39.59 -0.35 -1.14 16 26 C -0.12 -0.76 10.05 -39.58 -0.40 -1.15 16 27 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 28 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 29 C -0.11 -0.81 9.67 -39.58 -0.38 -1.19 16 30 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 31 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.05 0.41 7.41 -51.93 -0.38 0.02 16 33 H 0.06 0.38 7.55 -51.93 -0.39 -0.01 16 34 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.60 7.16 -51.93 -0.37 1.22 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 2.53 6.07 -51.93 -0.31 2.22 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 47 H 0.12 0.70 7.16 -52.49 -0.38 0.33 16 48 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 49 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 50 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 51 H 0.12 0.74 7.95 -52.49 -0.42 0.32 16 LS Contribution 413.66 15.07 6.23 6.23 Total: -1.00 -32.11 413.66 -10.81 -42.92 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.53 Total: -1.19 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.28 Total: -2.95 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.11 Total: -40.76 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.31 Total: -20.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.11 -10.81 -42.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845497969.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.945 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds